Electron microscopy at the Marine Biological Association: 1961-2006. Occasional Publication of the Marine Biological Association 23

This memoir recalls the instruments in the Electron Microscope Unit and the staff, students and visitors who used them. Accessory equipment is also described because much of it was innovative and built in the laboratory, also, much of the science would not have been possible without it. This publication includes 33 figures, 4 plates and 7 appendices. The appendices record that 54 MBA staff and 196 students and visitors have used the microscopes and that 413 titles have been published (to the end of 2006).

The Russell Cycle. An update and review of trends in zooplankton and fish larvae off Plymouth 1924-2009. Occasional Publication of the Marine Biological Association 24

Regular plankton sampling off Plymouth by the Marine Biological Association (MBA) has been carried out from the early 1900s. Much of the sample analysis and description of the results was carried out by Sir Frederick Russell and Professor Alan Southward (AJS), the latter having completed the organisation and transfer of the paper records to digital files. The current authors have transferred the main data files of AJS on zooplankton and fish larvae to the MBA long-term database (including various editing and checking against original analysis records and published data) together with adding the data for 2002-2009. In this report the updated time-series are reviewed in the context of earlier work, particularly with respect to the Russell Cycle. It is not intended as an exhaustive analysis. Brief details of the sampling and comments on data processing are given in an appendix.

Marine Zooplankton of Southern Britain - Part 1: Radiolaria, Heliozoa, Foraminifera, Ciliophora, Cnidaria, Ctenophora, Platyhelminthes, Nemertea, Rotifera and Mollusca. Occasional Publication of the Marine Biological Association 25

This series of three guides (of which this is Part 1) collates taxonomic identification information for the zooplankton groups recorded off south-west Britain , primarily for local identification and training purposes. However, because prevailing currents also bring oceanic zooplankton into the English Channel , the range of species sampled off Plymouth covers the majority found over the shallower parts of northern European continental shelf (excluding the Mediterranean Sea ), so the guides should be more widely useful and hopefully make tackling zooplankton identification easier for a wider audience. The commonest truly planktonic species and the most widely studied groups are covered in most detail, but some information is also included on benthic, epibenthic and parasitic species that are sampled occasionally. For all groups there is at least information on their morphology, guidance on their identification and bibliographies giving identification resources.

Marine Zooplankton of Southern Britain - Part 2: Arachnida, Pycnogonida, Cladocera, Facetotecta, Cirripedia and Copepoda. Occasional Publication of the Marine Biological Association 26

This series of three guides (of which this is Part 2) collates taxonomic identification information for the zooplankton groups recorded off south-west Britain , primarily for local identification and training purposes. However, because prevailing currents also bring oceanic zooplankton into the English Channel , the range of species sampled off Plymouth covers the majority found over the shallower parts of northern European continental shelf (excluding the Mediterranean Sea ), so the guides should be more widely useful and hopefully make tackling zooplankton identification easier for a wider audience. The commonest truly planktonic species and the most widely studied groups are covered in most detail, but some information is also included on benthic, epibenthic and parasitic species that are sampled occasionally. For all groups there is at least information on their morphology, guidance on their identification and bibliographies giving identification resources.

Identification of the copepodite developmental stages of twenty-six North Atlantic copepods. Occasional Publication of the Marine Biological Association No. 21 (revised edition)

This identification guide to the copepodite developmental stages of twenty-six North Atlantic copepods has been revised and extended, to include new information, to update the taxonomy and to give additional details on how to determine sex in the later copepodite stages of gymnoplean copepods.

Aquatic Life Cycle Strategies: Survival in a variable environment. Occasional Publication of the Marine Biological Association 6

In a rapidly changing world it is essential that we should understand the factors controlling the sustainability of ecosystems. In aquatic ecosystems, both sensitivity and recoverability are influenced strongly by the life cycles of the organisms concerned. The response of individual species to change and their chances of survival in a variable environment can be affected dramatically by the timing and location of disturbances relative to their natural rhythms of fertilisation, dispersal and development. This book illustrates the wide range of issues that must be addressed to understand such relationships. Its purpose is to consider those aspects of life history that make aquatic organisms especially susceptible to (or adaptable to) changing environments -and hence to discuss links between impacts on individuals and the consequent effects on populations and communities.

The Severn Estuary: Sediments, contaminants and biota. Occasional Publication of the Marine Biological Association 19

This report about the Severn Estuary provides an up to date appraisal of the following issues: Transport and fate of sediments; Transport, fate and trends in contaminants; Bioavailability of contaminants; Consequences for biota, and pinpoints the major knowledge gaps.

