Data compilation on the biological response to ocean acidification: environmental and experimental context of data sets and related literature

The exponential growth of studies on the biological response to ocean acidification over the last few decades has generated a large amount of data. To facilitate data comparison, a data compilation hosted at the data publisher PANGAEA was initiated in 2008 and is updated on a regular basis (doi:10.1594/PANGAEA.149999). By January 2015, a total of 581 data sets (over 4 000 000 data points) from 539 papers had been archived. Here we present the developments of this data compilation five years since its first description by Nisumaa et al. (2010). Most of study sites from which data archived are still in the Northern Hemisphere and the number of archived data from studies from the Southern Hemisphere and polar oceans are still relatively low. Data from 60 studies that investigated the response of a mix of organisms or natural communities were all added after 2010, indicating a welcomed shift from the study of individual organisms to communities and ecosystems. The initial imbalance of considerably more data archived on calcification and primary production than on other processes has improved. There is also a clear tendency towards more data archived from multifactorial studies after 2010. For easier and more effective access to ocean acidification data, the ocean acidification community is strongly encouraged to contribute to the data archiving effort, and help develop standard vocabularies describing the variables and define best practices for archiving ocean acidification data.

Moluscos Holoplanctónicos (Mollusca: Heteropoda y Thecosomata) como indicadores de la variabilidad oceanográfica y del evento El Niño frente a Callao y Pisco, del 2013 al 2015.

Cambio Climático viene ejecutando el proyecto Estudio integrado del afloramiento costero frente a Perú, que abarca diferentes componentes y áreas de investigación con el fin de comprender el sistema de afloramiento costero, desde la interacción océano-atmósfera hasta el acoplamiento bento-pelágico, tanto en sus propiedades oceanográficas, su productividad, la relación con la Zona de Mínima de Oxígeno (ZMO) como en las comunidades asociadas que habitan la columna de agua y el sedimento a diferentes escalas de tiempo. En el caso del zooplancton, se estudia su variabilidad temporal y costa-océano en la composición y abundancia, con relación a la dinámica del afloramiento costero y la variabilidad oceanográfica asociada a El Niño. Dentro del zooplancton, el grupo de los moluscos holoplanctónicos conformados principalmente por los órdenes Heteropoda y Thecosomata son de particular interés, ya que son considerados buenos indicadores biológicos de masas de agua Cruz (1993). Este grupo presenta una amplia distribución oceánica en zonas tropicales y subtropicales y actualmente son tema de estudio de la comunidad científica internacional relacionado con el cambio climático, específicamente con la acidificación de los océanos, debido a sus características calcificantes. Este trabajo da a conocer la composición y abundancia de las especies de moluscos holoplanctónicos y su relación con las variables oceanográficas y eventos El Niño durante tres años 2013, 2014 y 2015 en el mar peruano frente a Callao y Pisco, entre 2 y 50 millas náuticas de la costa.

Distribución y abundancia de Opistobranchios (Mollusca) en el área natural protegida complejo Los Cóbanos, Sonsonate, El Salvador

