Local translation of classes of mRNAs that are targeted to neuronal dendrites

The functioning of the neuronal dendrite results from a variety of biological processes including mRNA transport to and protein translation in the dendrite. The complexity of the mRNA population in dendrites suggests that specific biological processes are modulated through the regulation of dendritic biology. There are various classes of mRNAs in dendrites whose translation modulates the ability of the dendrite to receive and integrate presynaptic information. Among these mRNAs are those encoding selective transcription factors that function in the neuronal soma and ionotropic glutamate receptors that function on the neuronal membrane. Conclusive evidence that these mRNAs can be translated is reviewed, and identification of the endogenous sites of translation in living dendrites is presented. These data, as well as those described in the other articles resulting from this colloquium, highlight the complexity of dendritic molecular biology and the exquisitely selective and sensitive modulatory role played by the dendrite in facilitating intracellular and intercellular communication.

Different sources of reduced carbon contribute to form three classes of terpenoid emitted by Quercus ilex L. leaves.

Quercus ilex L. leaves emit terpenes but do not have specialized structures for terpene storage. We exploited this unique feature to investigate terpene biosynthesis in intact leaves of Q. ilex. Light induction allowed us to distinguish three classes of terpenes: (i) a rapidly induced class including alpha-pinene; (ii) a more slowly induced class, including cis-beta-ocimene; and (iii) the most slowly induced class, including 3-methyl-3-buten-1-ol. Using 13C, we found that alpha-pinene and cis-beta-ocimene were labeled quickly and almost completely while there was a delay before label appeared in linalool and 3-methyl-3-buten-1-ol. The acetyl group of 3-methyl-3-buten-1-yl acetate was labeled quickly but label was limited to 20% of the moiety. It is suggested that the ocimene class of monoterpenes is made from one or more terpenes of the alpha-pinene class and that both classes are made entirely from reduced carbon pools inside the chloroplasts. Linalool and 3-methyl-3-buten-1-ol are made from a different pool of reduced carbon, possibly in nonphotosynthetic plastids. The acetyl group of the 3-methyl-3-buten-1-yl acetate is derived mostly from carbon that does not participate in photosynthetic reactions. Low humidity and prolonged exposure to light favored ocimenes emission and induced linalool emission. This may indicate conversion between terpene classes.

How optimization of potential functions affects protein folding.

The relationship between the optimization of the potential function and the foldability of theoretical protein models is studied based on investigations of a 27-mer cubic-lattice protein model and a more realistic lattice model for the protein crambin. In both the simple and the more complicated systems, optimization of the energy parameters achieves significant improvements in the statistical-mechanical characteristics of the systems and leads to foldable protein models in simulation experiments. The foldability of the protein models is characterized by their statistical-mechanical properties--e.g., by the density of states and by Monte Carlo folding simulations of the models. With optimized energy parameters, a high level of consistency exists among different interactions in the native structures of the protein models, as revealed by a correlation function between the optimized energy parameters and the native structure of the model proteins. The results of this work are relevant to the design of a general potential function for folding proteins by theoretical simulations.

Specific interactions outside the proline-rich core of two classes of Src homology 3 ligands.

Two dodecapeptides belonging to distinct classes of Src homology 3 (SH3) ligands and selected from biased phage display libraries were used to investigate interactions between a specificity pocket in the Src SH3 domain and ligant residues flanking the proline-rich core. The solution structures of c-Src SH3 complexed with these peptides were solved by NMR. In addition to proline-rich, polyproline type II helix-forming core, the class I and II ligands each possesses a flanking sequence that occupies a large pocket between the RT and n-Src loops of the SH3 domain. Structural and mutational analyses illustrate how the two classes of SH3 ligands exploit a specificity pocket on the receptor differently to increase binding affinity and specificity.

Eukaryotic methionyl aminopeptidases: two classes of cobalt-dependent enzymes.

Using partial amino acid sequence data derived from porcine methionyl aminopeptidase (MetAP; methionine aminopeptidase, peptidase M; EC 3.4.11.18), a full-length clone of the homologous human enzyme has been obtained. The cDNA sequence contains 2569 nt with a single open reading frame corresponding to a protein of 478 amino acids. The C-terminal portion representing the catalytic domain shows limited identity with MetAP sequences from various prokaryotes and yeast, while the N terminus is rich in charged amino acids, including extended strings of basic and acidic residues. These highly polar stretches likely result in the spuriously high observed molecular mass (67 kDa). This cDNA sequence is highly similar to a rat protein, termed p67, which was identified as an inhibitor of phosphorylation of initiation factor eIF2 alpha and was previously predicted to be a metallopeptidase based on limited sequence homology. Model building established that human MetAP (p67) could be readily accommodated into the Escherichia coli MetAP structure and that the Co2+ ligands were fully preserved. However, human MetAP was found to be much more similar to a yeast open reading frame that differed markedly from the previously reported yeast MetAP. A similar partial sequence from Methanothermus fervidus suggests that this p67-like sequence is also found in prokaryotes. These findings suggest that there are two cobalt-dependent MetAP families, presently composed of the prokaryote and yeast sequences (and represented by the E. coli structure) (type I), on the one hand, and by human MetAP, the yeast open reading frame, and the partial prokaryotic sequence (type II), on the other.

