Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus

Human respiratory syncytial virus (HRSV) is the major cause of lower respiratory tract infections in children under 5 years of age and the elderly, causing annual disease outbreaks during the fall and winter. Multiple lineages of the HRSVA and HRSVB serotypes co-circulate within a single outbreak and display a strongly temporal pattern of genetic variation, with a replacement of dominant genotypes occurring during consecutive years. In the present study we utilized phylogenetic methods to detect and map sites subject to adaptive evolution in the G protein of HRSVA and HRSVB. A total of 29 and 23 amino acid sites were found to be putatively positively selected in HRSVA and HRSVB, respectively. Several of these sites defined genotypes and lineages within genotypes in both groups, and correlated well with epitopes previously described in group A. Remarkably, 18 of these positively selected tended to revert in time to a previous codon state, producing a flipflop phylogenetic pattern. Such frequent evolutionary reversals in HRSV are indicative of a combination of frequent positive selection, reflecting the changing immune status of the human population, and a limited repertoire of functionally viable amino acids at specific amino acid sites.

Atuação fisioterapêutica na lesão medular em unidade de terapia intensiva: Atualização de literatura

Objective. Collate and update knowledge in relation to physical therapy in spinal cord injury (SCI) in the intensive care unit (ICU). Method. We performed a literature update in the databases Lilacs, PubMed and Scielo, crossing the descriptors spinal cord injury, cinesiotherapy, physiotherapy, mobilization, rehabilitation, intensive care unit, respiratory therapy and electrotherapy in the period of 2005 to 2010. Results. We found 21 studies, however, only five articles met the inclusion criteria. Kinesiotherapy is essential since the phase of spinal shock, since it favors the maintenance of joint range of motion and flexibility, and to prevent circulatory complications caused/ resulted from prolonged immobilization in bed. Respiratory therapy promotes bronchial hygiene, correction of abnormal respiratory patterns and respiratory diseases. The electrotherapy is a feature still little used by physiotherapists in the intensive care units. Conclusions. The physical therapy in SCI in ICU is focused on motor rehabilitation through kinesiotherapy and intervention through the respiratory bronchial hygiene and training of respiratory muscles. New treatment modalities such as electrotherapy, there have been in intensive environment, there is a need for more studies to confirm benefits and risks of this feature in the spinal cord.

Caracterização radiométrica e de exalação de Radônio em rochas ornamentais silicáticas beneficiadas no Estado do Espírito Santo

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Estudo analítico das endoscopias das vias aéreas de equinos PSI durante o período de 1993-2003 e avaliação dos resultados de procedimentos cirúrgicos laringeanos realizados no Jockey Club de São Paulo durante o período de 1998-2003

Pós-graduação em Medicina Veterinária - FMVZ

Caracterização molecular de cepas do vírus respiratório sincicial isoladas de casos de infecção respiratória aguda na cidade de Belém, Pará, Brasil nos anos de 2000 a 2006

As doenças do trato respiratório são as principais queixas nos serviços de atendimento médico, sendo as infecções respiratórias agudas (IRA) as manifestações mais comuns, principalmente em crianças menores de cinco anos de idade. Em países em desenvolvimento as IRA constituem um sério problema de saúde pública. Em todo mundo estima-se que ocorram cerca de dois milhões de mortes devido as IRA a cada ano. Dentre os agentes causais das mesmas, destaca-se o Vírus Respiratório Sincicial (VRS), especialmente por causar doença grave em crianças menores de dois anos. Com o objetivo de gerar dados sobre a epidemiologia molecular deste vírus, foram analisadas amostras colhidas de pacientes com IRA no período de 2000 a 2006 na cidade de Belém, Pará. Foram utilizados testes de imunofluorescência indireta (IFI) para caracterização antigênica dos vírus isolados e RT-PCR para os genes codificadores das proteínas G e F, que foram em seguida parcialmente seqüenciados. Dentro do período estudado, 153 amostras positivas para VRS foram detectadas. A faixa etária de 0-4 anos foi a que concentrou maior número de casos (n=138; 90,19%). Em relação ao perfil sazonal, o pico de atividade do VRS ocorreu nos primeiros seis meses do ano, estando associado principalmente ao período de troca da estação chuvosa para um período de menor pluviosidade. Houve co-circulação dos subgrupos A e B nos anos de 2001 e 2003. Em 2000, 2005 e 2006 somente o subgrupo A circulou. Entretanto no ano de 2004 foi registrada a ocorrência somente do subgrupo B. Dentro do período estudado, genótipos distintos da proteína G do subgrupo A (GA2 e GA5) e do subgrupo B (SAB1 e SAB3) foram detectados, indicando o primeiro relato da circulação do genótipo SAB1 na América do Sul. Em 2004, um cluster diferenciado dos demais genótipos circulantes foi encontrado, sendo este denominado BRB1. A análise do gene codificador da proteína F permitiu a identificação de mutações na sequência nucleotídica resultando em trocas na cadeia aminoacídica da mesma. Este estudo representa o primeiro relato sobre dados da epidemiologia molecular do Vírus Respiratório Sincicial na região Norte do Brasil.

