Mechanisms of negative regulation of inflammasome activation

Thesis (Ph.D.)--University of Washington, 2016-06

Active genetic elements present in the locus of enterocyte effacement in Escherichia coli O26 and their role in mobility

The locus of enterocyte effacement (LEE) is a large multigene chromosomal segment encoding gene products responsible for the generation of attaching and effacing lesions in many diarrheagenic Escherichia coli strains. A recently sequenced LEE harboring a pathogenicity island (PAI) from a Shiga toxin E. coli serotype 026 strain revealed a LEE PAI (designated LEE 026) almost identical to that obtained from a rabbit-specific enteropathogenic 015:H- strain. LEE 026 comprises 59,540 bp and is inserted at 94 min within the mature pheU tRNA locus. The LEE 026 PAI is flanked by two direct repeats of 137 and 136 bp (DR1 and DR2), as well as a gene encoding an integrase belonging to the P4 integrase family. We examined LEE 026 for horizontal gene transfer. By generating mini-LEE plasmids harboring only DR1 or DR2 with or without the integrase-like gene, we devised a simple assay to examine recombination processes between these sequences. Recombination was shown to be integrase dependent in a Delta recA E. coli K-12 strain background. Recombinant plasmids harboring a single direct repeat cloned either with or without the LEE 026 integrase gene were found to insert within the chromosomal pheU locus of E. coli K-12 strains with equal efficiency, suggesting that an endogenous P4-like integrase can substitute for this activity. An integrase with strong homology to the LEE 026 integrase was detected on the K-12 chromosome associated with the leuX tRNA locus at 97 min. Strains deleted for this integrase demonstrated a reduction in the insertion frequency of plasmids harboring only the DR into the pheU locus. These results provide strong evidence that LEE-harboring elements are indeed mobile and suggest that closely related integrases present on the chromosome of E. coli strains contribute to the dynamics of PAI mobility.

Neonatal enteral feeding tubes as loci for colonisation by members of the Enterobacteriaceae

Background The objective of this study was to determine whether neonatal nasogastric enteral feeding tubes are colonised by the opportunistic pathogen Cronobacter spp. (Enterobacter sakazakii) and other Enterobacteriaceae, and whether their presence was influenced by the feeding regime. Methods One hundred and twenty-nine tubes were collected from two neonatal intensive care units (NICU). A questionnaire on feeding regime was completed with each sample. Enterobacteriaceae present in the tubes were identified using conventional and molecular methods, and their antibiograms determined. Results The neonates were fed breast milk (16%), fortified breast milk (28%), ready to feed formula (20%), reconstituted powdered infant formula (PIF, 6%), or a mixture of these (21%). Eight percent of tubes were received from neonates who were 'nil by mouth'. Organisms were isolated from 76% of enteral feeding tubes as a biofilm (up to 107 cfu/tube from neonates fed fortified breast milk and reconstituted PIF) and in the residual lumen liquid (up to 107 Enterobacteriaceae cfu/ml, average volume 250 µl). The most common isolates were Enterobacter cancerogenus (41%), Serratia marcescens (36%), E. hormaechei (33%), Escherichia coli (29%), Klebsiella pneumoniae (25%), Raoultella terrigena (10%), and S. liquefaciens (12%). Other organisms isolated included C. sakazakii (2%),Yersinia enterocolitica (1%),Citrobacter freundii (1%), E. vulneris (1%), Pseudomonas fluorescens (1%), and P. luteola (1%). The enteral feeding tubes were in place between < 6 h (22%) to > 48 h (13%). All the S. marcescens isolates from the enteral feeding tubes were resistant to amoxicillin and co-amoxiclav. Of additional importance was that a quarter of E. hormaechei isolates were resistant to the 3rd generation cephalosporins ceftazidime and cefotaxime. During the period of the study, K. pneumoniae and S. marcescens caused infections in the two NICUs. Conclusion This study shows that neonatal enteral feeding tubes, irrespective of feeding regime, act as loci for the bacterial attachment and multiplication of numerous opportunistic pathogens within the Enterobacteriaceae family. Subsequently, these organisms will enter the stomach as a bolus with each feed. Therefore, enteral feeding tubes are an important risk factor to consider with respect to neonatal infections.

The delivery of bioactive proteins using biodegradable microspheres

In this project, antigen-containing microspheres were produced using a range of biodegradable polymers by single and double emulsion solvent evaporation and spray drying techniques. The proteins used in this study were mainly BSA, tetanus toxoid, F1 and V, Y. pestis subunit vaccines and the cytokine, interferon-gamma. The polymer chosen for use in the vaccine preparation will directly determine the characteristics of the formulation. Full in vitro analysis of the preparations was carried out, including surface hydrophobicity and drug release profiles. The influence of the surfactants employed on microsphere surface hydrophobicity was demonstrated. Preparations produced with polyhydroxybutyrate and poly(DTH carbonate) polymers were also shown to be more hydrophobic than PLA microspheres, which may enhance particle uptake by antigen presenting cells and Peyer's patches. Systematic immunisation with microspheres with a range of properties showed differences in the time course and extent of the immune response generated, which would allow optimisation of the dosing schedule to provide maximal response in a single dose preparation. Both systematic and mucosal responses were induced following oral delivery of microencapsulated tetanus toxoid indicating that the encapsulation of the antigen into a microsphere preparation provides protection in the gut and allows targeting of the mucosal-associated lymphoid tissue. Co-encapsulation of adjuvants for further enhancement of immune response was also carried out and the effect on loading and release pattern assessed. Co-encapsulated F1 and interferon-gamma was administered i.p. and the immune responses compared with singly encapsulated and free subunit antigen.

