Latossolos da bacia do ribeirão do lobo (Brotas, Itirapina, SP): I. Granulometria

Os perfis de Latossolos da bacia do ribeirão do Lobo, região de S. Carlos, Brotas e Itirapina, SP, classificados inicialmente pela COMISSÃO DE SOLOS (1960) e re-classificados por FREIRE et alii (1978), foram amostrados e estudados através de análise granulométrica, empregando-se os parâmetros estatísticos propostos por FOLK & WARD (1957). Os principais objetivos do trabalho são a caracterização desses solos, elucidação de sua gênese e evolução, bem como verificar a aparente uniformidade morfológica evidenciada pela classificação de FREIRE et alli(1978). Os resultados obtidos mostraram que os perfis estudados se distribuem em duas categorias distintas: uma que apresenta tendência para se deslocar para o lado das frações mais grosseiras, tem como moda fração areia fina e curvas de distribuição de frequência de tamanho simétricas;outra onde a fração modal é constituida pela areia média com porcentagem de argila cerca de 30 a 40% maior gue a primeira e curvas de distribuição de freguência de tamanho assimétricas. Prováveis ocorrências de descontinuidades litológicas não puderam ser indicadas pelos resultados obtidos, mas indícios podem ser sugeridos pelos valores de grau de seleção, grau de assimetria e curtose, sem que, entretanto seja um dado conclusivo.

Latossolos da bacia do ribeirão do lobo (Brotas - Itirapina, SP): II. Mineralogia

Quatro perfis de Latossolos distróficos da bacia do ribeirão do Lobo, localizada entre os municípios de Brotas, Itirapina, São Carlos, foram amostrados e estudados através da fração areia muito fina: mineralogia do resíduo pesado e arredondamento da fração leve. A finalidade do trabalho foi estabelecer parâmetros para estudo da gênese dos solos, uniformidade do material de origem e semelhança entre perfis, constatadas previamente pela morfologia. Quantitativamente, os quatro perfis se assemelham exibindo composição mineralógica simples que, aliada á estabilidade química dos minerais, confere aos solos um caráter de elevada maturidade mineralógica, indicando esgotamento total das reservas de nutrientes minerais das plantas. Quantitativamente, um dos perfis distinguiu-se pelo maior teor de minerais pesados, 3 a 4 vezes superior aos demais. Na sua grande maioria, são minerais opacos, indicando uma importante contribuição de basaltos que afloram próximo a este perfil. A composição mineralógica denuncia os arenitos da Formação Botucatu e basaltos da Formação Serra Geral ambos do Jurássico-cretáceo, como material de origem, retrabalhados, para formar esses latossolos. A relação zirconita/turmalina mostra grande variação em dois perfis. Entretanto outros parâmetros como arredondamento, granulometria e variações nos tipos de zirconita e turmalina não confirmam nem sugerem a presença de descontinuídades litológicas, mas uma grande uniformidade dos perfis.

Distribuição de peixes na microbacia do Ribeirão Grande, Serra da Mantiqueira Oriental, São Paulo, Brasil

Foram amostrados oito pontos de coleta no sistema do Ribeirão Grande (22º47'08"S, 45º28'17"W), de julho de 2001 a abril de 2002. Os peixes foram amostrados quatro vezes em cada ponto, no inverno (julho de 2001), na primavera (outubro de 2001), no verão (fevereiro de 2002) e no outono (abril de 2002). Em cada ponto obteve-se a condutividade, pH, temperatura da água e oxigênio dissolvido, a elevação foi obtida em metros utilizando-se de um receptor GPS. A dimensão da distribuição espacial foi a principal fonte de variabilidade na distribuição de peixes no sistema do Ribeirão Grande. Foi capturado um total de 37 espécies e as dez espécies mais abundantes correspondem a quase 90% do total capturado. Pareiorhina rudolphi foi capturada principalmente na encosta; Characidium lauroi, Trichomycterus itatiayae, Neoplecostomus microps, Astyanax scabripinnis, Taunaya bifasciata e Harttia carvalhoi foram capturadas no pediplano; Characidium alipioi, Imparfinis minutus e Loricariichthys sp. foram capturadas na planície do vale. Os pontos amostrais P6 e P7, localizados na transição entre tributários e o canal principal, foram considerados um ecótono, onde a diversidade de espécies foi mais alta.

