Tissue specific mercury concentrations in two catfish species from the Brazilian coast

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Studies on Bio-Geochemistry, Bio-Optical Properties and Satellite Validation of Coastal Waters of South Eastern Arabian Sea

In situ methods used for water quality assessment have both physical and time constraints. Just a limited number of sampling points can be performed due to this, making it difficult to capture the range and variability of coastal processes and constituents. In addition, the mixing between fresh and oceanic water creates complex physical, chemical and biological environment that are difficult to understand, causing the existing measurement methodologies to have significant logistical, technical, and economic challenges and constraints. Remote sensing of ocean colour makes it possible to acquire information on the distribution of chlorophyll and other constituents over large areas of the oceans in short periods. There are many potential applications of ocean colour data. Satellite-derived products are a key data source to study the distribution pattern of organisms and nutrients (Guillaud et al. 2008) and fishery research (Pillai and Nair 2010; Solanki et al. 2001. Also, the study of spatial and temporal variability of phytoplankton blooms, red tide identification or harmful algal blooms monitoring (Sarangi et al. 2001; Sarangi et al. 2004; Sarangi et al. 2005; Bhagirathan et al., 2014), river plume or upwelling assessments (Doxaran et al. 2002; Sravanthi et al. 2013), global productivity analyses (Platt et al. 1988; Sathyendranath et al. 1995; IOCCG2006) and oil spill detection (Maianti et al. 2014). For remote sensing to be accurate in the complex coastal waters, it has to be validated with the in situ measured values. In this thesis an attempt to study, measure and validate the complex waters with the help of satellite data has been done. Monitoring of coastal ecosystem health of Arabian Sea in a synoptic way requires an intense, extensive and continuous monitoring of the water quality indicators. Phytoplankton determined from chl-a concentration, is considered as an indicator of the state of the coastal ecosystems. Currently, satellite sensors provide the most effective means for frequent, synoptic, water-quality observations over large areas and represent a potential tool to effectively assess chl-a concentration over coastal and oceanic waters; however, algorithms designed to estimate chl-a at global scales have been shown to be less accurate in Case 2 waters, due to the presence of water constituents other than phytoplankton which do not co-vary with the phytoplankton. The constituents of Arabian Sea coastal waters are region-specific because of the inherent variability of these optically-active substances affected by factors such as riverine input (e.g. suspended matter type and grain size, CDOM) and phytoplankton composition associated with seasonal changes.

The Reception Of South-Eastern Cultural Patterns: Late Neolithic And Nascent Bronze Age Flint Working In The Vistula Drainage Basin. The Case Of Trough-Like Retouch

This publication constitutes the fruits of National Science Centre research projects (grant no 2011/01/M/HS3/02142 – 6 articles) and the National Programme for the Development of the Humanities (grant no 0108/NPH3/H12/82/2014 – 3 articles). We would like to acknowledge and at the same time express our sincere gratitude for the generosity shown by the following at the Adam Mickiewicz University in making this publication possible: the Dean of the Department of History, Institute of Pre-history and the Eastern Institute.

Five years retrospective cohort analysis of treatment outcomes of TB-HIV patients at a PEPFAR/DOTS Centre in South Eastern Nigeria.

Background: Human immunodeficiency virus (HIV) associated tuberculosis (TB) remains a major global public health challenge, with an estimated 1.4 million patients worldwide. Co-infection with HIV leads to challenges in the diagnosis and treatment of patients. Objectives: The aim of this study was to assess treatment outcomes of a cohort of smear positive TB-HIV co-infected patients over a five-year study period. Methods: A retrospective cohort study of 600 smear-positive tuberculosis patients registered at the chest unit of the University of Nigeria Teaching Hospital, Enugu from January 2008 to December 2012 was done. The data was analyzed using SPSS Version 17. Results: One hundred and three (17.2%) of the patients were co-infected with TB/HIV, while 398 (66.3%) and 99 (16.5%) were HIV negative and unknown respectively. Among the co-infected patients, 45(43.7%) were cured as against 222(55.8%) in the TBHIV negatives (Z=4.53, p=0.000, 95%CI= 0.12-0.34). Respectively in the TB-HIV co-infected and TB-HIV negative patients, treatment completed were 21(20.4%) and 71(17.8%) (Z=9.15, p=0.000, 95%= 0.4035-0.60); defaulted 19(18.5%) vs 70 (17.6%) (Z=9.29, p=0.000, 95%CI=0.42-0.60), died 10(9.7%) vs. 6(1.5%) (Z=1.22, p=0.224, 95%CI= -0.0286-0.1086), and failures were 1(0.9%) vs. 7(1.8%) (Z=2.48, p=0.013, 95%CI=0.04-0.10). Treatment success rate was lower in TB-HIV co-infected patients, 64.1% compared to TB-HIV negative patients with 73.6%. Also those that defaulted among the TB-HIV co-infected patients (18.5%) were higher than 17.6% among TB-HIV negative patients, a difference of 0.9%. Conclusion: Findings demonstrate that HIV co-infection affects TB treatment outcomes adversely. Treatment adherence, timely and sustained access to antiretroviral therapy for TB/HIV co-infected patients are important.

