Genomic evolution during a 10,000-generation experiment with bacteria

Molecular methods are used widely to measure genetic diversity within populations and determine relationships among species. However, it is difficult to observe genomic evolution in action because these dynamics are too slow in most organisms. To overcome this limitation, we sampled genomes from populations of Escherichia coli evolving in the laboratory for 10,000 generations. We analyzed the genomes for restriction fragment length polymorphisms (RFLP) using seven insertion sequences (IS) as probes; most polymorphisms detected by this approach reflect rearrangements (including transpositions) rather than point mutations. The evolving genomes became increasingly different from their ancestor over time. Moreover, tremendous diversity accumulated within each population, such that almost every individual had a different genetic fingerprint after 10,000 generations. As has been often suggested, but not previously shown by experiment, the rates of phenotypic and genomic change were discordant, both across replicate populations and over time within a population. Certain pivotal mutations were shared by all descendants in a population, and these are candidates for beneficial mutations, which are rare and difficult to find. More generally, these data show that the genome is highly dynamic even over a time scale that is, from an evolutionary perspective, very brief.

Mississippi River survey, New Orleans, Louisiana, 1895 (Image 1 of 4) (Raster Image)

This layer is a georeferenced raster image of the historic paper map entitled: Survey of the Mississippi River : made under the direction of the Mississippi River Commission : chart no. 76, projected from a trigonometrical survey made by the U.S. Coast Survey in 1874. It was published by the Mississippi River Commission ca. 1895. Scale 1:10,000. Covers the City of New Orleans and adjacent portions of Jefferson and St. Bernard Parishes. This layer is image 1 of 4 total images of the four sheet source map, representing the northeast portion of the map. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Louisiana State Plane Coordinate System, South NAD83 (in Feet) (Fipszone 1702). All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, or other information associated with the principal map. This map shows features such as roads, railroads, canals, drainage, vegetation/ground cover, land ownership in outlying areas, selected public, private, and industrial buildings, parks, cemeteries, Parish boundaries, ferry routes and more. Relief shown by contours. Detailed depths of the Mississippi River shown with soundings and dates of survey, and survey control points. River banks and bottom soil types shown. Includes index chart, list of authorities, and notes. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection as part of the Imaging the Urban Environment project. Maps selected for this project represent major urban areas and cities of the world, at various time periods. These maps typically portray both natural and manmade features at a large scale. The selection represents a range of regions, originators, ground condition dates, scales, and purposes.

La Gironde Rivière Area, Bordeaux, France, ca. 1910 (Image 1 of 2) (Raster Image)

This layer is a georeferenced raster image of the historic paper map entitled: Plan de Bordeaux. It was published ca. 1910. Scale 1:10,000. Covers La Gironde Rivière area, Bordeaux, France. This layer is image 1 of 2 total images of the two sheet source map, representing the southern portion of the map. Map in French. The image inside the map neatline is georeferenced to the surface of the earth and fit to the 'European Datum 1950 UTM 30N' projected coordinate system. All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, index maps, legends, or other information associated with the principal map. This map shows features such as roads, railroads, drainage, built-up areas and selected buildings and industries, docks and wharves, and more. Includes manuscript additions. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection as part of the Imaging the Urban Environment project. Maps selected for this project represent major urban areas and cities of the world, at various time periods. These maps typically portray both natural and manmade features at a large scale. The selection represents a range of regions, originators, ground condition dates, scales, and purposes.

China 1:200,000 : Sheet H-50-XXIV : Zhejiang Sheng Region (Raster Image)

This layer is a georeferenced raster image of the Soviet Army topographic sheet map covering a portion of the Zhejiang Sheng region, China (map quadrangle number: H-50-XXIV). It is from a series of Soviet Army topographic maps of China 1:200,000. The source map was published in 1979. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Pulkovo 1942 GK Zone 20N projection. Map collar information from the source map have been cropped and are not available as part of the raster image. China 1:200,000 topographic maps were prepared and printed by the Soviet Army General Headquarters, 1976-1991. China 1:200,000 maps are in Russian. Each source map in the series is printed in color. China 1:200,000 maps are typical topographic maps portraying both natural and manmade features. They show and name works of nature, such as mountains, valleys, lakes, rivers, vegetation, etc. They also identify the principal works and structures of humans, such as roads, railroads, paths, walls, boundaries, transmission lines, major buildings, etc. Relief is shown with standard contour intervals of 40 meters and/or spot heights.

China 1:200,000 : Sheet H-50-XXX : Zhejiang Sheng Region (Raster Image)

This layer is a georeferenced raster image of the Soviet Army topographic sheet map covering a portion of the Zhejiang Sheng region, China (map quadrangle number: H-50-XXX). It is from a series of Soviet Army topographic maps of China 1:200,000. Published in 1979, the source map was compiled from maps 1:100,000 published in 1977; corrected according to source material, 1970-1975. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Pulkovo 1942 GK Zone 20N projection. Map collar information from the source map have been cropped and are not available as part of the raster image. China 1:200,000 topographic maps were prepared and printed by the Soviet Army General Headquarters, 1976-1991. China 1:200,000 maps are in Russian. Each source map in the series is printed in color. China 1:200,000 maps are typical topographic maps portraying both natural and manmade features. They show and name works of nature, such as mountains, valleys, lakes, rivers, vegetation, etc. They also identify the principal works and structures of humans, such as roads, railroads, paths, walls, boundaries, transmission lines, major buildings, etc. Relief is shown with standard contour intervals of 40 meters and/or spot heights.

