Tryptophan synthetase in plants

Infiltration experiments with the intact seeds of Bengal gram (Cicer arietinum) indicated that indole and serine are the immediate precursors of tryptophan in this legume. The enzyme, tryptophan synthetase, has been demonstrated in cell-free extracts of the resting seeds. The optimum pH of the reaction was 5.5, and the Km value for indole at a constant serine concentration of 10−4M was 0.57 × 10−4M. There was a specific requirement for pyridoxal phosphate. Heavy-metal ions were inhibitory.

Crystallization and preliminary X-ray crystallographic analysis of a galactose-specific lectin from Dolichos lablab

The galactose-specific lectin from the seeds of Dolichos lablab has been crystallized using the hanging-drop vapour-diffusion technique. The crystals belong to space group P1, with unit-cell parameters a = 73.99, b = 84.13, c = 93.15 angstrom, alpha = 89.92, beta = 76.01, gamma = 76.99 degrees. X-ray diffraction data to a resolution of 3.0 angstrom have been collected under cryoconditions ( 100 K) using a MAR imaging-plate detector system mounted on a rotating-anode X-ray generator. Molecular-replacement calculations carried out using the available structures of legume lectins as search models revealed that the galactose-specific lectin from D. lablab forms a tetramer similar to soybean agglutinin; two such tetramers are present in the asymmetric unit.

Urban ecosystem services at the plant-soil interface

Continuing urbanization is a crucial driver of land transformation, having widespread impacts on virtually all ecosystems. Terrestrial ecosystems, including disturbed ones, are dependent on soils, which provide a multitude of ecosystem services. As soils are always directly and/or indirectly impacted through land transformation, land cover change causes soil change. Knowledge of ecosystem properties and functions in soils is increasing in importance as humans continue to concentrate into already densely-populated areas. Urban soils often have hampered functioning due to various disturbances resulting from human activity. Innovative solutions are needed to bring the lacking ecosystem services and quality of life to these urban environments. For instance, the ecosystem services of the urban green infrastructure may be substantially improved through knowledge of their functional properties. In the research forming this thesis, the impacts of four plant species (Picea abies, Calluna vulgaris, Lotus corniculatus and Holcus lanatus) on belowground biota and regulatory ecosystem services were investigated in two different urban soil types. The retention of inorganic nitrogen and phosphorus in the plant-soil system, decomposition of plant litter, primary production, and the degradation of polycyclic aromatic hydrocarbons (PAHs) were examined in the field and under laboratory conditions. The main objective of the research was to determine whether the different plant species (representing traits with varying litter decomposability) will give rise to dissimilar urban belowground communities with differing ecological functions. Microbial activity as well as the abundance of nematodes and enchytraeid worm biomass was highest below the legume L. corniculatus. L. corniculatus and the grass H. lanatus, producing labile or intermediate quality litter, enhanced the proportion of bacteria in the soil rhizosphere, while the recalcitrant litter-producing shrub C. vulgaris and the conifer P. abies stimulated the growth of fungi. The loss of nitrogen from the plant-soil system was small for H. lanatus and the combination of C. vulgaris + P. abies, irrespective of their energy channel composition. These presumably nitrogen-conservative plant species effectively diminished the leaching losses from the plant-soil systems with all the plant traits present. The laboratory experiment revealed a difference in N allocation between the plant traits: C. vulgaris and P. abies sequestered significantly more N in aboveground shoots in comparison to L. corniculatus and H. Lanatus. Plant rhizosphere effects were less clear for phosphorus retention, litter decomposition and the degradation of PAH compounds. This may be due to the relatively short experimental durations, as the maturation of the plant-soil system is likely to take a considerably longer time. The empirical studies of this thesis demonstrated that the soil communities rapidly reflect changes in plant coverage, and this has consequences for the functionality of soils. The energy channel composition of soils can be manipulated through plants, which was also supported by the results of the separate meta-analysis conducted in this thesis. However, further research is needed to understand the linkages between the biological community properties and ecosystem services in strongly human-modified systems.

Crystallization and preliminary X-ray diffraction analysis of a galactose-specific lectin from the seeds of Butea monosperma

The galactose-specific lectin from the seeds of Butea monosperma has been crystallized by the hanging-drop vapour-diffusion technique. The crystals belonged to space group P1, with unit-cell parameters a = 78.45, b = 78.91, c = 101.85 A, alpha = 74.30, beta = 76.65, gamma = 86.88 degrees. X-ray diffraction data were collected to a resolution of 2.44 A under cryoconditions (100 K) using a MAR image-plate detector system mounted on a rotating-anode X-ray generator. Molecular-replacement calculations carried out using the coordinates of several structures of legume lectins as search models indicate that the galactose-specific lectin from B. monosperma forms an octamer.