Population structure of the black seabream Spondyliosoma cantharus along the south-west Portuguese coast inferred from otolith chemistry

The chemistry of black seabream Spondyliosoma cantharus otoliths from three main fishery grounds (Olhao, Sagres and Sesimbra) located along c. 400 km of the Portuguese south and west coasts was examined. Element:Ca ratios were determined in whole otoliths and otolith cores of young adult specimens of 23 years of age. Using the data from whole otoliths, it was possible to discriminate among S. cantharus from the three fishing grounds with an average accuracy of 91%. Differences among fishing grounds were significant for all element:Ca ratios, and otoliths from Sagres had significantly higher levels of all ratios compared to the other fishing grounds. In contrast, the chemical composition of the otolith core, representative of the larval stage, showed limited variation among the fishing grounds, with an average discrimination accuracy of only 44%, although the Mg:Ca ratio of the otolith cores was also significantly higher for the Sagres samples. The data suggest that larval stages experienced a homogenous environment consistent with an offshore oceanic spawning. Juveniles appeared to display local residency on the inshore fishing grounds, areas probably characterized by greater environmental heterogeneity. Spondyliosoma cantharus population structure is consistent with distinct local population units that share a spawning ground providing recruits to different coastal fishery areas.

Os anfíbios da restinga de Grumari, RJ, Brasil, e a comunidade de folhiço em duas zonas arbóreas

Apesar dos habitats de restinga representarem aproximadamente 5.000 km da costa brasileira, o conhecimento disponível sobre a composição da fauna de anuros nestes habitats ainda é restrito a poucas áreas. Estes habitats encontram-se sob intensa pressão imobiliária, com uma densidade demográfica cinco vezes maior do que a média do país, levando a uma ocupação descomedida, degradação e eventual perda destes importantes habitats. Isso é especialmente preocupante para as populações de vertebrados terrestres endêmicos e ameaçados de extinção, devido à dificuldade de recuperação da vegetação das restingas. Atualmente, os remanescentes de restinga ao longo da costa brasileira são representados por fragmentos completamente isolados. Esta é a primeira aproximação da lista de anfíbios da restinga de Grumari, inserida no Parque Natural Municipal de Grumari (PNMG), município do Rio de Janeiro, sudeste do Brasil. É também a primeira pesquisa a analisar a comunidade de anuros de folhiço, e a obter dados de densidade, para as restingas brasileiras. A área está situada no Domínio da Mata Atlântica. O estudo foi conduzido de maio de 2009 a dezembro de 2010 utilizando dois métodos de amostragem: parcelas grandes ou plots de 16 m (4x4 m) e transecções visuais/acústicas. Registramos 22 espécies de anfíbios anuros distribuídas em seis famílias: Leptodactylidae (3), Craugastoridae (1), Bufonidae (1), Strabomantidae (1), Microhylidae (2) e Hylidae (14). Ocorreram dez espécies de anuros de folhiço em 2560 m de chão de floresta amostrados com a metodologia de parcelas grandes durante o estudo. Na zona fechada de pós-praia ocorreram apenas sete espécies de anuros de folhiço, enquanto na mata de restinga ocorreram as dez espécies registradas para a restinga. A densidade geral estimada de anuros de folhiço para a restinga de Grumari foi de 13,1 indivíduos por 100m, superior a cinco de seis estudos publicados com dados de densidade de anuros de folhiço na Mata Atlântica. A biomassa total estimada foi de 13131 g/ha, podendo ser considerada a maior biomassa de anurofauna de folhiço globalmente. Não houve diferença estatisticamente significativa entre as zonas quanto aos parâmetros da comunidade (riqueza, densidade e biomassa), mesmo havendo diferença entre os parâmetros ambientais mensurados nas duas zonas. Os fatores que melhor explicaram a riqueza, a densidade e a biomassa na restinga de Grumari durante a estação chuvosa foram, respectivamente, a temperatura, o diâmetro das árvores/arbustos e o número de árvores/arbustos. A presença de espécies ameaçadas de extinção e endêmicas para o estado do Rio de Janeiro e Mata Atlântica evidencia que a restinga de Grumari é uma área essencial para a conservação da anurofauna dos remanescentes deste habitat no Brasil. Além disso, Grumari é a restinga com maior riqueza de espécies do estado e a segunda maior entre todas as áreas de restinga estudadas até o momento, quanto à anurofauna.

