Fungos endofíticos em Eugenia brasiliensis: prospecção química, biológica, enzimática e avaliação do co-cultivo e epigenética em Xylaria cubensis, Diaporthe sp. e Colletotrichum sp.

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Prospecção de protótipos antifúngicos contra biofilmes de Histoplasma capsulatum e Paracoccidioides brasiliensis

A paracoccidioidomicose é uma doença de grande impacto social, sendo a sétima causa de morte entre as doenças crônicas infecciosas no Brasil, que responde por mais de 80% dos casos relatados mundialmente. A histoplasmose é uma micose endêmica em determinadas regiões das Américas, onde causa surtos frequentes. Sabe-se que os dois fungos dimórficos causadores destas doenças, Paracoccioides brasiliensis (Pb) e Histoplasma capsulatum (Hc), respectivamente, são capazes de formar biofilme, uma forma de organização que os torna muito mais perigosos, difíceis de serem combatidos e que é essencial para o desenvolvimento de infecção. Além disso não existem muitas opções terapêuticas antifúngicas que não sejam tóxicas com o uso prolongado disponíveis no mercado atualmente. Estes fatos, deixam claro a necessidade de pesquisar novas formas de combater esses microrganismos, com o intuito de desenvolver fármacos menos tóxicos e mais eficientes. Uma nova possibilidade de opções terapêuticas com novas substância antifúngica são as chalconas, que foi o objeto de estudo desta pesquisa. Foi estudada a ação antifúngica de diversas moléculas de chalconas contra as formas planctônica e de biofilme dos dois fungos em questão. As chalconas que apresentaram menor valor de CIM90 durante os ensaios com a forma planctônica foram selecionadas para o teste contra biofilme fúngico, estas chalconas foram T3, T24, T19, J4 e A20. Foi observado que estas substâncias possuem atividade antifúngica capaz de inibir 90% do crescimento fúngico do biofilme de Pb. Em relação ao biofilme de Hc, não obtivemos uma inibição de 90% com nenhuma molécula, a chalcona T3 foi a que apresentou a maior inibição atingindo 70%. Também foi estudado a citotoxicidade destas chalconas e algumas delas apresentaram bons valores de seletividade para o Pb, como a T3, T24, T19 e A20 porém, em relação ao Hc, apenas a T3 apresentou um valor de seletividade...

Oscilações climáticas Plio-Pleistocênicas e sua influência na prospecção de ouro na área do garimpo do Manelão (PA)

No garimpo do Manelão, o ouro está associado a veios de quartzo encaixados na seqüência metavulcano-sedimentar São Manoel. No período Plio-Pleistoceno, sob um clima úmido, desenvolveu-se sobre a seqüência São Manoel uma cobertura laterítica autóctone e imatura. Essa cobertura residual contém partículas de ouro com elevada pureza, sugerindo processos de lixiviação da liga Au-Ag ou de remobilização e redeposição do Au em ambiente laterítico. Durante o Pleistoceno, o clima tornou-se árido a semi-árido, favorecendo a erosão parcial da cobertura laterítica, através dos processos coluviais associados a enxurradas periódicas. Esse depósito coluvial recobre o perfíl laterítico, destruindo um possível padrão de dispersão geoquímica do ouro supergênico e prejudicando a prospecção geoquímica de superfície. No final do Pleistoceno e início do Holoceno, o clima úmido retorna, juntamente com os processos de intemperismo, formando stone line e latossolos. As coberturas laterítica e coluvial serviram de área-fonte para os aluviões atuais a subatuais do igarapé São Manoel, onde o ouro ocorre livre nos estratos sedimentares mais basais, formando concentrações da ordem de 10 g/ton.

Prospecção de protótipos antifúngicos contra biofilmes de Histoplasma capsulatum e Paracoccidioides brasiliensis

A paracoccidioidomicose é uma doença de grande impacto social, sendo a sétima causa de morte entre as doenças crônicas infecciosas no Brasil, que responde por mais de 80% dos casos relatados mundialmente. A histoplasmose é uma micose endêmica em determinadas regiões das Américas, onde causa surtos frequentes. Sabe-se que os dois fungos dimórficos causadores destas doenças, Paracoccioides brasiliensis (Pb) e Histoplasma capsulatum (Hc), respectivamente, são capazes de formar biofilme, uma forma de organização que os torna muito mais perigosos, difíceis de serem combatidos e que é essencial para o desenvolvimento de infecção. Além disso não existem muitas opções terapêuticas antifúngicas que não sejam tóxicas com o uso prolongado disponíveis no mercado atualmente. Estes fatos, deixam claro a necessidade de pesquisar novas formas de combater esses microrganismos, com o intuito de desenvolver fármacos menos tóxicos e mais eficientes. Uma nova possibilidade de opções terapêuticas com novas substância antifúngica são as chalconas, que foi o objeto de estudo desta pesquisa. Foi estudada a ação antifúngica de diversas moléculas de chalconas contra as formas planctônica e de biofilme dos dois fungos em questão. As chalconas que apresentaram menor valor de CIM90 durante os ensaios com a forma planctônica foram selecionadas para o teste contra biofilme fúngico, estas chalconas foram T3, T24, T19, J4 e A20. Foi observado que estas substâncias possuem atividade antifúngica capaz de inibir 90% do crescimento fúngico do biofilme de Pb. Em relação ao biofilme de Hc, não obtivemos uma inibição de 90% com nenhuma molécula, a chalcona T3 foi a que apresentou a maior inibição atingindo 70%. Também foi estudado a citotoxicidade destas chalconas e algumas delas apresentaram bons valores de seletividade para o Pb, como a T3, T24, T19 e A20 porém, em relação ao Hc, apenas a T3 apresentou um valor de seletividade...

