Abundance and biomass of mesozooplankton from the S-R02 cruise in the western part of the Black Sea in September 2008

The SESAME dataset contains mesozooplankton data collected during September 2008 in the North-West Black Sea (between 44°46' N and 42°29'N latitude and 28°64'E and 30°59'E longitude). Mesozooplankton sampling was undertaken at 9 stations where samples were collected using a Juday net in the 0-10, 10-25, 25-50, 50-100, 100-150, 150-200 m layer. The dataset includes 30 samples analysed for mesozooplankton species composition, species abundance and total biomass. Sampling volume was estimated by multiplying the mouth area with the wire length. The Taxon-specific mesozooplankton abundance sample or aliquots were analyzed under the binocular microscope. Taxonomic identification was done according to Morduhai-Boltovskii et al. 1968. Total biomass was estimated using a tabel with wet weight for each species an stage (Petipa method).

Abundance patterns and isotopic signals of morphotypes of Globigerinoides ruber

The chemical composition of shells of the planktonic foraminifer Globigerinoides ruber (white) is frequently used to determine past sea surface conditions. Recently, it has been shown that arbitrarily defined morphotypes within this species exhibit different chemical and isotopic signatures. Here, we investigate the occurrence through time and in space of morphological types of G. ruber (white) in late Quaternary and Holocene sediments of the central and the eastern Mediterranean Sea. In 115 samples representing two distinct time intervals (MIS 1-2 and MIS 9-12) at ODP Site 964 and the piston core GeoTü-SL96, we have defined three morphological types within this species and determined their relative abundances and stable isotopic composition. A quantitative analysis of morphological variation within G. ruber (white) in four samples revealed that the subjectively defined morphotypes occupy separate segments of a continuous and homogenous morphospace. We further show that the abundance of the morphotypes changes significantly between glacials and interglacials and that the three morphotypes of G. ruber show significant offsets in their stable isotopic composition. These offsets are consistent within glacial and interglacial stages but their sign is systematically reversed between the two Sites. Since the isotopic shifts among the three G. ruber morphotypes are systematic and often exceed 1per mil, their understanding is essential for the interpretation of all G. ruber-based proxy records for the paleoceanographic development of the Mediterranean during the late Quaternary.

Ladderane lipid analysis and pore water and sediment chemistry of sediment cores from the continental shelf and slope off northwest Africa

The presence and abundance of anaerobic ammonium-oxidizing (anammox) bacteria was investigated in continental shelf and slope sediments (300-3000 m water depth) off northwest Africa in a combined approach applying quantitative polymerase chain reaction (q-PCR) analysis of anammox-specific 16S rRNA genes and anammox-specific ladderane biomarker lipids. We used the presence of an intact ladderane monoether lipid with a phosphocholine (PC) headgroup as a direct indicator for living anammox bacteria and compared it with the abundance of ladderane core lipids derived from both living and dead bacterial biomass. All investigated sediments contained ladderane lipids, both intact and core lipids, in agreement with the presence of anammoxspecific 16S rRNA gene copies, indicating that anammox occurs at all sites. Concentrations of ladderane core lipids in core top sediments varied between 0.3 and 97 ng g**-1 sediment, with the highest concentrations detected at the sites located on the shelf at shallower water depths between 300 and 500 m. In contrast, the C20 [3]-ladderane monoether-PC lipid was most abundant in a core top sediment from 1500 m water depth. Both anammox-specific 16S rRNA gene copy numbers and the concentration of the C20 [3]-ladderane monoether-PC lipid increased downcore in sediments located at greater water depths, showing highest concentrations of 1.2 x 10**8 copies g**-1 sediment and 30 pg g**-1 sediment, respectively, at the deepest station of 3000 m water depth. This suggests that the relative abundance of anammox bacteria is higher in sediments at intermediate to deep water depths where carbon mineralization rates are lower but where anammox is probably more important than denitrification.