On the nullstellensätze for stein spaces and C-analytic sets.

In this work we prove the real Nullstellensatz for the ring O(X) of analytic functions on a C-analytic set X ⊂ Rn in terms of the saturation of Łojasiewicz’s radical in O(X): The ideal I(Ƶ(a)) of the zero-set Ƶ(a) of an ideal a of O(X) coincides with the saturation (Formula presented) of Łojasiewicz’s radical (Formula presented). If Ƶ(a) has ‘good properties’ concerning Hilbert’s 17th Problem, then I(Ƶ(a)) = (Formula presented) where (Formula presented) stands for the real radical of a. The same holds if we replace (Formula presented) with the real-analytic radical (Formula presented) of a, which is a natural generalization of the real radical ideal in the C-analytic setting. We revisit the classical results concerning (Hilbert’s) Nullstellensatz in the framework of (complex) Stein spaces. Let a be a saturated ideal of O(Rn) and YRn the germ of the support of the coherent sheaf that extends aORn to a suitable complex open neighborhood of Rn. We study the relationship between a normal primary decomposition of a and the decomposition of YRn as the union of its irreducible components. If a:= p is prime, then I(Ƶ(p)) = p if and only if the (complex) dimension of YRn coincides with the (real) dimension of Ƶ(p).

Application of Mathieu functions for the study of non-slanted reflection gratings

In this work we prensent an analysis of non-slanted reflection gratings by using exact solution of the second order differential equation derived from Maxwell equations, in terms of Mathieu functions. The results obtained by using this method will be compared to those obtained by using the well known Kogelnik's Coupled Wave Theory which predicts with great accuracy the response of the efficieny of the zero and first order for volume phase gratings, for both reflection and transmission gratings.

Ledger for the Classes of 1650-1663, 1649-1660

The leather-bound volume contains accounts for the Classes of 1650-1663 and Fellows. Many of the student bills were settled with payment in kind, often in the form of grain, apples, or livestock. The Steward's accounts with the College from 1656-1659 were entered on pages 295-303 and listed as "The steward is Creditor" and "The steward is Debitor." Credit entries include food, fuel, corn, and wages; debit entries list purchases and often identify the sellers.

Ledger for the Classes of 1703-1718, 1703-1731

The parchment-bound hardcover folio volume contains accounts for Fellows, Tutors, the President, and members of the Classes of 1703-1718. Payments were often made with bills of credit, money, and notes. The Steward's accounts with the College are interspersed in the volume.

Ledger for the Classes of 1723-1731, 1719-1755

The volume, bound in a modern leather binding, contains accounts for the Classes of 1723-1731. Leaves 108-118 list the Steward's account with Harvard College arranged monthly for the years 1721-1729.

Ledger for the Classes of 1732-1743, 1728-1749

The volume, bound in a modern green leather binding, contains accounts for the Classes of 1732-1743. The Steward's accounts with Harvard College are interspersed throughout the volume.

Ledger for the Classes of 1744-1749, 1733-1750

The volume, bound in a hardcover parchment binding, contains accounts for the Classes of 1744-1749.

Ledger for the Classes of 1795-1804, 1795-1804

The leather bound folio account book kept by Steward Caleb Gannett contains accounts for members of the Classes of 1795-1804, as well as accounts for President Joseph Willard, Tutors, Fellows, and Faculty. The volume also contains the Steward's accounts with the Harvard Treasurer, as well as his "Cash" accounting. The volume does not have the detailed transaction descriptions found in earlier ledgers; both Credit and Debit entries are described as being paid by, or being owed to, cash, balance, sundry accounts, or the Treasury.

Quarter bill book for the Classes of 1689-1723 and ledger, 1687-1720

Parchment hardcover bound volume arranged into two parts: Quarter bill book and the Steward's ledger. The Quarter bill book contains quarter bill tallies for the Classes of 1689-1723 arranged by seniority, and covers the bill period ending on October 21, 1687 through the period ending March 11, 1720.

Quarter bill book for the Classes of 1720-1760, 1720-1756

Parchment hardcover bound volume containing quarter bill tallies for the Classes of 1720-1760 arranged by seniority, and covering the bill period ending on June 10, 1720 through the period ending December 10, 1756. After each quarter's tallies, an additional section provides the totals for all students in each of the categories, and deductions for building repairs.