Extensive clonal spread and extreme longevity in saw palmetto, a foundation clonal plant

The lack of effective tools have hampered our ability to assess the size, growth and ages of clonal plants. With Serenoa repens (saw palmetto) as a model, we introduce a novel analytical framework that integrates DNA fingerprinting and mathematical modelling to simulate growth and estimate ages of clonal plants. We also demonstrate the application of such life-history information of clonal plants to provide insight into management plans. Serenoa is an ecologically important foundation species in many Southeastern United States ecosystems; yet, many land managers consider Serenoa a troublesome invasive plant. Accordingly, management plans have been developed to reduce or eliminate Serenoa with little understanding of its life history. Using Amplified Fragment Length Polymorphisms, we genotyped 263 Serenoa and 134 Sabal etonia (a sympatric non-clonal palmetto) samples collected from a 20 X 20 m study plot in Florida scrub. Sabal samples were used to assign small field-unidentifiable palmettos to Serenoa or Sabal and also as a negative control for clone detection. We then mathematically modelled clonal networks to estimate genet ages. Our results suggest that Serenoa predominantly propagate via vegetative sprouts and 10000-year-old genets may be common, while showing no evidence of clone formation by Sabal. The results of this and our previous studies suggest that: (i) Serenoa has been part of scrub associations for thousands of years, (ii) Serenoa invasion are unlikely and (ii) once Serenoa is eliminated from local communities, its restoration will be difficult. Reevaluation of the current management tools and plans is an urgent task.

Extensive clonal spread and extreme longevity in saw palmetto, a foundation clonal plant

The lack of effective tools has hampered our ability to assess the size, growth and ages of clonal plants. With Serenoa repens (saw palmetto) as a model, we introduce a novel analytical frame work that integrates DNA fingerprinting and mathematical modelling to simulate growth and estimate ages of clonal plants. We also demonstrate the application of such life-history information of clonal plants to provide insight into management plans. Serenoa is an ecologically important foundation species in many Southeastern United States ecosystems; yet, many land managers consider Serenoa a troublesome invasive plant. Accordingly, management plans have been developed to reduce or eliminate Serenoa with little understanding of its life history. Using Amplified Fragment Length Polymorphisms, we genotyped 263 Serenoa and 134 Sabal etonia (a sympatric non-clonal palmetto) samples collected from a 20 x 20 m study plot in Florida scrub. Sabal samples were used to assign small field-unidentifiable palmettos to Serenoa or Sabal and also as a negative control for clone detection. We then mathematically modelled clonal networks to estimate genet ages. Our results suggest that Serenoa predominantly propagate via vegetative sprouts and 10000-year-old genets maybe common, while showing no evidence of clone formation by Sabal. The results of this and our previous studies suggest that: (i) Serenoa has been part of scrub associations for thousands of years, (ii) Serenoa invasions are unlikely and (ii) once Serenoa is eliminated from local communities, its restoration will be difficult. Reevaluation of the current management tools and plans is an urgent task.

The Spatial Signature of Biotic Interactions of a Clonal and a Non-clonal Palmetto in a Subtropical Plant Community

Spatial analyses of plant-distribution patterns can provide inferences about intra- and interspecific biotic interactions. Yet, such analyses are rare for clonal plants because effective tools (i.e., molecular markers) needed to map naturally occurring clonal individuals have only become available recently. Clonal plants are unique in that a single genotype has a potential to spatially place new individuals (i.e., ramets) in response to intra- and interspecific biotic interactions. Laboratory and greenhouse studies suggest that some clonal plants can avoid intra-genet, inter-genet, and inter-specific competition via rootplacement patterns. An intriguing and yet to be explored question is whether a spatial signature of such multi-level biotic interactions can be detected in natural plant communities. The facultatively clonal Serenoa repens and non-clonal Sabal etonia are ecologically similar and co-dominant palmettos that sympatrically occur in the Florida peninsula. We used amplified fragment length polymorphisms (AFLPs) to identify Serenoa genets and also to assign field-unidentifiable small individuals as Sabal seedlings, Serenoa seedlings, or Serenoa vegetative sprouts. Then, we conducted univariate and bivariate multi-distance spatial analyses to examine the spatial interactions of Serenoa (n=271) and Sabal (n=137) within a 20x20 m grid at three levels, intragenet, intergenet and interspecific. We found that spatial interactions were not random at all three levels of biotic interactions. Serenoa genets appear to spatially avoid self-competition as well as intergenet competition. Furthermore, Serenoa and Sabal were spatially negatively associated with each other. However, this negative association pattern was also evident in a spatial comparison between non-clonal Serenoa and Sabal, suggesting that Serenoa genets’ spatial avoidance of Sabal through placement of new ramets is not the explanation of the interspecific-level negative spatial pattern. Our results emphasize the importance of investigating spatial signatures of biotic as well as abiotic interactions at multiple levels in understanding spatial distribution patterns of clonal plants in natural plant communities.