Potenzialità applicative delle alte pressioni di omogeneizzazione nel settore alimentare

Le alte pressioni di omogeneizzazione sono considerate una tecnologia non termica basata sull’applicazione di pressioni comprese tra 60 e 400 MPa ad alimenti fluidi o fluidificabili, con un tempo di trattamento di pochi millisecondi. Questa tecnologia permette di ottenere una serie di effetti sull’alimento che variano in rapporto all’entità del trattamento applicato e alla matrice fluida considerata. Pertanto, le alte pressioni di omogeneizzazione rappresentano una delle tecnologie maggiormente studiate in ragione delle loro buone opportunità applicative a livello industriale. Tale tecnologia viene comunemente applicata per modificare le proprietà funzionali di alcune macromolecole caratteristiche degli alimenti ed ha permesso l’ottenimento di prodotti di origine lattiero-casearia ed anche succhi di frutta caratterizzati da migliore texture, gusto, flavour e aumentata shelf-life. L’omogeneizzazione ad alta pressione, considerata come trattamento di sanitizzazione a freddo, è in grado di disattivare sia microrganismi patogeni che degradativi presenti in un determinato sistema, contribuendo a ridurre o contenere quindi lo sviluppo microbico nei prodotti alimentari. L’effetto di tale tecnologia, quando applicata a livelli compresi tra 60-200 MPa bar è stato valutato nei confronti di diversi patogeni quali Escherichia coli, Listeria monocytogenes, Yersinia enterocolitica, Staphylococcus aureus, Salmonella typhimurium microrganismi degradativi, come Bacillus subtilis e lieviti, deliberatamente inoculati in prodotti diversi.

Congrès international de pêche et de pisciculture. Comptes-rendus des séances. 1902 à St-Pétersbourg

Le Congrès International de pêche et de pisciculture a tenu sa séance d'ouverture à la salle du Musée Impérial d'Agriculture. La séance a été présidée par le Secrétaire d'Etat, le président de la Société Impériale Russe de pisciculture et de pêche. Quelques réflexions sur les problèmes des recherches hydrobiologiques, Les études limnologiques des bassins lacustres de la Russie, Eludes éxperimentales morphologiques et biologiques sur la bactérie pestis astaci, Hofer et du mode et genre de sa transmission. (...)

Stato microbiologico di pomodori distribuiti sul mercato del fresco

Le epidemie tossinfettive dovute al consumo di prodotti vegetali freschi hanno subito negli ultimi anni un rilevante incremento a causa della crescente centralizzazione delle produzioni in prossimità di aree destinate alle produzioni animali, all’aumento dell’importazione e del trasporto di prodotti provenienti da grandi distanze, all’aumento del settore dei prodotti di IV gamma e all’incremento delle fasce di popolazione più sensibili ai principali patogeni degli alimenti. I dati recenti indicano che, negli USA, le tossinfezioni associate al consumo di vegetali freschi sono passati dallo 0.7% del totale negli anni ‘70, al 6% negli anni ’90, al 13% nei primo anni 2000, fino a rappresentare nel 2014 il 46% delle tossinfezioni complessive. Il consumo di pomodori freschi è stato implicato in numerose tossinfezioni, anche di ampie dimensioni, in diverse aree del globo. Oltre alle salmonellosi, i pomodori costituiscono importanti veicoli per la trasmissione per altri patogeni quali Listeria monocytogenes, Escherichia coli VTEC e Yersinia enterocolitica. Gli studi sulla composizione quali-quantitativa dei microrganismi presenti sui pomodori al momento della loro commercializzazione sono pochissimi. Per queste ragioni, nel mio elaborato mi sono occupata di valutare alcuni parametri microbiologici campionando la superficie di pomodori a grappolo di diversa tipologia, prelevati dai banchi della distribuzione, venduti sfusi o preconfezionati. Le analisi condotte erano mirate alla ricerca della carica batterica totale, di Escherichia coli, enterobatteriacee, stafilococchi, muffe e lieviti. Dai risultati ottenuti si evince che non esistono effettivamente delle differenze significative sulle caratteristiche microbiologiche dei pomodori in base al tipo di confezionamento. Inoltre si può anche osservare come le cariche microbiche individuate siano relativamente contenute e paragonabili a quelle riportate in letteratura per prodotti analoghi considerati a basso rischio.

Enteropatógenos y antibióticos

La gastroenteritis infecciosa continúa siendo un problema de salud pública. La etiología bacteriana es la responsable de la mayoría de los casos graves. En nuestro país, Campylobacter y Salmonella son los géneros bacterianos más prevalentes, mientras que Yersinia y Shigella son mucho menos frecuentes. La mayoría de los casos suelen ser autolimitados y, en general, el tratamiento antibiótico no está indicado, salvo en pacientes con factores de riesgo de infección grave y en shigelosis. Ciprofloxacino, cefalosporinas de tercera generación, azitromicina, ampicilina, cotrimoxazol y doxiciclina son los fármacos más recomendados. El patrón de sensibilidad de las diferentes bacterias determina la elección del tratamiento antibiótico más adecuado. El objetivo de esta revisión es analizar la situación, las novedades y la evolución de la resistencia y la multirresistencia en estos 4 enteropatógenos.