Análise epidemiológica e caracterização parcial do gene F dos Metapneumovirus Humano detectados a partir de casos de infecção respiratória aguda na Região Norte do Brasil

As doenças do trato respiratório são as principais queixas nos serviços de atendimento médico, sendo as infecções respiratórias agudas (IRA) as manifestações mais comuns, principalmente em crianças menores de cinco anos de idade. Em países em desenvolvimento, as IRA constituem um sério problema de saúde pública. Em todo mundo estima-se que ocorram cerca de 2 milhões de mortes devido as IRA a cada ano. Dentre os agentes causais de IRA, destaca-se o Metapneumovírus Humano (HMPV), especialmente por causar doença grave em crianças menores de 5 anos. Com o objetivo de gerar dados sobre a epidemiologia molecular deste vírus, foram analisadas amostras colhidas de pacientes com IRA no período de Janeiro de 2009 a Dezembro de 2011 oriundas da Região Norte (Pará, Amazonas, Acre, Amapá e Roraima). Foi utilizado a técnica de RT-PCR em Tempo Real (qRT-PCR) para a detecção do vírus através da amplificação do gene N e RT-PCR para o gene codificador da proteína F, que foi em seguida parcialmente sequenciado. Dentro do período de estudo, foram testadas 2966 amostras, das quais 129 positivas para HMPV. A faixa etária de 0-4 anos foi a que concentrou maior número de casos (n=84; 65,89%) em toda a região Norte. Na identificação viral, constatou-se a co-circulação dos subgrupos A2 e B2 durante os três anos do estudo. Os subgrupos A1 e B1 não circularam na região durante o período estudado. Este estudo representa o primeiro relato sobre dados da epidemiologia molecular do Metapneumovírus Humano na região Norte do Brasil.

Epidemiologia molecular das estirpes LaSota e São João do Meriti do vírus da Doença de Newcastle

Pós-graduação em Microbiologia Agropecuária - FCAV

Animal models in chronic obstructive pulmonary disease-an overview

Chronic obstructive pulmonary disease (COPD) is characterized by progressive airway obstruction resultant from an augmented inflammatory response of the respiratory tract to noxious particles and gases. Previous reports present a number of different hypotheses about the etiology and pathophysiology of COPD. The generating mechanisms of the disease are subject of much speculation, and a series of questions and controversies among experts still remain. In this context, several experimental models have been proposed in order to broaden the knowledge on the pathophysiological characteristics of the disease, as well as the search for new therapeutic approaches for acute or chronically injured lung tissue. This review aims to present the main experimental models of COPD, more specifically emphysema, as well as to describe the main characteristics, advantages, disadvantages, possibilities of application, and potential contribution of each of these models for the knowledge on the pathophysiological aspects and to test new treatment options for obstructive lung diseases.

Detection of an untyped strain of bovine respiratory syncytial virus in a dairy herd

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Relação entre poluição do ar e internações hospitalares por doenças respiratórias e cardiovascular em uma cidade do interior do Estado de São Paulo

Pós-graduação em Fisioterapia - FCT

Nitric Oxide in the Exhaled Breath Condensate of Healthy Volunteers Collected With a Reusable Device

Background: The analysis of exhaled breath condensate (EBC) is a non-invasive technique that enables the determination of several volatile and nonvolatile substances produced in the respiratory tract, whose measurement may be useful for the diagnosis and monitoring of several respiratory diseases. Objective: The aim of this study was to produce a low-cost reusable device in order to sample exhaled breath condensate in healthy adult volunteers, and to determine the concentration of nitric oxide in the sample collected. Material and methods: The apparatus was made with a U-shaped tube of borosilicate glass. The tube was placed in a container with ice, and unidirectional respiratory valves were fitted to the distal end. Afterwards, nitric oxide was measured in the exhaled breath condensate (EBC) by chemiluminescence. Results: The total cost of the device was $120.20. EBC samples were obtained from 116 volunteers of both sexes, aged between 20 and 70. The mean volume of exhaled breath condensate collected during 10 minutes was 1.0 +/- 0.6 mL, and the mean level of nitric oxide was 12.99 +/- 14.38 mu M (median 8.72 mu M). There was no correlation between the nitric oxide levels in the exhaled breath condensate and age or gender. Conclusion: We demonstrate that it is possible to fabricate a low-cost, efficient, reusable device in order to collect and determine nitric oxide levels in EBC. We have identified no correlation between the nitric oxide levels present in the EBC obtained with this method with either age or sex. (C) 2011 SEPAR. Published by Elsevier Espana, S.L. All rights reserved.

