PumaPlex 1.0: Data generated during the development of the SNP markers and SNP genotypes of pumas

Pumas are one of the most studied terrestrial mammals because of their widespread distribution, substantial ecological impacts, and conflicts with humans. Extensive efforts, often employing genetic methods, are undertaken to manage this species. However, the comparison of population genetic data is difficult because few of the microsatellite loci chosen are shared across research programs. Here, we describe the development of PumaPlex, a high-throughput assay to genotype 25 single nucleotide polymorphisms in pumas. We validated PumaPlex in more than 700 North American pumas (Puma concolor couguar), and demonstrated its ability to generate reproducible genotypes and accurately identify individuals. Furthermore, we compared PumaPlex with traditional genotyping of 12 microsatellite loci in fecal DNA samples and found that PumaPlex produced significantly more genotypes with fewer false alleles. PumaPlex promotes the cross-laboratory comparison of genotypes, is easily expandable in the future, and is a valuable tool for the genetic monitoring and management of North American puma populations.

Daily pan-Arctic sea-ice lead maps for 2003-2015, with links to maps in netCDF format

The presence of sea-ice leads represents a key feature of the Arctic sea ice cover. Leads promote the flux of sensible and latent heat from the ocean to the cold winter atmosphere and are thereby crucial for air-sea-ice-ocean interactions. We here apply a binary segmentation procedure to identify leads from MODIS thermal infrared imagery on a daily time scale. The method separates identified leads into two uncertainty categories, with the high uncertainty being attributed to artifacts that arise from warm signatures of unrecognized clouds. Based on the obtained lead detections, we compute quasi-daily pan-Arctic lead maps for the months of January to April, 2003-2015. Our results highlight the marginal ice zone in the Fram Strait and Barents Sea as the primary region for lead activity. The spatial distribution of the average pan-Arctic lead frequencies reveals, moreover, distinct patterns of predominant fracture zones in the Beaufort Sea and along the shelf-breaks, mainly in the Siberian sector of the Arctic Ocean as well as the well-known polynya and fast-ice locations. Additionally, a substantial inter-annual variability of lead occurrences in the Arctic is indicated.

Gridded bathymetry from multibeam echosounder EM120 data of the cruise M72/5 (2007)

Bathymetry based on data recorded during M72-5 between 14.05.2007 and 06.06.2007 in the Black Sea. This cruise focused on the biogeochemical and microbiological processes around the oxic/anoxic interface of the chemocline in the water column and in shelf sediments as well as in the TOC-rich sediments of the deep Black Sea basins. A further important goal was to investigate the regional palaeo-climate on the basis of sedimentological analyses of early Holocene and previously deposited interglacial and limnic sediments.

Gridded bathymetry from multibeam echosounder HS-DS2 data of the cruise M51/4 (2001)

Bathymetry based on data recorded during M51-4 between 13.12.2001 and 28.12.2001 in the Black Sea. The purpose of the present-study was to sample sediments and the water columns of the nw/sw Black Sea and the E Marmara Sea to study a) a high resolution sediment records of Holocene climate, b) biogeochemical associated with deep anaerobic methane oxidation, and c) element cycling in the stratified water column. Bathymetric data (hydrosweep + parasound) was primarily used to choose appropriate sites for coring of undisturbed sediments. Samples were taken for future analyses of abundance and activity of bacteria, geochemistry and dating.

Gridded bathymetry from multibeam echosounder EM120 data of the cruise M72/3a and M72/3b (2007)

Bathymetry based on data recorded during M72-3 between 17.03.2007 and 23.04.2007 in the Black Sea. This cruise concentrated on interdisciplinary work on gas hydrates with a main focus on the gas hydrate transition zone in and below 750 m water depth. Gas hydrate environments have been studied in various geological settings, mainly of the eastern Black Sea. Origins, distributions and dynamics of methane and gas hydrates in sediments and also methane fluxes from the sediment to the water column have been the focus. Main working areas were the Sorokin Trough, an area south of the Kerch Strait and the Andrusov Ridge in Ukrainian waters and the Gudauta Ridge and Gurian Trough in Georgian waters.

Gridded bathymetry from multibeam echosounder EM12S data of the cruise TTR6/2 (1996)

Bathymetry based on data recorded during TTR6 between 05.07.1996 and 20.08.1996 in the Black Sea. In the central Black Sea, the aim of TTR-6 the investigation was a bathymetric map of a field of mud volcanoes known from the previous TTR cruises, during transit. In the Sorokin Trough, where gas hydrates were earlier obtained from sea bottom sediments the primary goals concerned the elucidation of the structure of clay diapiric folds and the searching for mud volcanoes and other evidence for fluid flux through the seafloor. The task of looking for the seafloor manifestation of deep fluid emanation was set in the Pallas Uplift area. The EM12s surveying on the Caucasian margin was aimed at the construction of the first detailed bathymetric map of this area.

Profile of sediment echo sounding with links to ParaSound data files and swath sonar multibeam bathymetry during METEOR cruise M70/2b

Two highly active mud volcanoes located in 990-1,265 m water depths were mapped on the northern Egyptian continental slope during the BIONIL expedition of R/V Meteor in October 2006. High-resolution swath bathymetry and backscatter imagery were acquired with an autonomous underwater vehicle (AUV)-mounted multibeam echosounder, operating at a frequency of 200 kHz. Data allowed for the construction of ~1 m pixel bathymetry and backscatter maps. The newly produced maps provide details of the seabed morphology and texture, and insights into the formation of the two mud volcanoes. They also contain key indicators on the distribution of seepage and its tectonic control. The acquisition of high-resolution seafloor bathymetry and acoustic imagery maps with an AUV-mounted multibeam echosounder fills the gap in spatial scale between conventional multibeam data collected from a surface vessel and in situ video observations made from a manned submersible or a remotely operating vehicle.