Migration of C1 to C8 volatile organic compounds in sediments at DSDP Hole 75-530A

The distribution of C1 to C8 hydrocarbons in sediment samples from DSDP Leg 75, Hole 530A, indicates that significant amounts of methane and ethane have migrated from organic-rich to organic-lean shales in close proximity. Most compounds larger than ethane are not migrating out of black shales, where they occur in high concentrations. These results lead to a general model for assessing migration. In addition, three shale types are identified on the basis of organic carbon and pyrolysis products and patterns.

Coccolithosphores and fossil organic compounds of sediment core MD01-2444

This study analyzes coccolithophore abundance fluctuations (e.g., Emiliania huxleyi, Gephyrocapsa specimens, and Florisphaera profunda) in core MD01-2444 sediment strata retrieved at the Iberian Margin, northeastern Atlantic Ocean. Coccolithophores are calcareous nannofossils, a major component of the oceanic phytoplankton, which provide information about past ecological and climatological variability. Results are supported by data on fossil organic compounds (sea surface temperatures, alkenones, and n-hexacosan-1-ol index) and geochemical analyses (benthic d13Ccc and planktonic d18Occ isotopes). Three scenarios are taken into account for this location at centennial-scale resolution over the last 70,000 years: the Holocene and the stadial and interstadial modes. The different alternatives are described by means of elements such as nutrients; upwelling phenomena; temperatures at surface and subsurface level; or the arrival of surface turbid, fresh, and cold waters due to icebergs, low sea level, increased aridity, and dust. During the Holocene, moderate primary productivity was observed (mainly concentrated in E. huxleyi specimens); surface temperatures were at maxima while the water column was highly ventilated by northern-sourced polar deep waters and warmer subsurface, nutrient-poor subtropical waters. Over most of the last glacial stadials, surface productivity weakened (higher F. profunda and reworked specimen percentages and lower diunsaturated and triunsaturated C37 alkenones); the arrival of cold Arctic surface waters traced by tetraunsaturated C37 peaks and large E. huxleyi, together with powerful ventilated southern-sourced polar deep waters, disturbed, in all likelihood, the delicate vertical equilibrium while preventing significant upwelling mixing. Finally, during the last glacial interstadials (lower F. profunda percentages, nonreworked material, and higher diunsaturated and triunsaturated C37 alkenones) a combined signal is observed: warm surface temperatures were concurrent with generally low oxygenation of the deep-sea floor, moderate arrival of northern-sourced deep waters, and subsurface cold, nutrient-rich, recently upwelled waters, probably of polar origin; these particular conditions may have promoted vertical mixing while enhancing surface primary productivity (mainly of Gephyrocapsa specimens).

Chemical characterization of dissolved organic compounds from coastal sea surface microlayers (Baltic Sea, Germany)

The physicochemical properties of the sea surface microlayer (SML), i.e. the boundary layer between the air and the sea, and its impact on air-sea exchange processes have been investigated for decades. However, a detailed description about these processes remains incomplete. In order to obtain a better chemical characterization of the SML, in a case study three pairs of SML and corresponding bulk water samples were taken in the southern Baltic Sea. The samples were analyzed for dissolved organic carbon and dissolved total nitrogen, as well as for several organic nitrogen containing compounds and carbohydrates, namely aliphatic amines, dissolved free amino acids, dissolved free monosaccharides, sugar alcohols, and monosaccharide anhydrates. Therefore, reasonable analytical procedures with respect to desalting and enrichment were established. All aliphatic amines and the majority of the investigated amino acids (11 out of 18) were found in the samples with average concentrations between 53 ng/l and 1574 ng/l. The concentrations of carbohydrates were slightly higher, averaging 2900 ng/l. Calculation of the enrichment factor (EF) between the sea surface microlayer and the bulk water showed that dissolved total nitrogen was more enriched (EF: 1.1 and 1.2) in the SML than dissolved organic carbon (EF: 1.0 and 1.1). The nitrogen containing organic compounds were generally found to be enriched in the SML (EF: 1.9-9.2), whereas dissolved carbohydrates were not enriched or even depleted (EF: 0.7-1.2). Although the investigated compounds contributed on average only 0.3% to the dissolved organic carbon and 0.4% to the total dissolved nitrogen fraction, these results underline the importance of single compound analysis to determine SML structure, function, and its potential for a transfer of compounds into the atmosphere.

