Bartonella species detection in captive, stranded and free-ranging cetaceans

We present prevalence of Bartonella spp. for multiple cohorts of wild and captive cetaceans. One hundred and six cetaceans including 86 bottlenose dolphins (71 free-ranging, 14 captive in a facility with a dolphin experiencing debility of unknown origin, 1 stranded), 11 striped dolphins, 4 harbor porpoises, 3 Risso's dolphins, 1 dwarf sperm whale and 1 pygmy sperm whale (all stranded) were sampled. Whole blood (n = 95 live animals) and tissues (n = 15 freshly dead animals) were screened by PCR (n = 106 animals), PCR of enrichment cultures (n = 50 animals), and subcultures (n = 50 animals). Bartonella spp. were detected from 17 cetaceans, including 12 by direct extraction PCR of blood or tissues, 6 by PCR of enrichment cultures, and 4 by subculture isolation. Bartonella spp. were more commonly detected from the captive (6/14, 43%) than from free-ranging (2/71, 2.8%) bottlenose dolphins, and were commonly detected from the stranded animals (9/21, 43%; 3/11 striped dolphins, 3/4 harbor porpoises, 2/3 Risso's dolphins, 1/1 pygmy sperm whale, 0/1 dwarf sperm whale, 0/1 bottlenose dolphin). Sequencing identified a Bartonella spp. most similar to B. henselae San Antonio 2 in eight cases (4 bottlenose dolphins, 2 striped dolphins, 2 harbor porpoises), B. henselae Houston 1 in three cases (2 Risso's dolphins, 1 harbor porpoise), and untyped in six cases (4 bottlenose dolphins, 1 striped dolphin, 1 pygmy sperm whale). Although disease causation has not been established, Bartonella species were detected more commonly from cetaceans that were overtly debilitated or were cohabiting in captivity with a debilitated animal than from free-ranging animals. The detection of Bartonella spp. from cetaceans may be of pathophysiological concern.

Biology and population dynamics of cowcod (Sebastes levis) in the southern California Bight

Cowcod (Sebastes levis) is a large (100-cm-FL), long-lived (maximum observed age 55 yr) demersal rockfish taken in multispecies commercial and recreational fisheries off southern and central California. It lives at 20–500 m depth: adults (>44 cm TL) inhabit rocky areas at 90–300 m and juveniles inhabit fine sand and clay at 40–100 m. Both sexes have similar growth and maturity. Both sexes recruit to the fishery before reaching full maturity. Based on age and growth data, the natural mortality rate is about M =0.055/yr, but the estimate is uncertain. Biomass, recruitment, and mortality during 1951–98 were estimated in a delay-difference model with catch data and abundance indices. The same model gave less precise estimates for 1916–50 based on catch data and assumptions about virgin biomass and recruitment such as used in stock reduction analysis. Abundance indices, based on rare event data, included a habitat-area–weighted index of recreational catch per unit of fishing effort (CPUE index values were 0.003–0.07 fish per angler hour), a standardized index of proportion of positive tows in CalCOFI ichthyoplankton survey data (binomial errors, 0–13% positive tows/yr), and proportion of positive tows for juveniles in bottom trawl surveys (binomial errors, 0–30% positive tows/yr). Cowcod are overfished in the southern California Bight; biomass during the 1998 season was about 7% of the virgin level and recent catches have been near 20 metric tons (t)/yr. Projections based on recent recruitment levels indicate that biomass will decline at catch levels > 5 t/yr. Trend data indicate that recruitment will be poor in the near future. Recreational fishing effort in deep water has increased and has become more effective for catching cowcod. Areas with relatively high catch rates for cowcod are fewer and are farther offshore. Cowcod die after capture and cannot be released alive. Two areas recently closed to bottom fishing will help rebuild the cowcod stock.

Changes over time in the spatial distribution of walleye pollock (Theragra chalcogramma) in the Gulf of Alaska, 1984-1996

Triennial bottom trawl survey data from 1984 to 1996 were used to evaluate changes in the summer distribution of walleye pollock in the western and central Gulf of Alaska. Differences between several age groups of pollock were evaluated. Distribution was examined in relation to several physical characteristics, including bottom depth and distance from land. Interspecies associations were also analyzed with the Bray-Curtis clustering technique to better understand community structure. Our results indicated that although the population numbers decreased, high concentrations of pollock remained in the same areas during 1984–96. However, there was an increase in the number of stations where low-density pollock concentrations of all ages were observed, which resulted in a decrease in mean population density of pollock within the GOA region. Patterns emerging from our data suggested an alternative to Mac-Call’s “basin hypothesis” which states that as population numbers decrease, there should be a contraction of the population range to optimal habitats. During 1984–96 there was a concurrent precipitous decline in Steller sea lions in the Gulf of Alaska. The results of our study suggest that decreases in the mean density of adult pollock, the main food in the Steller sea lion diet, combined with slight changes in the distribution of pollock (age-1 pollock in particular) in the mid-1980s, may have contributed to decreased foraging efficiency in Steller sea lions. Our results support the prevailing conceptual model for pollock ontogeny, although there is evidence that substantial spawning may also occur outside of Shelikof Strait.