Ictiofauna do Ribeirão do Pântano, afluente do Rio Mogi-Guaçu, Bacia do Alto Rio Paraná, São Paulo, Brasil

As assembléias de peixes do ribeirão do Pântano, São Paulo, Brasil foram estudadas mensalmente entre os meses de maio de 2000 e junho de 2001. Estudos sobre sua composição, distribuição longitudinal e constância das espécies de peixes foram realizados. Foram feitas coletas da ictiofauna com auxilio de redes de espera, peneiras, tarrafas e redes de arrasto em três diferentes pontos do ribeirão. Sessenta e três espécies pertencentes a 46 gêneros de 18 famílias foram identificadas. As ordens Characiformes (com 30 espécies registradas, representando 47,62% da ictiofauna) e Siluriformes com 22 espécies, (34,92% do total), foram as ordens melhor representadas no elenco das espécies do ribeirão do Pântano. Cinco espécies pertencentes a ordem Perciformes, três a ordem Gymnotiformes, duas a Cyprinondontiformes e uma de Synbranchiformes também foram encontradas.

Immunological abnormalities of acquired immunodeficiency syndrome and related disorders in patients from Rio de Janeiro, Brazil

The immunoloical profile of acquired immunodeficiency syndrome (AIDS) and chronic lymphadenopathy syndrome (CLAS) in 15 and 11 Brazilian patients, respectively, was studied. The AIDS patients showed reduced percentage of total T (CD3) and T-helper-inducer (CD4) lymphocytes, relative increase in numbers of T-suppressor-cytotoxic (CD8) cells and a marked inversion of T-helper-inducer/suppressor-cytotoxic (CD4/CD8) ratio. Lymphoproliferative responses to PHA, ConA, PPD and PWM were diminished. Hypergamaglobulinemia and high levels of circulating immune complexes were also found. The CLAS patients also showed important immunological alterations, but not so intense as those with AIDS. These data seems to be similar to those observed in other parts of the world.

IgM antibodies to Schistosoma mansoni gut-associated antigens for the study of schistosomiasis transmission in Ribeirão Pires, São Paulo

The potential of an immunofluorescence test for detection of IgM antibodies against Schistosoma mansoni gut-associated antigens (IgM-IFT) was evaluated as a tool for studying aspects related to the schistosomiasis transmission in Ribeirão Pires, in the metropolitan area of the capital of the State of São Paulo, Brazil. Children from a school with about 400 students, 6 to 18 years, were followed-up for two years. In the five surveys, carried out at 6-month intervals, from October 92 to October 94, serological (IgM-IFT) prevalence indices of 5.3%, 5.8%, 6.2%, 2.9% and 3.3% were obtained. These indices were 7 to 10 times higher than the parasitological prevalence indices of 0.5%, 0.5%, 0.7%, 0.4% and 0% determined by the Kato-Katz method. Seroconversion from IFT negative to positive was indicating possible newly acquired S. mansoni infection in three children. But confirmation of infection by fecal examination was possible in only one child. The IgM-IFT can constitute a valuable tool for the improvement of the vigilance program in low endemic areas for schistosomiasis, better characterizing the S. mansoni transmission in such areas.

Cytokine profile associated with human chronic schistosomiasis mansoni

This study objective was to evaluate the cytokines associated with early events of hepatic fibrosis in schistosomiasis mansoni. Hepatic fibrosis was classified by ultrasonography in 94 patients. Immunological evaluation was performed by measurement of secreted cytokines (interleukin IL-5, IL-10, IL-13, interferon-gamma, tumor necrosis factor-alpha and transforming growth factors-beta) in peripherl blood mononuclear cells stimulated by Schistosoma mansoni antigens. Significantly, higher levels of IL-5, IL-10 and IL-13 were found in supernatants of SEA-stimulated PBMC from subjects with degree III hepatic fibrosis as compared to patients with degree I or II fibrosis, Significant increases in IL-5 and IL-13 levels were also observed in some of the subjects who remained untreated for one year following initial assessment and developed more serious fibrosis during this period. The data suggests a role for type 2 cytokines in early stages of hepatic fibrosis in human schistosomiasis mansoni.

