(Table 1) Detrital modes for sand grains in sediment core CRP-3

Detrital modes determined on 68 sandstone samples from CRP-3 drillcore indicate a continuation of the dynamic history of uplift-related erosion and unroofing previously documented in CRP-1 and CRP-2/2A. The source area is identified very strongly with the Transantarctic Mountains (TAM) Dry Valleys block in southern Victoria Land. Initial unroofing of the TAM comprised removal of much of a former capping sequence of Jurassic Kirkpatrick basalts, which preceded the formation of the Victoria Land Basin. Erosion of Beacon Supergroup outcrops took place during progressive uplift of the TAM in the Oligocene. Earliest CRP-3 Oligocene samples above 788 metres below the sea floor (mbsf) were sourced overwhelmingly in Beacon Supergroup strata, including a recognisable contribution from Triassic volcanogenic Lashly Formation sandstones (uppermost Victoria Group). Moving up-section, by 500 mbsf, the CRP-3 samples are depauperate quartz arenites dominantly derived from the quartzose Devonian Taylor Group. Between c. 500 and 450 mbsf, the modal parameters show a distinctive change indicating that small outcrops of basement granitoids and metamorphic rocks were also being eroded along with the remaining Beacon (mainly Taylor Group) sequence. Apart from enigmatic fluctuations in modal indices above 450 mbsf, similar to those displayed by samples in CRP-2/2A, the CRP-3 modes are essentially constant (within a broad data scatter) to the top of CRP-3. The proportion of exposed basement outcrop remained at < 20 %, indicating negligible uplift (i.e. relative stability) throughout that period.

Physical properties of sediment core CRP-1

The relationship between whole-core compressional wave velocities and gamma-ray attenuation porosities of sediments cored at CRP-1 is examined and compared with results from core-plug samples and global models. Both core-plug and whole-core velocities show a strong dependence on porosity: this relationship appears to be independent of lithology. In the range from 0.1 to 0.4 of fractional porosity (Miocene strata), plug velocities are generally 0.2 - 0.5 km s-1 higher than whole-core velocities. Possible reasons include decreased rigidity in the whole core and diagenetic changes in the plugs. Possibly both velocity measurements are correct but neither is fully representative for in situ conditions. It appears that the core-plug results are more compatible with data from other regions than the whole-core data. After removing first-order compaction control from the whole-core porosity record, a second-order control by clay content can be quantified as a simple positive linear regression (R=0.6). In contrast, after correction for first-order control, porosity and velocity are not significantly influenced by lonestone abundance except for rare, very large lonestones.

Peptide binding prediction for the human class II MHC allele HLA-DP2:a molecular docking approach

MHC class II proteins bind oligopeptide fragments derived from proteolysis of pathogen antigens, presenting them at the cell surface for recognition by CD4+ T cells. Human MHC class II alleles are grouped into three loci: HLA-DP, HLA-DQ and HLA-DR. In contrast to HLA-DR and HLA-DQ, HLA-DP proteins have not been studied extensively, as they have been viewed as less important in immune responses than DRs and DQs. However, it is now known that HLA-DP alleles are associated with many autoimmune diseases. Quite recently, the X-ray structure of the HLA-DP2 molecule (DPA*0103, DPB1*0201) in complex with a self-peptide derived from the HLA-DR a-chain has been determined. In the present study, we applied a validated molecular docking protocol to a library of 247 modelled peptide-DP2 complexes, seeking to assess the contribution made by each of the 20 naturally occurred amino acids at each of the nine binding core peptide positions and the four flanking residues (two on both sides).