Stock-rebuilding time isopleths and constant-F stock-rebuilding plans for overfished stocks

Stock-rebuilding time isopleths relate constant levels of fishing mortality (F), stock biomass, and management goals to rebuilding times for overfished stocks. We used simulation models with uncertainty about FMSY and variability in annual intrinsic growth rates (ry) to calculate rebuilding time isopleths for Georges Bank yellowtail flounder, Limanda ferruginea, and cowcod rockfish, Sebastes levis, in the Southern California Bight. Stock-rebuilding time distributions from stochastic models were variable and right-skewed, indicating that rebuilding may take less or substantially more time than expected. The probability of long rebuilding times increased with lower biomass, higher F, uncertainty about FMSY, and autocorrelation in ry values. Uncertainty about FMSY had the greatest effect on rebuilding times. Median recovery times from simulations were insensitive to model assumptions about uncertainty and variability, suggesting that median recovery times should be considered in rebuilding plans. Isopleths calculated in previous studies by deterministic models approximate median, rather than mean, rebuilding times. Stochastic models allow managers to specify and evaluate the risk (measured as a probability) of not achieving a rebuilding goal according to schedule. Rebuilding time isopleths can be used for stocks with a range of life histories and can be based on any type of population dynamics model. They are directly applicable with constant F rebuilding plans but are also useful in other cases. We used new algorithms for simulating autocorrelated process errors from a gamma distribution and evaluated sensitivity to statistical distributions assumed for ry. Uncertainty about current biomass and fishing mortality rates can be considered with rebuilding time isopleths in evaluating and designing constant-F rebuilding plans.

Spawning behavior and larval development in Mopalia lignosa and Mopalia muscosa (Mollusca: Polyplacophora) in central California

Spawning behavior and external features of the larval development were studied in the chitons Mopalia muscosa and M. lignosa during the months of April-June, 1974, at Pacific Grove, California. ... The sequence of events in the development of the two species in the same, though some differences in timing exist.

The influence of seasonal precipitation and temperature variations on runoff in California and southwestern Oregon

EXTRACT (SEE PDF FOR FULL ABSTRACT): There is considerable seasonal-to-interannual variability in the runoff of major watersheds in the Sierra Nevada, Coastal, and Cascade ranges of California and southwestern Oregon. This variability is reflected in both the amount and timing of runoff. This study examines that variability using long historical streamflow records and seasonal mean temperature and precipitation. ... Precipitation is the only significant predictor for both amount and timing of runoff in the low elevation basins. As elevation increases, the models rely more and more on temperature to explain amount and timing of runoff.

Snow depth as an indicator of weather and climate in the Sierra Nevada

EXTRACT (SEE PDF FOR FULL ABSTRACT): The purpose of this study is to determine: (1) whether the cooperative station snow depth contains useful weather and climate information, (2) how cooperative snow depth variability is related to snowcourse variability, and (3) how it is related to other weather elements. From an examination of stations in the Sierra Nevada of California, it is clear that cooperative snow records and snowcourse records have consistent spatial and temporal variability. ... We show that high snow ratio (low density snow or high SD/Ppt) events have low temperatures and high amplitude atmospheric circulation patterns over the eastern North Pacific. In contrast, low snow ratio (high density or low SD/Ppt) events have warm temperatures and a zonal flow pattern with a southerly displaced storm track from Hawaii to the West Coast.

River salinity variations in response to discharge: examples from the western United States during the early 1900s

Major controls on river salinity (total dissolved solids) in the western United States are climate, geology, and human activity. Climate, in general, influences soil-river salinity via salt-balance variations. When climate becomes wetter, river discharge increases and soil-river salinity decreases; when climate becomes drier river discharge decreases and soil-river salinity increases. This study characterizes the river salinity response to discharge using statistical-dynamic methods. An exploratory analysis of river salinity, using early 1900s water quality surveys in the western United States, shows much river salinity variability is in response to storm and annual discharge. Presumably this is because river discharge is largely supported by surface flow.