Se estudió la distribución y abundancia de la fauna opistobranchia en cuatro estaciones de monitoreo ubicadas en cuatro playas que forman parte del Área Natural Protegida Complejo Los Cóbanos, siendo estas: playa Los Cóbanos, playa El Faro, playa La Privada y playa de Decameron (Salinitas); en el municipio de Acajutla, departamento de Sonsonate, El Salvador; durante los meses de diciembre de 2014, a abril de 2015. Se utilizó la metodología de transectos lineales de 300m perpendiculares a la costa, en la zona intermareal y cuadrantes de 10m2 aplicando conteos visuales con buceo libre. Se contabilizaron un total de 9 especies, pertenecientes a los órdenes anaspidea, sacoglossa, nudibranchia, cephalaspidea; con un total de 2728 individuos, de estos la especie más abundante fue Elysia diomedea, con 1417 individuos; seguida de Stilocheilus striatus con 1171 individuos. La playa con mayor riqueza de especies fue El Faro y con menor Los Cóbanos; se presentó una mayor abundancia en el mes de abril, y menor abundancia en el mes de febrero. Respecto a la distribución, el mayor número de individuos de Elysia diomedea fueron encontrados a los 200m, Estilocheilus striatus hasta los 200m presenta mayor número de individuos y Dolabrifera dolabrifera presenta mayor número de individuos hasta los 100m, siendo su amplitud de distribución corta; el resto de especies no se puede concluir que presenten una afinidad específica hacia una distancia particular. La similitud entre las especies encontradas fue variada: en el caso de Glossodorys sedna, presentó una similitud del 0% respeto al resto de especies, la mayor similitud corresponde a Elysia diomedea y Stilocheilus striatus, con el 41% de similitud. Respecto a la diversidad, la playa que presentó un mayor valor de diversidad fue La Privada, siendo la menos diversa Decameron. Los datos obtenidos en la presente investigación pueden ser empleados en la planificación de actividades de conservación y manejo sostenible del ecosistema.

Lysossomal membrane stability of the brown mussel Perna perna (Linnaeus) (Mollusca, Bivalvia) exposed to the anionic surfactant Linear Alkylbenzene Sulphonate (LAS).

The effects of the Linear Alkylbenzene Sulphonate (LAS) were evaluated on the mussel Perna perna (Linnaeus, 1758), using a cellular level biomarker. The Neutral Red Retention Time (NRRT) assay was used to estimate effects at cellular levels. Significant effects were observed for the NRRT assay, even in low concentrations. The effects at cellular level were progressive, suggesting that the organisms are not capable to recover of such increasing effects. Additionally, the results show that the levels of LAS observed for Brazilian coastal waters may chronically affect the biota.

Faecal bacteria in Perna perna (Linnaeus, 1758) (Mollusca: Bivalvia) for biomonitoring coastal waters and seafood quality

O desenvolvimento urbano em áreas costeiras é intenso e o aumento das descargas de esgoto é uma das conseqüências. Assim, leis específicas que regulem limites para a contaminação microbiológica das águas e de alimentos de origem marinha são necessárias. O objetivo deste estudo é avaliar a utilização de Enterococos e coliformes termotolerantes na carne de mexilhões Perna perna como alternativa para o monitoramento da qualidade microbiológica de águas costeiras. O estudo também considera relações alométricas aplicadas às taxas de clearance para entender a concentração de bactérias pelo molusco. As densidades bacterianas obtidas no molusco foram de 50 a 4300 vezes maiores do que nas amostras de água coletadas próximas dos moluscos e alguns foram considerados impróprios para consumo, mesmo quando as águas não mostraram restrições. A taxa de clearance média obtida para retenção de Enterococos foi 317.7 ml h-1 e essas taxas (CR) puderam ser relacionadas com o tamanho dos mexilhões (L) pela equação CR = 28.3229L1.6421. Os resultados mostram que as densidades bacterianas nos tecidos dos mexilhões podem refletir a contaminação crônica do ambiente e que as taxas de clearance devem ser consideradas para a tomada de decisão em situações onde, por exemplo, se deseja implantar mexilhões para cultivo.

Physiological responses of the brown mussel Perna perna (Mollusca, Bivalvia) exposed to the anionic surfactant linear alkylbenzene sulphonate (LAS).

The effects of the Linear Alkylbenzene Sulphonate (LAS) were evaluated on the mussel Perna perna, using physiological and genotoxic biomarkers. The Micronuclei (MN) assay was used to estimate effects at nuclear level, whereas the physiological effects were evaluated by measuring the oxygen consumption and ammonia excretion rates. Significant effects were observed for the MN assay and the ammonia excretion rate, even in low concentrations. The oxygen consumption was not affected in the tested concentrations. For MN and ammonia excretion, the animals exposed to intermediate concentrations were not affected, but responded to the higher concentrations, indicating the existence of compensatory mechanisms at physiological level. However, parallel to this study other authors indicate the presence of progressive effects at the cellular level, suggesting that the organisms are not capable to recover of such increasing effects. Additionally, the results show that the levels of LAS observed for Brazilian coastal waters may chronically affect the biota.

