Biomarker circadian rhythm profiles in critically ill mechanically ventilated patients

Objective: To explore the natural trajectory of core body temperature (CBT) and cortisol (CORT) circadian rhythms in mechanically ventilated intensive care unit (MV ICU) patients. ^ Design: Prospective, observational, time-series pilot study. ^ Setting: Medical-surgical and pulmonary ICUs in a tertiary care hospital. ^ Sample: Nine (F = 3, M = 6) adults who were mechanically ventilated within 12 hrs of ICU admission with mean ± SD age of 65.2 ± 14 years old. ^ Measurements: Core body temperature and environmental measures of light, sound, temperature, and relative humidity were logged in 1-min intervals. Hourly urine specimens and 2-hr interval blood specimens were collected for up to 7 consecutive days for CORT assay. Mechanical ventilation days, ICU length of stay, and ICU mortality were documented. Acute Physiology and Chronic Health Evaluation (APACHE) II scores were computed for each study day. The data of each biologic and environmental variable were analyzed using single cosinor analysis of 24-hr serial segments. One patient did not complete the study because mortality occurred within 8 hrs of enrollment. Nine ICU patients completed the study in 1.6 to 7.0 days. ^ Results: No normal circadian rhythm pattern was found when the cosinor-derived parameters of amplitude (one-half the peak-trough variability) and acrophase (peak time) were compared with cosinor-derived parameter reference ranges of healthy, diurnally active humans, although 83% of patient-day CBT segments showed statistically significant (p ≤ .05) and biologically meaningful (R2≥ 0.30) 24-hr rhythms with abnormal cosinor parameters. Cosinor parameters of the environmental temporal profiles showed 27% of light, 76% of ambient temperature, and 78% of relative humidity serial segments had a significant and meaningful 24-hr diurnal pattern. Average daily light intensity varied from 34 to 187 lx with a maximum light exposure of 1877 lx. No sound measurement segment had a statistically significant cosine pattern, and numerous 1-minute interval peaks ≥ 60 dB occurred around the clock. Average daily ambient temperature and relative humidity varied from 19 to 24°C and from 25% to 61%, respectively. There was no statistically significant association between CBT or clinical outcomes and cosinor-derived parameters of the environmental variables. Circadian rhythms of urine and plasma CORT were deferred for later analysis. ^ Conclusions: The natural trajectory of the CBT circadian rhythm in MV ICU patients demonstrated persistent cosinor parameter alteration, even when a significant and meaningful 24-hr rhythm was present. The ICU environmental measures showed erratic light and sound exposures. Room temperature and relative humidity data produced the highest rate of significant and meaningful diurnal 24-hr patterns. Additional research is needed to clarify relations among the CBT biomarker of the circadian clock and environmental variables of MV ICU patients. ^

Mean dynamic topography and oceanographic parameters estimated from an inverse model and satellite geodesy, with link to model result in one single NetCDF file (392 MB), including the inverse data error covariance

Geostrophic surface velocities can be derived from the gradients of the mean dynamic topography-the difference between the mean sea surface and the geoid. Therefore, independently observed mean dynamic topography data are valuable input parameters and constraints for ocean circulation models. For a successful fit to observational dynamic topography data, not only the mean dynamic topography on the particular ocean model grid is required, but also information about its inverse covariance matrix. The calculation of the mean dynamic topography from satellite-based gravity field models and altimetric sea surface height measurements, however, is not straightforward. For this purpose, we previously developed an integrated approach to combining these two different observation groups in a consistent way without using the common filter approaches (Becker et al. in J Geodyn 59(60):99-110, 2012, doi:10.1016/j.jog.2011.07.0069; Becker in Konsistente Kombination von Schwerefeld, Altimetrie und hydrographischen Daten zur Modellierung der dynamischen Ozeantopographie, 2012, http://nbn-resolving.de/nbn:de:hbz:5n-29199). Within this combination method, the full spectral range of the observations is considered. Further, it allows the direct determination of the normal equations (i.e., the inverse of the error covariance matrix) of the mean dynamic topography on arbitrary grids, which is one of the requirements for ocean data assimilation. In this paper, we report progress through selection and improved processing of altimetric data sets. We focus on the preprocessing steps of along-track altimetry data from Jason-1 and Envisat to obtain a mean sea surface profile. During this procedure, a rigorous variance propagation is accomplished, so that, for the first time, the full covariance matrix of the mean sea surface is available. The combination of the mean profile and a combined GRACE/GOCE gravity field model yields a mean dynamic topography model for the North Atlantic Ocean that is characterized by a defined set of assumptions. We show that including the geodetically derived mean dynamic topography with the full error structure in a 3D stationary inverse ocean model improves modeled oceanographic features over previous estimates.