Polimorfismos do gene da tiopurina metiltransferase (TPMT) em pacientes com doenças inflamatórias intestinais: avaliação da prevalência e correlação com efeitos colaterais

A azatioprina e a 6 mercaptopurina (6-MCP) são drogas muito utilizada no tratamento das doenças inflamatórias intestinais (DII), porém estão associadas a vários efeitos colaterais. A determinação prévia do genótipo da tiopurina metiltransferase (TPMT) pode identificar pacientes de maior risco de toxicidade a droga. Os objetivos deste estudo foram avaliar a prevalência dos polimorfismos do gene da TPMT em pacientes com DII acompanhados no Hospital Universitário Pedro Ernesto (HUPE) da UERJ, comparando com a prevalência em outras populações e correlacionar a presença desses polimorfismos com a toxicidade às drogas. Foram avaliados 146 pacientes com doença de Crohn (DC) e 73 com retocolite ulcerativa idiopática (RCUI). A pesquisa dos principais genótipos da TPMT (*2, *3, *3C) foi realizada por técnicas de PCR (alelo específico e RFLP). Os achados clínicos foram correlacionados com a genotipagem e avaliados por análises multivariadas. Dentre os pacientes que estavam em uso de azatioprina, 14 apresentaram pancreatite ou elevação de enzimas pancreáticas, 6 apresentaram hepatoxicidade e 2 evoluíram com neutropenia. Os polimorfismos do gene da TPMT foram observados em 37 dos 219 pacientes (8 foram heterozigotos para o genótipo *2, 11 heterozigotos para *3A e 18 foram heterozigotos para o polimorfismo *3C). Não foi observado nenhum homozigoto polimórfico. Uma correlação positiva foi observada entre a elevação de enzimas pancreáticas e os genótipos *2 e *3C. A prevalência dos polimorfismos neste estudo (16,89%) foi maior que a descrita para população caucasiana e em outros estudos brasileiros. Apesar do predomínio do genótipo *3C, não houve ocorrência exclusiva de um polimorfismo, conforme observado em outras populações. A população brasileira devido à sua miscigenação têm características genotípicas próprias diferentes do outros países do mundo. Dois polimorfismos da TPMT (*2 e *3C) estiveram associados à toxicidade ao uso da azatioprina em pacientes com DII no sudeste do Brasil. O teste genético pode auxiliar na escolha da melhor droga e na dose ideal para os pacientes portadores de DII antes do início do tratamento.

Anti-poliovirus activity of Baccharis dracunculifolia and propolis by cell viability determination and real-time PCR

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Molecular Surveillance of the Newcastle Disease Virus in Domestic and Wild Birds on the North Eastern Coast and Amazon Biome of Brazil

Brazil is one of the world's largest countries with a rich diversity of wildlife, including resident and migratory wild birds, which may be natural reservoirs of the Newcastle disease virus (NDV). Because Brazil is a major global exporter of chicken meat, the emergence of such a disease may have a huge negative impact not only on the economy due to trade restrictions and embargoes, but also on the quality of life of the population. Samples were collected from 1,022 asymptomatic domestic and wild birds from the Brazilian coast and the Amazon region using tracheal/cloacal swabs and tested by RT-qPCR. The results showed 7 (0.7%) birds were positive for NDV. The positive samples were then isolated in embryonated chicken eggs and their matrix protein genes were partially sequenced, revealing a low-pathogenicity NDV. This study confirms the maintenance of the velogenic-NDV free status of Brazil.