Element abundances, loss on ignition, total analyzed abundances, CIA values, and Al-oxide/Ti-oxide ratios of sediment core CRP-2A (Table1)

The CRP-2/2A core, drilled in western McMurdo Sound in October and November 1998, penetrated 624 m of Quaternary. Pliocene, lower Miocene, and Oligocene glacigenic sediments. The palaeoclimatic record of CRP-2/2A is examined using major element analyses of bulk core samples of fine grained sediments (mudstones and siltstones) and the Chemical Index of Alteration (CIA) of Nesbitt & Young (1982). The CIA is calculated from the relative abundances of AI, K, Ca, and Na oxides, and its magnitude increases as the effects of chemical weathering increase. However, changes in sediment provenance can also affect the CIA, and provenance changes are recorded by shifts in the Al2O3/TiO2 ratios and the Nb contents of these CRP-2/2A mudstones. Relatively low CIA values (40-50) occur throughout the CRP-2/2A sequence, whereas the Al2O3/TiO2 ratio decreases upsection. The major provenance change is an abrupt onset of McMurdo Volcanic Group detritus at ~300 mbsf and is best characterized by a rapid increase in Nb content in the sediments. This provenance shift is not evident in the CIA record, suggesting that a contribution from the Ferrar Dolerite to the older sediments was replaced by an input of McMurdo Volcanic Group material in the younger sediments. If this is true, then the relatively uniform CIA values indicate relatively consistent palaeoweathering intensities throughout the Oligocene and early Miocene in the areas that supplied sediment to CRP-2/2A.

Analytical results of 19 amino acid analyses from Unit 3.1 of sediment core CRP-1 (Table 1)

Amino acid-based geochronological analyses were carried out on fossil mollusc shell and foraminifera from Unit 3.1, Cape Roberts Project core CRP-1. Ratios of D-alloIsoleucine to L-Isoleucine (D/L) were measured from 19 fossil samples using cation exchange High Performance Liquid Chromatography (HPLC) methods. Preliminary interpretation of these results suggest that Unit 3.1 contains carbonate fossils having multiple ages. The interpreted ages have a bimodal distribution between ~220 Ka (Quaternary) and ~2.4 Ma (Pliocene). However, these results lack a comprehensive regional and taxonomic context for amino acid studies in Antarctica and therefore should be regarded as preliminary age estimates of fossil shell ages.

Summary of 40Ar/39Ar results from sediment core CRP-2A (Table 1)

40Ar/39Ar analyses of tephra and clasts of volcanic rock provide age constraints for upper parts of the CRP-2A core. Single-crystal laser-fusion analyses of anorthoclase phenocrysts from three tephra-bearing layers yielded the most precise age constraints for CRP-2A. The dated tephra layers are: 1) a 2.7-m-thick interval of pumice and ash layers between 111.5 and 114.2 meters below sea floor (mbsf) (weighted mean age = 21.44 ± 0.05 Ma, +2.2); 2) a concentration of pumice near 193.4 mbsf (23.98 ± 0.13 Ma): and 3) a concentration of pumice near 280 mbsf (24,22 ± 0.03 Ma) (all ages are calibrated relative to Fish Canyon Tuff sanidine at 27.84 Ma). The 111 to 114 mbsf tephra is almost entirely non-reworked, and the 193 mbsf and 280 mbsf tephra concentrations are interpreted as being reworked and redeposited soon after eruption. All three of the tephra ages are therefore considered to be equivalent to depositional ages. The variation in precision of these three age determinations is largely a function of phenocryst size and abundance. The accuracy of these ages is equal to the accuracy of the current calibration of the 40Ar/39Ar methode (about ± 1 %). 40Ar/39Ar results from volcanic clasts provide three additional maximum age constraints for the CRP-2A core. Single-crystal laser-fusion of sanidine phenocrysts from a rhyolitic clast from 294 mbsf yielded a precise maximum depositional age of 24.98 ± 0.08 Ma, and plateau ages of groundmass concentrates from basaltic clasts near 36.02 mbsf and 125.92 mbsf yielded maximum depositional ages of 19.18 ± 0.12 Ma, and 22.56 ± 0.14 Ma, respectively. The 40Ar/39Ar data, in association with biostratigraphic, paleomagnetic, and isotopic age constraints for CRP-2A, confirm interpretation for rapid sedimentation rates in the 36 to 280 mbsf interval, particularly in the 193 to 280 mbsf interval where they support interpretations for sedimentation cycles spanning 100 k.y. intervals. In addition to the 19 to 25 Ma ages measured from thephra layers and clasts, provenance-related ages ranging from 150 to 450 Ma were determined from clasts and individual detrital or xenocrystic crystals from CRP-2A.