In vitro susceptibility to antifungal agents of environmental Cryptococcus spp. isolated in the city of Ribeirão Preto, São Paulo, Brazil

Infections by Cryptococcus strains other than C. neoformans have been detected in immunocompromised patients. Of these strains, three are considered human pathogens: C. albidus, C. laurenttii, and C. uniguttulatus. This study deals with the in vitro susceptibility of Cryptococcus to drugs such as amphotericin B, itraconazole, fluconazole, and 5-fluorocytosine. Environmental Cryptococcus isolates (50) distributed as follows: C. neoformans var. neoformans (16), C. albidus (17), C. laurentii (14), and C. uniguttulatus (3) were evaluated by the micro and macrodilution techniques, according to EUCAST and NCCLS recommendations, respectively. Considering both methodologies the respective minimal inhibitory concentrations (MIC) were 0.125 and 2 µg/ml for amphotericin B, 0.06 and 8 µg/ml for itraconazole, and 0.5 and more than 64 µg/ml for fluconazole and 5-fluorocytosine. Agreement percentages for the two methodologies were 100% for amphotericin B and fluconazole for all the strains tested. For itraconazole, the agreement percentage was 81.3% in the C. neoformans strain and 100% for all the others. All species had a agreement percentage of 94.1 to 100% when susceptibility to 5-fluorocytosine was tested. It is concluded that environmental isolates of C. neoformans var. neoformans, C. albidus, C. laurentii, and C. uniguttulatus may show high MICs against certain drugs, suggesting in vitro primary resistance to the antifungals tested.

Paleogenetic and taphonomic analysis of human bones from Moa, Beirada, and Zé Espinho Sambaquis, Rio de Janeiro, Brazil

The present paper discusses mtDNA and taphonomy of human remains from Moa, Beirada, and Zé Espinho sambaquis of Saquarema, state of Rio de Janeiro, Brazil. New human bone dating by 14C-AMS for Moa archeological site (3810+50 BP - GX-31826-AMS) is included. Preservation of microscopic lamellae and DNA is not related to the macroscopic integrity of the bones. Results here suggest that the preservation of amplifiable DNA fragments may have relation to the preservation of the lamellar arrangement as indicated by optical microscopic examination (polarized light). In 13 human bone fragments from Moa, Beirada, and Zé Espinho it was possible to sequence mtDNA from the 3 individuals of Moa, and from 1 of 4 individuals of Beirada, whose bones also show extensive areas with preserved lamellar structures. The 6 human bone fragments of Zé Espinho and 3 of the 4 fragments of Beirada showed extensive destruction of cortical microstructure represented by cavities, intrusive minerals, and agglomerated microscopic bodies of fungi and bacteria; it was not possible to extract mtDNA from these samples. The results support the hypothesis that the preservation of the microscopic osteon organization is a good predictor for DNA preservation. It was also confirmed the C haplogroup antiquity in Brazil.

Survey of Leptospira spp in pampas deer (Ozotoceros bezoarticus) in the Pantanal wetlands of the state of Mato Grosso do Sul, Brazil by serology and polymerase chain reaction

This work reports a survey of Leptospira spp in pampas deer (Ozotoceros bezoarticus) in the Pantanal wetlands of the state of Mato Grosso do Sul, Brazil by serology and polymerase chain reaction (PCR). Seventy pampas deer were captured in the dry season and surveyed using PCR, microscopic agglutination test (MAT) (n = 51) and by both techniques (n = 47). PCR detected infections in two pampas deer and MAT detected infections in three. Through sequencing and phylogenetic analyses, the PCR-amplified fragment detected in deer was identified as Leptospira interrogans. Serovars Pomona and Butembo were detected using MAT and the highest titre was 200 for serovar Pomona. Epidemiological aspects of the findings are discussed.