Particulate matter and organic compounds in snow, ice, and water of the Lazarev and Cooperation Seas

Integrated studies of particulate matter and organic compounds in surface waters and the snow-ice cover by means of geochemical (concentrations of the particulate matter, Corg, hydrocarbons, lipids, and chlorophyll a) and optical techniques were performed in the Southern Ocean and in the East Atlantic Ocean along the vessel's route: Africa - Antarctica - Africa - St. Petersburg. Correlations between studied compounds were found. It was shown that supply of pollutants affects not only concentrations but also proportions of the considered compounds. New data were obtained on the processes of accumulation of particulate matter and organic compounds under ice formation.

On-line breath analysis of volatile organic compounds as a method for colorectal cancer detection

Background: Analysis of exhaled volatile organic compounds (VOCs) in breath is an emerging approach for cancer diagnosis, but little is known about its potential use as a biomarker for colorectal cancer (CRC). We investigated whether a combination of VOCs could distinct CRC patients from healthy volunteers. Methods: In a pilot study, we prospectively analyzed breath exhalations of 38 CRC patient and 43 healthy controls all scheduled for colonoscopy, older than 50 in the average-risk category. The samples were ionized and analyzed using a Secondary ElectroSpray Ionization (SESI) coupled with a Time-of-Flight Mass Spectrometer (SESI-MS). After a minimum of 2 hours fasting, volunteers deeply exhaled into the system. Each test requires three soft exhalations and takes less than ten minutes. No breath condensate or collection are required and VOCs masses are detected in real time, also allowing for a spirometric profile to be analyzed along with the VOCs. A new sampling system precludes ambient air from entering the system, so background contamination is reduced by an overall factor of ten. Potential confounding variables from the patient or the environment that could interfere with results were analyzed. Results: 255 VOCs, with masses ranging from 30 to 431 Dalton have been identified in the exhaled breath. Using a classification technique based on the ROC curve for each VOC, a set of 9 biomarkers discriminating the presence of CRC from healthy volunteers was obtained, showing an average recognition rate of 81.94%, a sensitivity of 87.04% and specificity of 76.85%. Conclusions: A combination of cualitative and cuantitative analysis of VOCs in the exhaled breath could be a powerful diagnostic tool for average-risk CRC population. These results should be taken with precaution, as many endogenous or exogenous contaminants could interfere as confounding variables. On-line analysis with SESI-MS is less time-consuming and doesn’t need sample preparation. We are recruiting in a new pilot study including breath cleaning procedures and spirometric analysis incorporated into the postprocessing algorithms, to better control for confounding variables.

Oceanic protection of prebiotic organic compounds from UV radiation

It is frequently stated that UV light would cause massive destruction of prebiotic organic compounds because of the absence of an ozone layer. The elevated UV flux of the early sun compounds this problem. This applies to organic compounds of both terrestrial and extraterrestrial origin. Attempts to deal with this problem generally involve atmospheric absorbers. We show here that prebiotic organic polymers as well as several inorganic compounds are sufficient to protect oceanic organic molecules from UV degradation. This aqueous protection is in addition to any atmospheric UV absorbers and should be a ubiquitous planetary phenomenon serving to increase the size of planetary habitable zones.

Cloning the expression of a mammalian gene involved in the reduction of methionine sulfoxide residues in proteins.

An enzyme that reduces methionine sulfoxide [Met(O)] residues in proteins [peptide Met(O) reductase (MsrA), EC 1.8.4.6; originally identified in Escherichia coli] was purified from bovine liver, and the cDNA encoding this enzyme was cloned and sequenced. The mammalian homologue of E. coli msrA (also called pmsR) cDNA encodes a protein of 255 amino acids with a calculated molecular mass of 25,846 Da. This protein has 61% identity with the E. coli MsrA throughout a region encompassing a 199-amino acid overlap. The protein has been overexpressed in E. coli and purified to homogeneity. The mammalian recombinant MsrA can use as substrate, proteins containing Met(O) as well as other organic compounds that contain an alkyl sulfoxide group such as N-acetylMet(O), Met(O), and dimethyl sulfoxide. Northern analysis of rat tissue extracts showed that rat msrA mRNA is present in a variety of organs with the highest level found in kidney. This is consistent with the observation that kidney extracts also contained the highest level of enzyme activity.

Reduction of haloacetonitriles and haloacetones in natural waters using ceramic nanofiltration membranes

Póster presentado en 19th International Congress of Chemical and Process Engineering, Prague, Czech Republic August 28th-September 1st, 2010.

Thermal Degradation of Tetrabromobisphenol A: Emission of Polybrominated Dibenzo-P-Dioxins and Dibenzofurans and other Organic Compounds

Paper submitted to the 31st International Symposium on Halogenated Persistent Organic Compounds (Dioxin 2011), Brussels, Belgium, 21-25 August 2011.