Metabolic syndrome features small, apolipoprotein A-I-poor, triglyceride-rich HDL3 particles with defective anti-apoptotic activity

The metabolic syndrome (MetS) phenotype is typically characterized by visceral obesity, insulin resistance, atherogenic dyslipidemia involving hypertriglyceridemia and subnormal levels of high density lipoprotein-cholesterol (HDL-C), oxidative stress and elevated cardiovascular risk. The potent antioxidative activity of small HDL3 is defective in MetS [Hansel B, et al. J Clin Endocrinol Metab 2004;89:4963-71]. We evaluated the functional capacity of small HDL3 particles from MetS subjects to protect endothelial cells from apoptosis induced by mildly oxidized low-density lipoprotein (oxLDL). MetS subjects presented an insulin-resistant obese phenotype, with hypertriglyceridemia, elevated apolipoprotein B and insulin levels, but subnormal HDL-C concentrations and chronic low grade inflammation (threefold elevation of C-reactive protein). When human microvascular endothelial cells (HMEC-1) were incubated with oxLDL (200 jig apolipoprotein B/ml) in the presence or absence of control HDL subfiractions (25 mu g protein/ml), small, dense HDL3b and 3c significantly inhibited cellular annexin V binding and intracellular generation of reactive oxygen species. The potent anti-apoptotic activity of small HDL3c particles was reduced (-35%; p < 0.05) in MetS subjects (n = 16) relative to normolipidemic controls (n = 7). The attenuated anti-apoptotic activity of HDL3c correlated with abdominal obesity, atherogenic dyslipidemia and systemic oxidative stress (p < 0.05), and was intimately associated with altered physicochemical properties of apolipoprotein A-I (apoA-I-poor HDL3c, involving core cholesteryl ester depletion and triglyceride enrichment. We conclude that in MetS, apoA-I-poor, small, dense HDL3c exert defective protection of endothelial cells from oxLDL-induced apoptosis, potentially reflecting functional anomalies intimately associated with abnormal neutral lipid core content. (c) 2007 Elsevier Ireland Ltd. All rights reserved.

Scalable Unified Transform Architecture for Advanced Video Coding Embedded Systems

A novel high throughput and scalable unified architecture for the computation of the transform operations in video codecs for advanced standards is presented in this paper. This structure can be used as a hardware accelerator in modern embedded systems to efficiently compute all the two-dimensional 4 x 4 and 2 x 2 transforms of the H.264/AVC standard. Moreover, its highly flexible design and hardware efficiency allows it to be easily scaled in terms of performance and hardware cost to meet the specific requirements of any given video coding application. Experimental results obtained using a Xilinx Virtex-5 FPGA demonstrated the superior performance and hardware efficiency levels provided by the proposed structure, which presents a throughput per unit of area relatively higher than other similar recently published designs targeting the H.264/AVC standard. Such results also showed that, when integrated in a multi-core embedded system, this architecture provides speedup factors of about 120x concerning pure software implementations of the transform algorithms, therefore allowing the computation, in real-time, of all the above mentioned transforms for Ultra High Definition Video (UHDV) sequences (4,320 x 7,680 @ 30 fps).

High Performance Multi-Standard Architecture for DCT Computation in H.264/AVC High Profile and HEVC Codecs

A new high performance architecture for the computation of all the DCT operations adopted in the H.264/AVC and HEVC standards is proposed in this paper. Contrasting to other dedicated transform cores, the presented multi-standard transform architecture is supported on a completely configurable, scalable and unified structure, that is able to compute not only the forward and the inverse 8×8 and 4×4 integer DCTs and the 4×4 and 2×2 Hadamard transforms defined in the H.264/AVC standard, but also the 4×4, 8×8, 16×16 and 32×32 integer transforms adopted in HEVC. Experimental results obtained using a Xilinx Virtex-7 FPGA demonstrated the superior performance and hardware efficiency levels provided by the proposed structure, which outperforms its more prominent related designs by at least 1.8 times. When integrated in a multi-core embedded system, this architecture allows the computation, in real-time, of all the transforms mentioned above for resolutions as high as the 8k Ultra High Definition Television (UHDTV) (7680×4320 @ 30fps).