Crystallization and preliminary X-ray diffraction analysis of a galactose-specific lectin from the seeds of Butea monosperma

The galactose-specific lectin from the seeds of Butea monosperma has been crystallized by the hanging-drop vapour-diffusion technique. The crystals belonged to space group P1, with unit-cell parameters a = 78.45, b = 78.91, c = 101.85 A, alpha = 74.30, beta = 76.65, gamma = 86.88 degrees. X-ray diffraction data were collected to a resolution of 2.44 A under cryoconditions (100 K) using a MAR image-plate detector system mounted on a rotating-anode X-ray generator. Molecular-replacement calculations carried out using the coordinates of several structures of legume lectins as search models indicate that the galactose-specific lectin from B. monosperma forms an octamer.

Crystallization and preliminary X-ray studies of a galactose-specific lectin from the seeds of Spatholobus parviflorus

A galactose-specific seed lectin was purified from the legume Spatholobus parviflorus and crystallized using the hanging-drop vapour-diffusion technique. The crystals belonged to space group P1, with unit-cell parameters a = 60.998, b = 60.792, c = 78.179 angstrom, alpha = 101.32, beta = 91.38, gamma = 104.32 degrees. X-ray diffraction data were collected under cryoconditions (100 K) to a resolution of 2.04 angstrom using a MAR image-plate detector system mounted on a rotating-anode X-ray (Cu K alpha) generator. Molecular replacement using legume-lectin coordinates as a search model gave a tetrameric structure.

Structural diversity and ligand specificity of lectins. The Bangalore effort

Structural studies in this laboratory encompass four of the five major classes of plant lectins, including the one discovered by us. In addition to addressing issues specific to individual lectins, the work provided insights into protein folding, quaternary association and generation of ligand specificity. Legume and beta-prism fold lectins constitute families of proteins in which small alterations in essentially the same tertiary structure lead to large variations in quaternary structure, including that involving an open structure. Strategies for generating ligand specificity include water bridges, variation in loop length, post translational modification and oligomerization. Three of the structural classes investigated have subunits with three-fold symmetry. The symmetry in the structure is reflected in the sequence to different extents in different subclasses. The evolutionary implications of this observation have been explored. The work on lectins has now been extended to those from mycobacteria.

Impact of glycosylation on stability, structure and unfolding of soybean agglutinin (SBA): an insight from thermal perturbation molecular dynamics simulations

Glycosylation has been recognized as one of the most prevalent and complex post-translational modifications of proteins involving numerous enzymes and substrates. Its effect on the protein conformational transitions is not clearly understood yet. In this study, we have examined the effect of glycosylation on protein stability using molecular dynamics simulation of legume lectin soybean agglutinin (SBA). Its glycosylated moiety consists of high mannose type N-linked glycan (Man(9)GlcNAc(2)). To unveil the structural perturbations during thermal unfolding of these two forms, we have studied and compared them to the experimental results. From the perspective of dynamics, our simulations revealed that the nonglycosylated monomeric form is less stable than corresponding glycosylated form at normal and elevated temperatures. Moreover, at elevated temperature thermal destabilization is more prominent in solvent exposed loops, turns and ends of distinct beta sheets. SBA maintains it folded structure due to some important saltbridges, hydrogen bonds and hydrophobic interactions within the protein. The reducing terminal GlcNAc residues interact with the protein residues VAL161, PRO182 and SER225 via hydrophobic and via hydrogen bonding with ASN 9 and ASN 75. Our simulations also revealed that single glycosylation (ASN75) has no significant effect on corresponding cis peptide angle orientation. This atomistic description might have important implications for understanding the functionality and stability of Soybean agglutinin.

Archeal lectins: An identification through a genomic search

Forty-six lectin domains which have homologues among well established eukaryotic and bacterial lectins of known three-dimensional structure, have been identified through a search of 165 archeal genomes using a multipronged approach involving domain recognition, sequence search and analysis of binding sites. Twenty-one of them have the 7-bladed -propeller lectin fold while 16 have the -trefoil fold and 7 the legume lectin fold. The remainder assumes the C-type lectin, the -prism I and the tachylectin folds. Acceptable models of almost all of them could be generated using the appropriate lectins of known three-dimensional structure as templates, with binding sites at one or more expected locations. The work represents the first comprehensive bioinformatic study of archeal lectins. The presence of lectins with the same fold in all domains of life indicates their ancient origin well before the divergence of the three branches. Further work is necessary to identify archeal lectins which have no homologues among eukaryotic and bacterial species. Proteins 2016; 84:21-30. (c) 2015 Wiley Periodicals, Inc.