HIV-1 tropism and CD4 T lymphocyte recovery in a prospective cohort of patients initiating HAART in Ribeirão Preto, Brazil

While human immunodeficiency virus (HIV)-1 chemokine co-receptors 5 tropism and the GWGR motif in the envelope third variable region (V3 loop) have been associated with a slower disease progression, their influence on antiretroviral response remains unclear. The impact of baseline V3 characteristics on treatment response was evaluated in a randomised, double blind, prospective cohort study with patients initiating highly active antiretroviral therapy with lopinavir or efavirenz plus azithothymidine/3TC (1:1) over 48 weeks. Similar virological and immunological responses were observed for both treatment regimens. The 43 individuals had a mean baseline CD4 T cell count of 119 cells/mm³ [standard deviation (SD) = 99] and a mean viral load of 5.09 log10 copies/mL (SD = 0.49). The GWGR motif was not associated with a CD4 T cell response, but predicted R5 tropism by the geno2pheno[clinical20%] algorithm correlated with higher CD4 T cell levels at all monitoring points (p < 0.05). Moreover, higher false-positive rates (FPR) values from this analysis revealed a strong correlation with CD4 T cell recovery (p < 0.0001). Transmitted drug resistance mutations, documented in 3/41 (7.3%) cases, were unrelated to the assigned antiretroviral regimen and had no impact on patient outcomes. In conclusion, naÏve HIV-1 R5 infected patients exhibited higher CD4 T cell counts at baseline; this difference was sustained throughout therapy. The geno2pheno[clinical] option FPR positively correlated with CD4 T cell gain and may be useful in predicting CD4 T cell recovery.

Cutaneous lesions sensory impairment recovery and nerve regeneration in leprosy patients

It is important to understand the mechanisms that enable peripheral neurons to regenerate after nerve injury in order to identify methods of improving this regeneration. Therefore, we studied nerve regeneration and sensory impairment recovery in the cutaneous lesions of leprosy patients (LPs) before and after treatment with multidrug therapy (MDT). The skin lesion sensory test results were compared to the histopathological and immunohistochemical protein gene product (PGP) 9.5 and the p75 nerve growth factor receptors (NGFr) findings. The cutaneous neural occupation ratio (CNOR) was evaluated for both neural markers. Thermal and pain sensations were the most frequently affected functions at the first visit and the most frequently recovered functions after MDT. The presence of a high cutaneous nerve damage index did not prevent the recovery of any type of sensory function. The CNOR was calculated for each biopsy, according to the presence of PGP and NGFr-immunostained fibres and it was not significantly different before or after the MDT. We observed a variable influence of MDT in the recovery from sensory impairment in the cutaneous lesions of LPs. Nociception and cold thermosensation were the most recovered sensations. The recovery of sensation in the skin lesions appeared to be associated with subsiding inflammation rather than with the regenerative activity of nerve fibres.

Characterisation of divergent flavivirus NS3 and NS5 protein sequences detected in Rhipicephalus microplus ticks from Brazil

Transcripts similar to those that encode the nonstructural (NS) proteins NS3 and NS5 from flaviviruses were found in a salivary gland (SG) complementary DNA (cDNA) library from the cattle tick Rhipicephalus microplus.Tick extracts were cultured with cells to enable the isolation of viruses capable of replicating in cultured invertebrate and vertebrate cells. Deep sequencing of the viral RNA isolated from culture supernatants provided the complete coding sequences for the NS3 and NS5 proteins and their molecular characterisation confirmed similarity with the NS3 and NS5 sequences from other flaviviruses. Despite this similarity, phylogenetic analyses revealed that this potentially novel virus may be a highly divergent member of the genus Flavivirus. Interestingly, we detected the divergent NS3 and NS5 sequences in ticks collected from several dairy farms widely distributed throughout three regions of Brazil. This is the first report of flavivirus-like transcripts inR. microplus ticks. This novel virus is a potential arbovirus because it replicated in arthropod and mammalian cells; furthermore, it was detected in a cDNA library from tick SGs and therefore may be present in tick saliva. It is important to determine whether and by what means this potential virus is transmissible and to monitor the virus as a potential emerging tick-borne zoonotic pathogen.