Molecular surveillance of the Newcastle disease virus in domestic and wild birds on the North Eastern Coast and Amazon biome of Brazil

Brazil is one of the world's largest countries with a rich diversity of wildlife, including resident and migratory wild birds, which may be natural reservoirs of the Newcastle disease virus (NDV). Because Brazil is a major global exporter of chicken meat, the emergence of such a disease may have a huge negative impact not only on the economy due to trade restrictions and embargoes, but also on the quality of life of the population. Samples were collected from 1,022 asymptomatic domestic and wild birds from the Brazilian coast and the Amazon region using tracheal/cloacal swabs and tested by RT-qPCR. The results showed 7 (0.7%) birds were positive for NDV. The positive samples were then isolated in embryonated chicken eggs and their matrix protein genes were partially sequenced, revealing a low-pathogenicity NDV. This study confirms the maintenance of the velogenic-NDV free status of Brazil.

Climatic evolution of eastern South America during the last deglaciation: a paleoceanographic approach

Para dar suporte ao atual debate sobre as consequências climáticas da liberação antropogênica de CO2 na atmosfera, o refinamento do conhecimento sobre mudanças climáticas e oceanográficas no passado é necessário. A Circulação de Revolvimento Meridional do Atlântico (CRMA) tem papel fundamental na oceanografia e clima das áreas sob influência do Oceano Atlântico, controlando diretamente a estratificação e distribuição de massas d\'água, a quantidade de calor transportada pelo oceano e os ciclo e armazenamento de compostos químicos, como o CO2 em mar profundo. A formação e circulação da Água Intermediária Antártica (AIA), envolvida no transporte de calor e sal para o giro subtropical do Hemisfério Sul e nas teleconexões climáticas entre altas e baixas latitudes, é componente importante do ramo superior da CRMA. A reconstrução de propriedades de massas de água intermediárias é, portanto, importante para a compreensão dos sistemas de retroalimentação entre oceano-clima. No entanto, informações quanto a evolução da AIA continuam limitadas. Oscilações da CRMA e consequentes mudanças na distribuição de calor tem implicações importantes para o clima Sul Americano, influenciando a disponibilidade de umidade para o Sistema de Monções Sul Americano (SMSA), via temperatura da superfície marinha e posicionamento da Zona de Convergência Intertropical. Neste trabalho nós reconstruímos a assinatura isotópica da AIA durante os estágios isotópicos marinhos 2 e 3 (41-12 cal ka AP) usando isótopos de carbono e oxigênio de foraminíferos bentônicos (gêneros Cibicidoides e Uvigerina) de um testemunho de sedimentos marinhos datados por radiocarbono (1100 m de profundidade e a 20°S na costa do Brasil). Concluímos que propriedades físicas e químicas da AIA mudaram durante os estadiais Heinrich 3 e 4, provavelmente como consequência de enfraquecimento da CRMA durante estes períodos. Também reconstruímos as condições continentais do leste brasileiro entre o último máximo glacial e a deglaciação (23-12 cal ka AP) baseadas em razões Ti/Ca de nosso testemunho de sedimentos marinhos como indicadoras de aporte terrígeno do Rio Doce. A maior parte da chuva que cai na Bacia do Rio Doce está relacionada a atividade do SMAS. Nosso registro de Ti/Ca em conjunto com \'\'delta\' POT.18\'O de espeleotemas da Caverna Lapa Sem Fim, também no leste do Brasil, sugere diminuição marcante da chuva durante o interestadial Bølling-Allerød, provavelmente relacionada a enfraquecimento do SMAS. Ademais comparamos as razões de Ti/Ca com dados de saída da rodada SYNTRACE do modelo climático CCSM3 com forçantes transientes para a última deglaciação. Os registros geoquímicos e a saída do modelo mostram resultados consistentes entre si e sugerem que o leste da América do Sul passou pelo seu período mais seco de toda a última deglaciação durante o interestadial Bølling-Allerød, provavelmente relacionado ao enfraquecimento do SMAS.