Limnoperna fortunei (Dunker, 1857) (Mollusca, Bivalvia, Mytilidae): first record in the São Francisco River basin, Brazil.

Limnoperna fortunei (Dunker, 1857) is a small mytilid native to Southeast Asia. It was introduced in South America in early 1990 and has dispersed from Argentina to central Brazil, and until 2014 has been restricted mainly to the Paraná and Uruguay river basins. The present note reports the occurrence of Limnoperna fortunei for the first time in the São Francisco River basin in northeastern Brazil. The establishment of L. fortunei in these regions will require close attention from the government and also by society.

First record of Ocinebrina nicolai (Mollusca: Gastropoda: Muricidae: Ocenebrinae) in North-Eastern Atlantic waters

Ocinebrina nicolai Monterosato, 1884 a marine mollusc belonging to the Muricidae family is reported from Algarve, south coast of Portugal for the first time and is a new record for the biodiversity of the Portuguese malacological fauna and northeastern Atlantic waters. This species with a medium-size shell for the genus (14–16 mm) was initially sampled during a baseline project that studied marine biotopes in the central Algarve region. This short note presents a brief diagnosis of the species, provides local information on geographical distribution, habitat, and compares it with other congeneric species found in Portugal: Ocinebrina aciculata (Lamarck, 1822) and Ocinebrina edwardsii (Payraudeau, 1826).

First record of Anachis aliceae (Mollusca: Gastropoda: Columbellidae) in the Algarve, south coast of Portugal

The marine gastropod Anachis aliceae (Pallary, 1900) is reported with certainty for the first time from the Algarve, south coast of Portugal from species-rich rocky priority biotope. Several live specimens of this species belonging to the Columbellidae family were collected and identified from by-catch samples, recovered from octopus traps set at depths between 50 and 70 m off Ponta da Piedade. Taxonomic validation of the newly recorded species is based on the comparison to other related species within the genus.

Comparative analysis and distribution of Omega-3 lcPUFA Biosynthesis genes in marine molluscs

Recent research has identified marine molluscs as an excellent source of omega-3 long-chain polyunsaturated fatty acids (lcPUFAs), based on their potential for endogenous synthesis of lcPUFAs. In this study we generated a representative list of fatty acyl desaturase (Fad) and elongation of very long-chain fatty acid (Elovl) genes from major orders of Phylum Mollusca, through the interrogation of transcriptome and genome sequences, and various publicly available databases. We have identified novel and uncharacterised Fad and Elovl sequences in the following species: Anadara trapezia, Nerita albicilla, Nerita melanotragus, Crassostrea gigas, Lottia gigantea, Aplysia californica, Loligo pealeii and Chlamys farreri. Based on alignments of translated protein sequences of Fad and Elovl genes, the haeme binding motif and histidine boxes of Fad proteins, and the histidine box and seventeen important amino acids in Elovl proteins, were highly conserved. Phylogenetic analysis of aligned reference sequences was used to reconstruct the evolutionary relationships for Fad and Elovl genes separately. Multiple, well resolved clades for both the Fad and Elovl sequences were observed, suggesting that repeated rounds of gene duplication best explain the distribution of Fad and Elovl proteins across the major orders of molluscs. For Elovl sequences, one clade contained the functionally characterised Elovl5 proteins, while another clade contained proteins hypothesised to have Elovl4 function. Additional well resolved clades consisted only of uncharacterised Elovl sequences. One clade from the Fad phylogeny contained only uncharacterised proteins, while the other clade contained functionally characterised delta-5 desaturase proteins. The discovery of an uncharacterised Fad clade is particularly interesting as these divergent proteins may have novel functions. Overall, this paper presents a number of novel Fad and Elovl genes suggesting that many mollusc groups possess most of the required enzymes for the synthesis of lcPUFAs.