High-resolution record of climate change in the Owens Lake Basin, California, for the period 52,500 to 12,500 YBP

EXTRACT (SEE PDF FOR FULL ABSTRACT): High-resolution oxygen-18 and total inorganic carbon (TIC) studies of cored sediments from the Owens Lake Basin, California, indicate that Owens Lake was hydrologically open (overflowing) most of the time between 52,500 and 12,500 carbon-14 YBP. ... The lack of a strong correspondence between North Atlantic climate records and the Owens Lake delta-oxygen-18 record has two possible explanations: (1) the sequence of large and abrupt climate change indicated in North Atlantic records is not global in scope and is largely confined to the North Atlantic and surrounding areas, or (2) Owens Lake is located in a part of the Great Basin that is relatively insensitive to the effects of climate perturbations recorded in the North Atlantic region.

Fluid Mechanics and Thermodynamics of Turbomachinery

For this new edition, author S. Larry Dixon is joined by Cesare Hall from the University of Cambridge, whose diverse background of teaching, research and work ...

Pentylenetetrazole-induced status epilepticus following training does not impair expression of morphine-induced conditioned place preference

Learning and memory play an important role in morphine addiction. Status epilepticus (SE) can impair the spatial and emotional learning and memory. However, little is known about the effects of SE on morphine-induced conditioned place preference (CPP). Th

Preliminary estimates of cetacean abundance in the northern Gulf of Mexico, and of selected cetacean species in the U.S. Atlantic Exclusive Economic Zone from vessel surveys

The Southeast Fisheries Science Center (SEFSC) initiated annual, vessel-based visual sampling surveys of northern Gulf of Mexico marine mammals in 1990 and conducted a similar survey in U.S. Atlantic Exclusive Economic Zone (EEZ) waters from Miami, Florida, to Cape Hatteras, North Carolina, in 1992. The primary goal of these surveys was to meet Marine Mammal Protection Act requirements for estimating abundance and monitoring trends of marine mammal stocks in United States waters. The surveys were designed to collect: 1) marine mammal sighting data to estimate abundance and to determine distribution and diversity; and 2) environmental data to evaluate factors which may affect the distribution, abundance and diversity of marine mammals. The preliminary analyses for abundance estimation from the 1990-1993 surveys are presented in this report.

Estimates of cetacean abundance in the northern Gulf of Mexico from vessel surveys

The Southeast Fisheries Science Center (SEFSC) initiated annual, vessel-based visual sampling surveys of northern Gulf of Mexico marine mammals in 1990. The primary goal of these surveys was to meet Marine Mammal Protection Act requirements for estimating abundance and monitoring trends of marine mammal stocks in United States waters. The surveys were designed to collect: 1) marine mammal sighting data to estimate abundance and to determine distribution and diversity; and 2) environmental data to evaluate factors which may affect the distribution, abundance and diversity of marine mammals. The analyses for abundance estimation from the 1991-1994 surveys are presented in this report.

Stratigraphic Model Predictions of Geoacoustic Properties

Geoacoustic properties of the seabed have a controlling role in the propagation and reverberation of sound in shallow-water environments. Several techniques are available to quantify the important properties but are usually unable to adequately sample the region of interest. In this paper, we explore the potential for obtaining geotechnical properties from a process-based stratigraphic model. Grain-size predictions from the stratigraphic model are combined with two acoustic models to estimate sound speed with distance across the New Jersey continental shelf and with depth below the seabed. Model predictions are compared to two independent sets of data: 1) Surficial sound speeds obtained through direct measurement using in situ compressional wave probes, and 2) sound speed as a function of depth obtained through inversion of seabed reflection measurements. In water depths less than 100 m, the model predictions produce a trend of decreasing grain-size and sound speed with increasing water depth as similarly observed in the measured surficial data. In water depths between 100 and 130 m, the model predictions exhibit an increase in sound speed that was not observed in the measured surficial data. A closer comparison indicates that the grain-sizes predicted for the surficial sediments are generally too small producing sound speeds that are too slow. The predicted sound speeds also tend to be too slow for sediments 0.5-20 m below the seabed in water depths greater than 100 m. However, in water depths less than 100 m, the sound speeds between 0.5-20-m subbottom depth are generally too fast. There are several reasons for the discrepancies including the stratigraphic model was limited to two dimensions, the model was unable to simulate biologic processes responsible for the high sound-speed shell material common in the model area, and incomplete geological records necessary to accurately predict grain-size