Cultura de tecidos e análise fitoquímica de Arachis repens HANDRO.

Os representantes do gênero Arachis são conhecidos como amendoim, e suas sementes possuem grande quantidade de óleos e proteínas, podendo ser consumidas cruas. A espécie mais cultivada do gênero é Arachis hypogaea, que possui grande importância comercial. Outras espécies são também utilizadas para controle das ervas daninhas e cobertura do solo, assim como ornamentais e na alimentação. Arachis repens, popularmente conhecida como grama amendoim, é utilizada como planta ornamental, na formação de pastagens, como forragem e para cobertura do solo em substituição a várias espécies comuns de grama. Diversas substâncias bioativas têm sido identificadas em A. hypogaea. Contudo, estas substâncias ainda não foram descritas em outras espécies do gênero. O objetivo deste trabalho foi o estabelecimento de sistemas de cultivo in vitro para Arachis repens, visando à micropropagação e à análise comparativa da produção de resveratrol em extratos alcoólicos dos materiais produzidos in vitro, em comparação com as plantas in vivo. Segmentos nodais, internodais e foliares foram excisados de plantas in vitro e inoculados em meio MS suplementado com diferentes concentrações de BAP, TDZ, AIA e KIN, utilizados isoladamente ou em combinação. Os explantes apresentaram respostas distintas de acordo com o regulador de crescimento utilizado. Na presença de BAP foi observada a formação de calos compactos, com formação de brotos em diferentes taxas. Na presença de TDZ, segmentos nodais e internodais formaram calos compactos em todas as concentrações. Segmentos nodais cultivados na presença de diferentes concentrações de AIA em combinação com KIN apresentaram a formação de calogênese. Foi também realizada uma avaliação da atividade antioxidante e a presença de fenóis totais em extratos de diferentes materiais in vivo e produzidos in vitro. Nas análises por meio de CLAE, foi possível detectar a presença de resveratrol tanto nos materiais in vivo, quanto os produzidos in vitro. Dessa forma, o trabalho forneceu resultados preliminares sobre as possibilidades de utilização de A. repens para a produção de metabólitos especiais.

PGPRs and nitrogen-fixing legumes: a perfect team for efficient Cd phytoremediation?

Cadmium (Cd) is a toxic, biologically non-essential and highly mobile metal that has become an increasingly important environmental hazard to both wildlife and humans. In contrast to conventional remediation technologies, phytoremediation based on legume rhizobia symbiosis has emerged as an inexpensive decontamination alternative which also revitalize contaminated soils due to the role of legumes in nitrogen cycling. In recent years, there is a growing interest in understanding symbiotic legume rhizobia relationship and its interactions with Cd. The aim of the present review is to provide a comprehensive picture of the main effects of Cd in N-2-fixing leguminous plants and the benefits of exploiting this symbiosis together with plant growth promoting rhizobacteria to boost an efficient reclamation of Cd-contaminated soils.