Mean air temperatures of Greenland

Melt rate and surface temperature on the Greenland ice sheet are parameterized in terms of snow accumulation, mean annual air temperatur and mean July air temperature. Melt rates are calculated using positive degree-days, and firn warming (i.e. the positive deviation of the temperature at 10-15 m depth from the mean annual air temperature) is estimated from the calculated amount of refrozen melt water in the firn. A comparison between observed and calculated melt rates shows that the parameterization provides a reasonable estimate of the present ablation rates in West Greenland between 61°N and 76°N. The average equilibrium line elevation is estimated to be about 1150 m and 1000 m for West and East Greenland respectively, which is several hundred meter lower than previous estimates. However, the total annual ablation from the ice sheet is found to be about 280 km**3 of water per year which agrees well with most other estimates. The melt-rate model predicts significant melting and consequently significant firn warming even at the highest elevations of the South Greenland ice sheet, whereas a large region of central Greenland north of 70° N experiences little or no summer melting. This agrees with the distribution of the dry snow facics as given by BENSON (1962).

Mean sortable silt values from Holocene and glacial Scotia Sea sediments

The Antarctic Circumpolar Current is key to the mixing and ventilation of the world's oceans. This current flows from west to east between about 45° and 70° S connecting the Atlantic, Pacific and Indian oceans, and is driven by westerly winds and buoyancy forcing. High levels of productivity in the current regulate atmospheric CO2 concentrations. Reconstructions of the current during the last glacial period suggest that flow speeds were faster or similar to present, and it is uncertain whether the strength and position of the westerly winds changed. Here we reconstruct Antarctic Circumpolar Current bottom speeds through the constricting Drake Passage and Scotia Sea during the Last Glacial Maximum and Holocene based on the mean grain size of sortable silt from a suite of sediment cores. We find essentially no change in bottom flow speeds through the region, and, given that the momentum imparted by winds, and modulated by sea-ice cover, is balanced by the interaction of these flows with the seabed, this argues against substantial changes in wind stress. However, glacial flow speeds in the sea-ice zone south of 56° S were significantly slower than present, whereas flow in the north was faster, but not significantly so. We suggest that slower flow over the rough topography south of 56° S may have reduced diapycnal mixing in this region during the last glacial period, possibly reducing the diapycnal contribution to the Southern Ocean overturning circulation.

Mean annual surface displacement of the Laurichard rock glacier, French Alps

The Laurichard active rock glacier is the permafrost-related landform with the longest record of monitoring in France, including an annual geodetic survey, repeated geoelectrical campaigns from 1979 onwards and continuous recording of ground temperature since 2003. These data were used to examine changes in creep rates and internal structure from 1986 to 2006. The control that climatic variables exert on rock glacier kinematics was investigated over three time scales. Between the 1980s and the early 2000s, the main observed changes were a general increase in surface velocity and a decrease in internal resistivity. At a multi-year scale, the high correlation between surface movement and snow thickness in the preceding December appears to confirm the importance of snow cover conditions in early winter through their influence on the ground thermal regime. A comparison of surface velocities, regional climatic datasets and ground sub-surface temperatures over six years suggests a strong relation between rock glacier deformation and ground temperature, as well as a role for liquid water due to melt of thick snow cover. Finally, unusual surface lowering that accompanied peak velocities in 2004 may be due to a general thaw of the top of the permafrost, probably caused both by two successive snowy winters and by high energy inputs during the warm summer of 2003.

Global Ocean Biomes: Mean and time-varying maps (NetCDF 7.8 MB)

Large-scale studies of ocean biogeochemistry and carbon cycling have often partitioned the ocean into regions along lines of latitude and longitude despite the fact that spatially more complex boundaries would be closer to the true biogeography of the ocean. Herein, we define 17 open-ocean biomes classified from four observational data sets: sea surface temperature (SST), spring/summer chlorophyll a concentrations (Chl a), ice fraction, and maximum mixed layer depth (maxMLD) on a 1° × 1° grid. By considering interannual variability for each input, we create dynamic ocean biome boundaries that shift annually between 1998 and 2010. Additionally we create a core biome map, which includes only the grid cells that do not change biome assignment across the 13 years of the time-varying biomes. These biomes can be used in future studies to distinguish large-scale ocean regions based on biogeochemical function.

(Table 1) Mean temperatures in january and july, and total annual snowfall at Great Bear Lake and Great Slave Lake, Canada

The sensitivity of brightness temperature (T(B)) at 6.9, 10.7, and 18.7 GHz from Advanced Microwave Scanning Radiometer-Earth Observing System (AMSR-E) observations is investigated over five winter seasons (2002-2007) on Great Bear Lake and Great Slave Lake, Northwest Territories, Canada. The T(B) measurements are compared to ice thicknesses obtained with a previously validated thermodynamic lake ice model. Lake ice thickness is found to explain much of the increase of T(B) at 10.7 and 18.7 GHz. T(B) acquired at 18.7 GHz (V-pol) and 10.7 GHz (H-pol) shows the strongest relation with simulated lake ice thickness over the period of study (R**2 > 0.90). A comparison of the seasonal evolution of T(B) for a cold winter (2003-2004) and a warm winter (2005-2006) reveals that the relationship between T(B) and ice growth is stronger in the cold winter (2003-2004). Overall, this letter shows the high sensitivity of T(B) to ice growth and, thus, the potential of AMSR-E mid-frequency channels to estimate ice thickness on large northern lakes.