China 1:200,000 : Shaoxing Region, Zhejiang Sheng (Raster Image)

This layer is a georeferenced raster image of the Soviet Army topographic sheet map of the Shaoxing region, Zhejiang Sheng, China (map quadrangle number: H-51-XIX). It is from a series of Soviet Army topographic maps of China 1:200,000. Published in 1979, the source map was compiled from maps 1:100,000 published in 1977; corrected according to source material, 1973, 1974. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Pulkovo 1942 GK Zone 20N projection. Map collar information from the source map have been cropped and are not available as part of the raster image. China 1:200,000 topographic maps were prepared and printed by the Soviet Army General Headquarters, 1976-1991. China 1:200,000 maps are in Russian. Each source map in the series is printed in color. China 1:200,000 maps are typical topographic maps portraying both natural and manmade features. They show and name works of nature, such as mountains, valleys, lakes, rivers, vegetation, etc. They also identify the principal works and structures of humans, such as roads, railroads, paths, walls, boundaries, transmission lines, major buildings, etc. Relief is shown with standard contour intervals of 40 meters and/or spot heights.

China 1:200,000 : Xianju Region, Zhejiang Sheng (Raster Image)

This layer is a georeferenced raster image of the Soviet Army topographic sheet map of the Xianju region, Zhejiang Sheng, China (map quadrangle number: H-51-XXV). It is from a series of Soviet Army topographic maps of China 1:200,000. Published in 1986, this map reflects 1979 ground conditions. The source map was compiled from maps 1:100,000 published in 1979. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Pulkovo 1942 GK Zone 20N projection. Map collar information from the source map have been cropped and are not available as part of the raster image. China 1:200,000 topographic maps were prepared and printed by the Soviet Army General Headquarters, 1976-1991. China 1:200,000 maps are in Russian. Each source map in the series is printed in color. China 1:200,000 maps are typical topographic maps portraying both natural and manmade features. They show and name works of nature, such as mountains, valleys, lakes, rivers, vegetation, etc. They also identify the principal works and structures of humans, such as roads, railroads, paths, walls, boundaries, transmission lines, major buildings, etc. Relief is shown with standard contour intervals of 40 meters and/or spot heights.

China 1:200,000 : Wezhou Region, Zhejiang Sheng (Raster Image)

This layer is a georeferenced raster image of the Soviet Army topographic sheet map of the Wenzhou region, Zhejiang Sheng, China (map quadrangle number: H-51-XXXI). It is from a series of Soviet Army topographic maps of China 1:200,000. Published in 1986, this map reflects 1979 ground conditions. The source map was compiled from maps 1:100,000 published in 1979. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Pulkovo 1942 GK Zone 20N projection. Map collar information from the source map have been cropped and are not available as part of the raster image. China 1:200,000 topographic maps were prepared and printed by the Soviet Army General Headquarters, 1976-1991. China 1:200,000 maps are in Russian. Each source map in the series is printed in color. China 1:200,000 maps are typical topographic maps portraying both natural and manmade features. They show and name works of nature, such as mountains, valleys, lakes, rivers, vegetation, etc. They also identify the principal works and structures of humans, such as roads, railroads, paths, walls, boundaries, transmission lines, major buildings, etc. Relief is shown with standard contour intervals of 40 meters and/or spot heights.

China 1:200,000 : Lishui Region, Zhejiang Sheng (Raster Image)

This layer is a georeferenced raster image of the Soviet Army topographic sheet map of the Lishui region, Zhejiang Sheng, China (map quadrangle number: H-50-XXXVI). It is from a series of Soviet Army topographic maps of China 1:200,000. Published in 1979, the source map was compiled from maps 1:100,000 published in 1977; corrected according to source material, 1973-1975. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Pulkovo 1942 GK Zone 20N projection. Map collar information from the source map have been cropped and are not available as part of the raster image. China 1:200,000 topographic maps were prepared and printed by the Soviet Army General Headquarters, 1976-1991. China 1:200,000 maps are in Russian. Each source map in the series is printed in color. China 1:200,000 maps are typical topographic maps portraying both natural and manmade features. They show and name works of nature, such as mountains, valleys, lakes, rivers, vegetation, etc. They also identify the principal works and structures of humans, such as roads, railroads, paths, walls, boundaries, transmission lines, major buildings, etc. Relief is shown with standard contour intervals of 40 meters and/or spot heights.

Boston, Massachusetts Region, Digital Elevation Model (1:5,000), 2005 - Integer version

This raster layer represents surface elevation for the Boston Region, Massachusetts. This datalayer is a subset (covering only the Boston region) of the Massachusetts statewide digital elevation model. It was created from the digital terrain models that were produced as part of the 1:5,000 Black and White Digital Orthophoto imagery project. Cellsize is 5 meters by 5 meters. Each cell has an integer value, in meters, which represents its elevation above or below sea level.

Paris, France, ca. 4th Century (Time Series Map 1 of 8) (Raster Image)

This layer is a georeferenced raster image from the historic paper map series entitled: Lutece ... plan de la ville de Paris ..., par M.L.C.D.L.M. ; A. Coquart, delineavit et sculp. It was published by Jean & Pierre Cot in 1705. Scale [ca. 1:10,000]. This image is of map 1 entitled: Lutece, ou, premier plan de la ville de Paris: tiré de Cesar, de Strabon, de l'empereur Iulien, et d'Ammian Marcellin. The map represents Paris ca. 4th Century. Map in French.The image inside the map neatline is georeferenced to the surface of the earth and fit to the European Datum 1950, Universal Transverse Mercator (UTM) Zone 31N projected coordinate system. All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, index maps, legends, or other information associated with the principal map. This map shows features such as drainage, towns and villages, roads, selected buildings, ground cover, and more. Relief shown by hachures. This layer is part of a selection of digitally scanned and georeferenced historic maps from the Harvard Map Collection. These maps typically portray both natural and manmade features. The selection represents a range of originators, ground condition dates, scales, and map purposes.