Tauroursodeoxycholic acid prevents Bax-induced membrane perturbation and cytochrome C release in isolated mitochondria

Biochemistry, 2003, 42 (10), pp 3070–3080 DOI: 10.1021/bi026979d

Density-based hierarchical clustering of pyro-sequences on a large scale--the case of fungal ITS1.

MOTIVATION: Analysis of millions of pyro-sequences is currently playing a crucial role in the advance of environmental microbiology. Taxonomy-independent, i.e. unsupervised, clustering of these sequences is essential for the definition of Operational Taxonomic Units. For this application, reproducibility and robustness should be the most sought after qualities, but have thus far largely been overlooked. RESULTS: More than 1 million hyper-variable internal transcribed spacer 1 (ITS1) sequences of fungal origin have been analyzed. The ITS1 sequences were first properly extracted from 454 reads using generalized profiles. Then, otupipe, cd-hit-454, ESPRIT-Tree and DBC454, a new algorithm presented here, were used to analyze the sequences. A numerical assay was developed to measure the reproducibility and robustness of these algorithms. DBC454 was the most robust, closely followed by ESPRIT-Tree. DBC454 features density-based hierarchical clustering, which complements the other methods by providing insights into the structure of the data. AVAILABILITY: An executable is freely available for non-commercial users at ftp://ftp.vital-it.ch/tools/dbc454. It is designed to run under MPI on a cluster of 64-bit Linux machines running Red Hat 4.x, or on a multi-core OSX system. CONTACT: dbc454@vital-it.ch or nicolas.guex@isb-sib.ch.

Magnetoencephalography demonstrates multiple asynchronous generators during human sleep spindles.

Sleep spindles are approximately 1 s bursts of 10-16 Hz activity that occur during stage 2 sleep. Spindles are highly synchronous across the cortex and thalamus in animals, and across the scalp in humans, implying correspondingly widespread and synchronized cortical generators. However, prior studies have noted occasional dissociations of the magnetoencephalogram (MEG) from the EEG during spindles, although detailed studies of this phenomenon have been lacking. We systematically compared high-density MEG and EEG recordings during naturally occurring spindles in healthy humans. As expected, EEG was highly coherent across the scalp, with consistent topography across spindles. In contrast, the simultaneously recorded MEG was not synchronous, but varied strongly in amplitude and phase across locations and spindles. Overall, average coherence between pairs of EEG sensors was approximately 0.7, whereas MEG coherence was approximately 0.3 during spindles. Whereas 2 principle components explained approximately 50% of EEG spindle variance, >15 were required for MEG. Each PCA component for MEG typically involved several widely distributed locations, which were relatively coherent with each other. These results show that, in contrast to current models based on animal experiments, multiple asynchronous neural generators are active during normal human sleep spindles and are visible to MEG. It is possible that these multiple sources may overlap sufficiently in different EEG sensors to appear synchronous. Alternatively, EEG recordings may reflect diffusely distributed synchronous generators that are less visible to MEG. An intriguing possibility is that MEG preferentially records from the focal core thalamocortical system during spindles, and EEG from the distributed matrix system.

Effect of Noncondensable Gases on Circulation of Primary Coolant in Nuclear Power Plants in Abnormal Situations