Feeding of Calanus finmarchicus and Oithona similis on the microplankton assemblage in the Irminger Sea, North Atlantic

The present investigation reviews published data on the feeding rates and prey selection of Oithona similis females, Calanus finmarchicus nauplii and females in the Irminger Sea in April/May and July/August 2002. Our aim was to examine how the feeding rates and prey selection of these three copepod stages respond to concomitant changes in microplankton community composition and prey abundance. Copepods typically ingested prey overall according to its ambient concentration although significant species and stage-specific differences in prey-type ingestion and selection were apparent. Despite being of comparable weight, the ingestion rates of C. finmarchicus nauplii were always higher than those of the O. similis females. Moreover, C. finmarchicus nauplii and O. similis females fed preferentially on diatoms and ciliates respectively, whereas adult female C. finmarchicus showed limited prey selectivity. Copepod grazing impact on total and on ciliates/dinoflagellates standing stock was <0.5 and <2%, respectively. We attribute this result to a combination of low grazing rates, low copepod abundance and low microplankton biomass, all of which are indicative of the non-bloom conditions under which these experiments were conducted. The differences in copepod feeding rates and prey selection we report reflect species and stage-specific eco-physiological adaptations, which may act as important driving forces for marine ecosystem structuring and functioning.

Modelling a light-driven phytoplankton succession

We used a numerical model to investigate if and to what extent cellular photoprotective capacity accounts for succession and vertical distribution of marine phytoplankton species/groups. A model describing xanthophyll photoprotective activity in phytoplankton has been implemented in the European Regional Sea Ecosystem Model and applied at the station L4 in the Western English Channel. Primary producers were subdivided into three phytoplankton functional types defined in terms of their capacity to acclimate to different light-specific environments: low light (LL-type), high light (HL-type) and variable light (VL-type) adapted species. The LL-type is assumed to have low cellular level of xanthophyll-cycling pigments (PX) relative to the modelled photosynthetically active pigments (chlorophyll and fucoxanthin (FUCO) = PSP). The HL-type has high PX content relative to PSP while VL-type presents an intermediate PX to PSP ratio. Furthermore, the VL-type is capable of reversibly converting FUCO to PX and synthesizing new PX under high-light stress. In order to reproduce phytoplankton community succession with each of the three groups being dominant in different periods of the year, we had also to assume reduced grazing pressure on HL-adapted species. Model simulations realistically reproduce the observed seasonal patterns of pigments and nutrients highlighting the reasonability of the underpinning assumptions. Our model suggests that pigment-mediated photophysiology plays a primary role in determining the evolution of marine phytoplankton communities in the winter-spring period corresponding to the shoaling of the mixed layer and the increase of light intensity. Grazing selectivity however contributes to the phytoplankton community composition in summer.

Bridging the gap between marine biogeochemical and fisheries sciences; configuring the zooplankton link

Exploring climate and anthropogenic impacts on marine ecosystems requires an understanding of how trophic components interact. However, integrative end-to-end ecosystem studies (experimental and/or modelling) are rare. Experimental investigations often concentrate on a particular group or individual species within a trophic level, while tropho-dynamic field studies typically employ either a bottom-up approach concentrating on the phytoplankton community or a top-down approach concentrating on the fish community. Likewise the emphasis within modelling studies is usually placed upon phytoplankton-dominated biogeochemistry or on aspects of fisheries regulation. In consequence the roles of zooplankton communities (protists and metazoans) linking phytoplankton and fish communities are typically under-represented if not (especially in fisheries models) ignored. Where represented in ecosystem models, zooplankton are usually incorporated in an extremely simplistic fashion, using empirical descriptions merging various interacting physiological functions governing zooplankton growth and development, and thence ignoring physiological feedback mechanisms. Here we demonstrate, within a modelled plankton food-web system, how trophic dynamics are sensitive to small changes in parameter values describing zooplankton vital rates and thus the importance of using appropriate zooplankton descriptors. Through a comprehensive review, we reveal the mismatch between empirical understanding and modelling activities identifying important issues that warrant further experimental and modelling investigation. These include: food selectivity, kinetics of prey consumption and interactions with assimilation and growth, form of voided material, mortality rates at different age-stages relative to prior nutrient history. In particular there is a need for dynamic data series in which predator and prey of known nutrient history are studied interacting under varied pH and temperature regimes.