Nearshore fish resources and fisheries around Kigoma, eastern coast of Lake Tanganyika

The fish habitats along an inshore water stretch along the eastern/central coast of Lake Tanganyika are discussed and a quantitative analysis of the species composition, distribution and abundance of the littoral fishes within the area of study is presented. Seventy-one species of fish belonging to 48 genera and to 15 fish families were collected and identified during the study. The majority of species belonged to the Cichlidae family. Intensive beach seining for clupeids is suggested as one of the causes of low fish biomass in the area surveyed. The areas south of Kigoma appeared to contain more fish, with average catch rates of 11.7 kg/haul than those north of Kigoma where average catch rates of 7.6 kg/haul were recorded. Some suggestions for improved management of these resources are given.

Geophysical Constraints on Structure and Tectonics of the Eastern Arabian Sea and the Adjoining West Coast of India with Special Reference to the Kerala Basin

The main objective of the present study is to model the gravity fields in terms of lithospheric structure below the western continental margin of India (WCMI) identify zones of crustal mass anomalies and attempt to infer the location of Ocean Continent transition in the Arabian Sea. In this study, the area starting from the western shield margin to the region covering the deep oceanic parts of the Arabian Sea which is bounded by Carlsberg and Cerg and Central Indian ridges in the south, eastern part of the Indus Cone in the west and falling between 630E and 800E longitudes, and 50N - 240N latitudes has been considered. The vast amount of seismic reflection and refraction data in the form of crustal velocities, basement configuration and crustal thicknesses available for the west coast as well as the eastern Arabian Sea has been utilized for this purpose

A new species of Trypanosyllis (Polychaeta : Syllidae) from Brazil, with a redescription of Brazilian material of Trypanosyllis zebra

A new species of Trypanosyllis was found in a collection of polychaetes living on algae, sponges, ascidians and sabelariid reef; at the intertidal zone of a rocky shore, at Praia do Guarau, south-eastern Brazil. Trypanosyllis aurantiacus sp. nov., is characterized by having an orange body in life, with dark red antennae and cirri throughout, falcigers with short, sub-bidentate blades, and parapodia with thick, distally sharp, protruding aciculae, two to three aciculae on each anterior parapodium, two aciculae on midbody segments, single acicula per parapodium on posteriormost chaetigers. Trypanosyllis aurantiacus sp. nov., is compared with the most similar congeners and a redescription of Trypanosyllis zebra, based on Brazilian specimens collected from similar environments at nearby beaches, is given.

New and little-known cheilostomatous Bryozoa from the south and southeastern Brazilian continental shelf and slope

The present paper reports on 22 species collected by the Brazilian Program of Living Resources in the Exclusive Economic Zone (REVIZEE). A new genus and species of Cribrilinidae, Corbuliporina crepida n. gen. et sp., is described, along with seventeen other new species: Chaperia brasiliensis n. sp., Amastigia aviculifera n. sp., Isosecuriflustra pinniformis n. sp., Cellaria subtropicalis n. sp., Melicerita brasiliensis n. sp., Arachnopusia haywardi n. sp., Smittina migottoi n. sp., Hippomenella amaralae n. sp., Rogicka joannae n. sp., Malakosaria atlantica n. sp., Turbicellepora winstonae n. sp., Rhynchozoon coalitum n. sp., Stephanollona angusta n. sp., Stephanollona arborescens n. sp., Aulopocella americana n. sp., Conescharellina cookae n. sp. and Conescharellina bocki n. sp. Chorizopora brongniartii (Audouin, 1826) is recorded for the first time in Brazilian waters and a new combination for Rhynchozoon arborescens Canu & Bassler, 1928 is established. New illustrations and taxonomic remarks are included for two little-known species from Brazil, Rogicka scopae (Canu & Bassler, 1928) and Fenestrulina ampla Canu & Bassler, 1928. A compilation of species recorded from deeper waters of the Brazilian coast is included.