The present study focuses on two effects of the presence of a noncondensable gas on the thermal-hydraulic behavior of thecoolant of the primary circuit of a nuclear reactor in the VVER-440 geometry inabnormal situations. First, steam condensation with the presence of air was studied in the horizontal tubes of the steam generator (SG) of the PACTEL test facility. The French thermal-hydraulic CATHARE code was used to study the heat transfer between the primary and secondary side in conditions derived from preliminary experiments performed by VTT using PACTEL. In natural circulation and single-phase vapor conditions, the injection of a volume of air, equivalent to the totalvolume of the primary side of the SG at the entrance of the hot collector, did not stop the heat transfer from the primary to the secondary side. The calculated results indicate that air is located in the second half-length (from the mid-length of the tubes to the cold collector) in all the tubes of the steam generator The hot collector remained full of steam during the transient. Secondly, the potential release of the nitrogen gas dissolved in the water of the accumulators of the emergency core coolant system of the Loviisa nuclear power plant (NPP) was investigated. The author implemented a model of the dissolution and release ofnitrogen gas in the CATHARE code; the model created by the CATHARE developers. In collaboration with VTT, an analytical experiment was performed with some components of PACTEL to determine, in particular, the value of the release time constant of the nitrogen gas in the depressurization conditions representative of the small and intermediate break transients postulated for the Loviisa NPP. Such transients, with simplified operating procedures, were calculated using the modified CATHARE code for various values of the release time constant used in the dissolution and release model. For the small breaks, nitrogen gas is trapped in thecollectors of the SGs in rather large proportions. There, the levels oscillate until the actuation of the low-pressure injection pumps (LPIS) that refill the primary circuit. In the case of the intermediate breaks, most of the nitrogen gas is expelled at the break and almost no nitrogen gas is trapped in the SGs. In comparison with the cases calculated without taking into account the release of nitrogen gas, the start of the LPIS is delayed by between 1 and 1.75 h. Applicability of the obtained results to the real safety conditions must take into accountthe real operating procedures used in the nuclear power plant.

Ydinvoimalaitoksen varalla olevien turvallisuusjärjestelmien määräaikaistestausten riittävyys ja kattavuus

Ydinvoimalaitoksen varalla olevien turvallisuusjärjestelmien tehtävänä on ehkäistä häiriö- ja onnettomuustilanteiden syntyminen sekä lieventää mahdollisen onnettomuuden seurauksia. Jotta saadaan tietoa näiden tärkeiden järjestelmien käyttökunnosta, on suoritettava riittäviä ja kattavia määräaikaistestauksia. Tutkimuksen pääkohteena ovat Olkiluodon voimalaitoksen matala- ja korkeapaineisten hätäjäähdytysjärjestelmien määräaikaistestaukset ja niiden ohjeet. Määräaikaistestauksista arvioidaan niiden kykyä havainnoida vikoja, mahdollisia vikaantumisia testauksissa, testausten taajuutta sekä vastaavuutta järjestelmien suunnitteluperusteena olevaan jäähdytteenmenetysonnettomuuteen (LOCA). Lisäksi selvitetään, mitä hyötyä testausten hajautuksilla ja diversifioinnilla on saavutettu, ja miten niitä tulisi jatkossa soveltaa. Testauksiin liittyviä ohjeita ja menettelyjä arvioidaan tarkastelemalla, täyttävätkö ne viranomaisen asettamat vaatimukset. Tulokseksi syntyi arvio järjestelmien testausten nykytilasta, joka on yleisesti ottaen hyvä. Tähän ovat vaikuttaneet testauksissa esiintyneiden puutteiden korjaaminen ja määräaikaistestausten määräajoin tapahtuvan arvioinnin kehittäminen. Vertailut LO-CA:an tuottivat tyydyttävän tuloksen, koska testausten todettiin olevan riittävän laajat ja vastaavan vuodessa kertyvien rasitusten osalta noin vuorokauden aikaista onnettomuutta lähes kaikilla laitteilla. Suositeltavaa olisi suorittaa pitkäaikaisempaa testausta apusyöttövesijärjestelmän pumpulle. Optimitestausvälin mukaisesti testausvälit ovat tällä hetkellä riittävän tiheät, ja muutamia testauksia pitäisi jopa harventaa. Hajautuksilla on saavutettu huomattava riskin väheneminen, ja nykyisin hajautusta sovelletaan hätäjäähdytysjärjestelmissä laajasti. Joistakin mittalaitteiden testauksista hajautus vielä puuttuu, joten näihin se olisi suositeltavaa lisätä. Järjestelmien testausten diversifiointi on nykyisellään riittävää.