Zooplankton abundance and size structure in the North Atlantic from M87/1_615-1

Data on zooplankton abundance and biovolume were collected in concert with data on the biophysical environment during the development of the phytoplankton spring bloom at 4 stations in the North Atlantic. Station 1 in the Icelandic Basin was visited four times (26 March, 8 April, 18 April, 27 April), Station 2 in the southern Norwegian Sea was visited three times (30 March, 13 April, 23 April), Station 3 in the North Sea was visited twice (2 April, 15 April) and one intermediate station was visited once. The data were sampled by a Laser Optical Plankton Counter (LOPC, Rolls Royce Canada Ltd.) that was mounted on a carousel water sampler together with a Conductivity-Temperature-Depth sensor (CTD, SBE19plusV2, Seabird Electronics, Inc., USA). Based on the LOPC data, abundance (individuals/m**3) and biovolume (mm3/m**3) were calculated as described in the LOPC Software Operation Manual [(Anonymous, 2006), http://www.brooke-ocean.com/index.html]. LOPC data were regrouped into 49 size groups of equal log10 (body volume) increments (Edvardsen et al., 2002, doi:10.3354/meps227205). LOPC data quality was checked as described in Basedow et al. (2013, doi:10.1016/j.pocean.2012.10.005). CTD data were screened for erroneous (out of range) values and then averaged to the same frequency as the LOPC data (2 Hz). All data were processed using especially developed scripts in the python programming language. The LOPC is an optical instrument designed to count and measure particles (0.1 to 30 mm equivalent spherical diameter) in the water column (Herman et al., 2004; doi:10.1093/plankt/fbh095). The size of particles as equivalent spherical diameter (ESD) was computed as described in the manual (Anonymous, 2006), and in more detail in Checkley et al. (2008, doi:10.4319/lo.2008.53.5_part_2.2123) and Gaardsted et al. (2010, doi:10.1111/j.1365-2419.2010.00558.x).

Abundance of diatom cells in sediments from the Okhotsk and Bering Seas and the Northwest Pacific Ocean

The present investigation was targeted at diatom composition studies in the surface sediments (0-1 cm) sampled in the Sea of Okhotsk and the northwest Pacific in the depth range from 130 to 6110 m. The taxonomic analysis, as well as the quantitative (the diatom cell abundance per sediment dry weight unit) content and ecological group definition, was applied. Ten diatom taxa are the main body (80-100%) of the diatom assemblages: Bacterosira bathyomphala, Chaetoceros spp. (spores), Actinocyclus curvatulus, Thalassiosira latimarginata (group), T. antarctica (spores), Neodenticula seminae, Rhizosolenia hebetata f. hiemalis, Thalassiothrix longissima, Coscinodiscus marginatus, Coscinodiscus oculus iridis. The relative content of these species reflects the sedimentation conditions for different parts of the sea: the shelf, the continental slope, the open sea, and the ocean. The highest diatom content (45.6.3-60.0 mln per g of dry weight) was found for the surface sediments in the central part of the Sea of Okhotsk and the continental slope of western Kamchatka.

Zooplankton abundance and size structure in the North Atlantic from M87/1_701-1

Data on zooplankton abundance and biovolume were collected in concert with data on the biophysical environment during the development of the phytoplankton spring bloom at 4 stations in the North Atlantic. Station 1 in the Icelandic Basin was visited four times (26 March, 8 April, 18 April, 27 April), Station 2 in the southern Norwegian Sea was visited three times (30 March, 13 April, 23 April), Station 3 in the North Sea was visited twice (2 April, 15 April) and one intermediate station was visited once. The data were sampled by a Laser Optical Plankton Counter (LOPC, Rolls Royce Canada Ltd.) that was mounted on a carousel water sampler together with a Conductivity-Temperature-Depth sensor (CTD, SBE19plusV2, Seabird Electronics, Inc., USA). Based on the LOPC data, abundance (individuals/m**3) and biovolume (mm3/m**3) were calculated as described in the LOPC Software Operation Manual [(Anonymous, 2006), http://www.brooke-ocean.com/index.html]. LOPC data were regrouped into 49 size groups of equal log10 (body volume) increments (Edvardsen et al., 2002, doi:10.3354/meps227205). LOPC data quality was checked as described in Basedow et al. (2013, doi:10.1016/j.pocean.2012.10.005). CTD data were screened for erroneous (out of range) values and then averaged to the same frequency as the LOPC data (2 Hz). All data were processed using especially developed scripts in the python programming language. The LOPC is an optical instrument designed to count and measure particles (0.1 to 30 mm equivalent spherical diameter) in the water column (Herman et al., 2004; doi:10.1093/plankt/fbh095). The size of particles as equivalent spherical diameter (ESD) was computed as described in the manual (Anonymous, 2006), and in more detail in Checkley et al. (2008, doi:10.4319/lo.2008.53.5_part_2.2123) and Gaardsted et al. (2010, doi:10.1111/j.1365-2419.2010.00558.x).