Experimental Basis and New Insights for Cell Therapy in Chronic Obstructive Pulmonary Disease

Chronic Obstructive Pulmonary Disease (COPD) can be briefly described as air flow limitation and chronic dyspnea associated to an inflammatory response of the respiratory tract to noxious particles and gases. Its main feature is the obstruction of airflow and consequent chronic dyspnea. Despite recent advances, and the development of new therapeutic, medical and clinical approaches, a curative therapy is yet to be achieved. Therapies involving the use of tissue-specific or donor derived cells present a promising alternative in the treatment of degenerative diseases and injuries. Recent studies demonstrate that mesenchymal stem cells have the capacity to modulate immune responses in acute lung injury and pulmonary fibrosis in animal models, as well as in human patients. Due to these aspects, different groups raised the possibility that the stem cells from different sources, such as those found in bone marrow or adipose tissue, could act preventing the emphysematous lesion progression. In this paper, it is proposed a review of the current state of the art and future perspectives on the use of cell therapy in obstructive lung diseases.

Molecular and phylogenetic analysis of bovine coronavirus based on the spike glycoprotein gene

Bovine coronavirus has been associated with diarrhoea in newborn calves, winter dysentery in adult cattle and respiratory tract infections in calves and feedlot cattle. In Cuba, the presence of BCoV was first reported in 2006. Since then, sporadic outbreaks have continued to occur. This study was aimed at deepening the knowledge of the evolution, molecular markers of virulence and epidemiology of BCoV in Cuba. A total of 30 samples collected between 2009 and 2011 were used for PCR amplification and direct sequencing of partial or full S gene. Sequence comparison and phylogenetic studies were conducted using partial or complete S gene sequences as phylogenetic markers. All Cuban bovine coronavirus sequences were located in a single cluster supported by 100% bootstrap and 1.00 posterior probability values. The Cuban bovine coronavirus sequences were also clustered with the USA BCoV strains corresponding to the GenBank accession numbers EF424621 and EF424623, suggesting a common origin for these viruses. This phylogenetic cluster was also the only group of sequences in which no recombination events were detected. Of the 45 amino acid changes found in the Cuban strains, four were unique. (C) 2012 Elsevier B.V. All rights reserved.

SEASONALITY OF VIRAL RESPIRATORY INFECTIONS IN SOUTHEAST OF BRAZIL: THE INFLUENCE OF TEMPERATURE AND AIR HUMIDITY

Viruses are the major cause of lower respiratory tract infections in childhood and the main viruses involved are Human Respiratory Syncytial Virus (HRSV), Human Metapneumovirus (HMPV), Influenzavirus A and B (FLUA and FLUB), Human Parainfluenza Virus 1, 2 and 3 (HPIV1, 2 and 3) and Human Rhinovirus (HRV). The purposes of this study were to detect respiratory viruses in hospitalized children younger than six years and identify the influence of temperature and relative air humidity on the detected viruses. Samples of nasopharyngeal washes were collected from hospitalized children between May/2004 and September/2005. Methods of viral detection were RT-PCR, PCR and HRV amplicons were confirmed by hybridization. Results showed 54% (148/272) of viral positivity. HRSV was detected in 29% (79/272) of the samples; HRV in 23.1% (63/272); HPIV3 in 5.1% (14/272); HMPV in 3.3% (9/272); HPIV1 in 2.9% (8/272); FLUB in 1.4% (4/272), FLUA in 1.1% (3/272), and HPIV2 in 0.3% (1/272). The highest detection rates occurred mainly in the spring 2004 and in the autumn 2005. It was observed that viral respiratory infections tend to increase as the relative air humidity decreases, showing significant association with monthly averages of minimal temperature and minimal relative air humidity. In conclusion, viral respiratory infections vary according to temperature and relative air humidity and viral respiratory infections present major incidences it coldest and driest periods.

The Differential Clinical Impact of Human Coronavirus Species in Children With Cystic Fibrosis

We investigated the clinical impact of human coronaviruses (HCoV) OC43, 229E, HKU1 and NL63 in pediatric patients with cystic fibrosis (CF) during routine and exacerbation visits. A total of 408 nasopharyngeal aspirate samples were obtained from 103 patients over a 1-year period. Samples positive for HCoV were submitted for nucleotide sequencing to determine the species. Nineteen samples (4.65%) were positive for HCoV, of which 8 were positive for NL63, 6 for OC43, 4 for HKU1, and 1 for 229E. Identification of HCoV was not associated with an increased rate of respiratory exacerbations, but NL63-positive patients had higher exacerbation rates than patients who were positive for other HCoV species.