Clonal spread of methicillin-resistant Staphylococcus pseudintermedius in Europe and North America: an international multicentre study

OBJECTIVES: The aim of this study was to determine the phenotypic and genotypic resistance profiles of methicillin-resistant Staphylococcus pseudintermedius (MRSP) and to examine the clonal distribution in Europe and North America. METHODS: A total of 103 MRSP isolates from dogs isolated from several countries in Europe, the USA and Canada were characterized. Isolates were identified by PCR-restriction fragment length polymorphism (RFLP), antimicrobial susceptibility was determined by broth dilution or gradient diffusion, and antimicrobial resistance genes were detected using a microarray. Genetic diversity was assessed by multilocus sequence typing (MLST), PFGE and spa typing. Staphylococcal cassette chromosome mec (SCCmec) elements were characterized by multiplex PCR. RESULTS: Thirteen different sequence types (STs), 18 PFGE types and 8 spa types were detected. The hybrid SCCmec element II-III described in a MRSP isolate was present in 75 (72.8%) isolates. The remaining isolates either had SCCmec type III (n=2), IV (n=6), V (n=14) or VII-241 (n=4) or were non-typeable (n=2). The most common genotypes were ST71(MLST)-J(PFGE)-t02(spa)-II-III(SCCmec) (56.3%) and ST68-C-t06-V (12.6%). In addition to mecA-mediated beta-lactam resistance, isolates showed resistance to trimethoprim [dfr(G)] (90.3%), gentamicin/kanamycin [aac(6')-Ie-aph(2')-Ia] (88.3%), kanamycin [aph(3')-III] (90.3%), streptomycin [ant(6')-Ia] (90.3%), streptothricin (sat4) (90.3%), macrolides and/or lincosamides [erm(B), lnu(A)] (89.3%), fluoroquinolones (87.4%), tetracycline [tet(M) and/or tet(K)] (69.9%), chloramphenicol (cat(pC221)) (57.3%) and rifampicin (1.9%). CONCLUSIONS: Two major clonal MRSP lineages have disseminated in Europe (ST71-J-t02-II-III) and North America (ST68-C-t06-V). Regardless of their geographical or clonal origin, the isolates displayed resistance to the major classes of antibiotics used in veterinary medicine and thus infections caused by MRSP isolates represent a serious therapeutic challenge.

Clonal analysis of Inquilinus limosus isolates from six cystic fibrosis patients and specific serum antibody response

Inquilinus limosus is a novel Gram-negative bacterium of the subdivision alpha-Proteobacteria recently found in the airways of patients with cystic fibrosis (CF). Here, the authors report on the clinical courses of six CF patients colonized with I. limosus. Five patients suffered from either an acute respiratory exacerbation or a progressive loss of pulmonary function, whereas one patient was in a stable clinical situation. This study focused on two aims: (i) the clonal analysis of I. limosus isolates by random amplified polymorphic DNA (RAPD)-PCR, and (ii) the clarification of whether the presence of I. limosus in the respiratory tract is associated with a specific serum antibody response. Serum IgG was detected by immunoblotting using I. limosus whole-cell-lysate proteins as antigens. Sera from healthy blood donors (n=10) and from CF patients colonized with Pseudomonas aeruginosa (n=10) were found to be immunoblot negative. All six Inquilinus-positive patients raised serum IgG antibodies against various I. limosus antigens. Surprisingly, in one patient, a specific I. limosus serum antibody response was already detected 1 year prior to Inquilinus-positive sputum cultures. Two prominent antigens were characterized by MALDI-MS: a 23 kDa protein revealed homology to the outer membrane lipoprotein OmlA of Actinobacillus pleuropneumoniae, and an 18 kDa protein to a protein-tyrosine phosphatase of Burkholderia cepacia. In conclusion, detection of I. limosus is accompanied by a specific serum antibody response and may reflect the infectious/pathogenic potential of I. limosus. Moreover, IgG immunoblotting may be useful to detect early infection with I. limosus and may support the selective cultivation of this novel emerging pathogen.

Outbreak among drug users caused by a clonal strain of group A streptococcus

We describe an outbreak among drug users of severe soft-tissue infections caused by a clonal strain of group A streptococcus of M-type 25. Cases (n = 19) in drug users were defined as infections (mainly needle abscesses) due to the outbreak strain. Comparison with controls showed that infected drug users bought drugs more often at a specific place. Drug purchase and use habits may have contributed to this outbreak.