Zooplankton abundance and size structure in the North Atlantic from M87/1_530-1

Data on zooplankton abundance and biovolume were collected in concert with data on the biophysical environment during the development of the phytoplankton spring bloom at 4 stations in the North Atlantic. Station 1 in the Icelandic Basin was visited four times (26 March, 8 April, 18 April, 27 April), Station 2 in the southern Norwegian Sea was visited three times (30 March, 13 April, 23 April), Station 3 in the North Sea was visited twice (2 April, 15 April) and one intermediate station was visited once. The data were sampled by a Laser Optical Plankton Counter (LOPC, Rolls Royce Canada Ltd.) that was mounted on a carousel water sampler together with a Conductivity-Temperature-Depth sensor (CTD, SBE19plusV2, Seabird Electronics, Inc., USA). Based on the LOPC data, abundance (individuals/m**3) and biovolume (mm3/m**3) were calculated as described in the LOPC Software Operation Manual [(Anonymous, 2006), http://www.brooke-ocean.com/index.html]. LOPC data were regrouped into 49 size groups of equal log10 (body volume) increments (Edvardsen et al., 2002, doi:10.3354/meps227205). LOPC data quality was checked as described in Basedow et al. (2013, doi:10.1016/j.pocean.2012.10.005). CTD data were screened for erroneous (out of range) values and then averaged to the same frequency as the LOPC data (2 Hz). All data were processed using especially developed scripts in the python programming language. The LOPC is an optical instrument designed to count and measure particles (0.1 to 30 mm equivalent spherical diameter) in the water column (Herman et al., 2004; doi:10.1093/plankt/fbh095). The size of particles as equivalent spherical diameter (ESD) was computed as described in the manual (Anonymous, 2006), and in more detail in Checkley et al. (2008, doi:10.4319/lo.2008.53.5_part_2.2123) and Gaardsted et al. (2010, doi:10.1111/j.1365-2419.2010.00558.x).

Zooplankton abundance and size structure in the North Atlantic from M87/1_699-1

Data on zooplankton abundance and biovolume were collected in concert with data on the biophysical environment during the development of the phytoplankton spring bloom at 4 stations in the North Atlantic. Station 1 in the Icelandic Basin was visited four times (26 March, 8 April, 18 April, 27 April), Station 2 in the southern Norwegian Sea was visited three times (30 March, 13 April, 23 April), Station 3 in the North Sea was visited twice (2 April, 15 April) and one intermediate station was visited once. The data were sampled by a Laser Optical Plankton Counter (LOPC, Rolls Royce Canada Ltd.) that was mounted on a carousel water sampler together with a Conductivity-Temperature-Depth sensor (CTD, SBE19plusV2, Seabird Electronics, Inc., USA). Based on the LOPC data, abundance (individuals/m**3) and biovolume (mm3/m**3) were calculated as described in the LOPC Software Operation Manual [(Anonymous, 2006), http://www.brooke-ocean.com/index.html]. LOPC data were regrouped into 49 size groups of equal log10 (body volume) increments (Edvardsen et al., 2002, doi:10.3354/meps227205). LOPC data quality was checked as described in Basedow et al. (2013, doi:10.1016/j.pocean.2012.10.005). CTD data were screened for erroneous (out of range) values and then averaged to the same frequency as the LOPC data (2 Hz). All data were processed using especially developed scripts in the python programming language. The LOPC is an optical instrument designed to count and measure particles (0.1 to 30 mm equivalent spherical diameter) in the water column (Herman et al., 2004; doi:10.1093/plankt/fbh095). The size of particles as equivalent spherical diameter (ESD) was computed as described in the manual (Anonymous, 2006), and in more detail in Checkley et al. (2008, doi:10.4319/lo.2008.53.5_part_2.2123) and Gaardsted et al. (2010, doi:10.1111/j.1365-2419.2010.00558.x).

Zooplankton abundance and size structure in the North Atlantic from M87/1_518-1

Data on zooplankton abundance and biovolume were collected in concert with data on the biophysical environment during the development of the phytoplankton spring bloom at 4 stations in the North Atlantic. Station 1 in the Icelandic Basin was visited four times (26 March, 8 April, 18 April, 27 April), Station 2 in the southern Norwegian Sea was visited three times (30 March, 13 April, 23 April), Station 3 in the North Sea was visited twice (2 April, 15 April) and one intermediate station was visited once. The data were sampled by a Laser Optical Plankton Counter (LOPC, Rolls Royce Canada Ltd.) that was mounted on a carousel water sampler together with a Conductivity-Temperature-Depth sensor (CTD, SBE19plusV2, Seabird Electronics, Inc., USA). Based on the LOPC data, abundance (individuals/m**3) and biovolume (mm3/m**3) were calculated as described in the LOPC Software Operation Manual [(Anonymous, 2006), http://www.brooke-ocean.com/index.html]. LOPC data were regrouped into 49 size groups of equal log10 (body volume) increments (Edvardsen et al., 2002, doi:10.3354/meps227205). LOPC data quality was checked as described in Basedow et al. (2013, doi:10.1016/j.pocean.2012.10.005). CTD data were screened for erroneous (out of range) values and then averaged to the same frequency as the LOPC data (2 Hz). All data were processed using especially developed scripts in the python programming language. The LOPC is an optical instrument designed to count and measure particles (0.1 to 30 mm equivalent spherical diameter) in the water column (Herman et al., 2004; doi:10.1093/plankt/fbh095). The size of particles as equivalent spherical diameter (ESD) was computed as described in the manual (Anonymous, 2006), and in more detail in Checkley et al. (2008, doi:10.4319/lo.2008.53.5_part_2.2123) and Gaardsted et al. (2010, doi:10.1111/j.1365-2419.2010.00558.x).