浑善达克沙地优势豆科植物 光合生理特性研究

　　氮素是植物光合生产的决定性因素，尤其是在沙地草地生态系统中，氮素贫乏往往限制植物的生长发育。因此，研究沙地植物光合作用与叶片N含量之间的关系，以及不同植物功能型氮素利用效率，有助于理解不同植物资源利用效率的差异。以浑善达克沙地分布的80种植物为研究对象，对不同生境(固定沙丘、丘间低地和湿地)、不同生活型(乔、灌、草)、不同光合途径(C3和C4)以及豆科和非豆科植物等功能型进行研究，结果表明：无论在单位叶面积水平还是单位干重水平上的叶片氮含量，均与光合速率成极显著正相关，但单位氮素的光合利用效率在不同生境以及不同功能型之间差异很大;光合氮素利用效率表现为：湿地植物>沙丘>丘间低地植物;草本植物>灌木>乔木;C4草本>C3草本植物，非豆科植物>豆科植物。 　　为了验证浑善达克沙地豆科植物是否比非豆科植物具有更高的光合潜力，我们比较研究了3种优势豆科植物小叶锦鸡儿(Caragana microphylla)、木岩黄芪(Hedysarum fruticosum var. lignosum)、披针叶黄华(Thermopsis lanceolata)和2种非豆科植物羊草(Leymus chinensis)和黄柳(Salix gordejeviii)，结果表明并非所有豆科植物都比非豆科植物有着显著高的光合速率，仅木岩黄芪表现出较高的光合速率，其它两种豆科植物的光合速率和羊草、黄柳的差异并不显著(P>0.05)，甚至低于后者，这是因为氮素利用效率(PNUE)在其中起关键作用，通过对影响PNUE的几个主要因素进行分析得出：叶绿素对光能的吸收、光化学转换效率和CO2分压并不是构成豆科和非豆科植物PNUE差异的主要因素，而Rubisco羧化效率决定了所实验的5种植物对氮素利用效率的高低。 　　木岩黄芪在浑善达克沙地的沙丘上为优势种，甚至成为流动沙丘的先锋种。除了其显著高的氮含量外，对沙丘胁迫生境的光合适应性是我们关注的另一个重点。通过对木岩黄芪和其伴生种黄柳的光反应曲线以及光合日动态的研究，发现木岩黄芪具有显著高的光合速率、水分利用效率和PSII 光化学效率，其忍受中午强光和高温的能力较强(即“光合午休”现象不明显)。另外，该物种还表现出了显著高的光饱和点和低光补偿点。 对木岩黄芪的模拟降雨试验结果表明：气体交换参数以及叶绿素荧光参数均受到干旱和模拟降雨的影响，其中气孔因素和非气孔因素共同决定了干旱条件下木岩黄芪光合速率的降低;但降雨解除干旱后，气孔导度恢复较快，而PSII 潜在活性和PSII 光能转换效率的恢复却比较缓慢。在0-15mm的降雨量范围内，随降雨量的增加各项生理指标不断升高，但大于15mm的降雨量对木岩黄芪影响不大，因此木岩黄芪可被视为低耗水型植物。 　　对木岩黄芪光合酶的研究结果表明，其C4光合酶的活性很高，磷酸稀醇式丙酮酸羧化酶(PEPcase)、NAD-苹果酸酶(NAD-ME)、NADP-苹果酸酶(NADP-ME)、NAD-苹果酸脱氢酶(NAD-MDH)、NADP-苹果酸脱氢酶(NADP-MDH) 和丙酮酸磷酸双激酶(PPDK)等酶的活性，在整个生育期内为黄柳的5倍以上，但稳定性碳同位素测定结果却表明木岩黄芪为C3植物。因此，我们认为C3豆科植物木岩黄芪体内可能存在着C4光合途径，这种机制使得其对于流动沙丘的胁迫环境有着很强的适应性和很高的资源利用效率。

内蒙古多伦典型草原几种植物叶片性状与生物量及降雨量关系的初步研究

植物性状是植物与环境长期互作过程中表现出的内在或外部的特征。目前植物生态学界关于植物性状的研究，主要包括以下三个方面的研究内容：植物性状与环境因子间的关系，反映植物性状对环境变化的响应或适应机制；植物性状与生态系统功能的关系，以更好地揭示生态系统功能的内在驱动机制；植物性状间的相关关系和消长对策，反映植物性状的协同进化机制。 本试验所在地区内蒙古多伦十三里滩为典型克氏针茅草原，水分为当地生态系统的主要限制因素。我们在当地的围封样地内，采用人工模拟生长季降雨变化梯度的方法，研究了内蒙古典型草原几种常见植物叶片功能性状对模拟降雨量梯度的响应、性状之间的协变关系以及植物性状与地上部分生物量间的关系。研究工作在2005-2006年期间进行。观测的叶片性状包括叶片干物质含量(LDMC)，比叶面积(SLA)和叶片氮含量(LNCmass, LNCarea)，以地上部分生物量作为年净初级生产力(ANPP)估计，降雨量梯度模拟了两个水平，即对照(接收正常降雨)和增雨。主要结论如下：1) 叶片性状在降雨量梯度上的变化趋势在物种水平上表现出多样化的特点，性状的变化趋势是否有显著的格局取决于物种或特定性状。2) 叶片性状对水分梯度的响应在功能群水平上表现出各自的特点，Grass功能群对水分梯度的响应敏感性较低，Forb居中，Legume表现出较强的敏感性，表明Grass功能群对水分的耐受性比较强，这在一定程度上解释了当地克氏针茅草原上目前以禾草类为主的现状，对物种之间的替代有一定的指示性。而群落水平上探讨性状在环境梯度上的变异趋势，研究结论存在较大的不确定性，主要是难以区分环境和系统发育背景对植物性状的影响。3)叶片功能性状间的协变关系，不同物种因其自身发生背景不同，在不同环境背景下总体表现出一致的变化规律，但也存在例外。相对而言，对功能性状间协变关系的研究在物种水平或功能群水平上更有意义，而在群落水平上所得结论，可能会掩盖了群落内部不同物种或不同功能群间的信息。4)叶片功能性状与草原地上部生物量的关系在功能群水平上呈显著正相关关系，再次验证了土壤含水量的变化同土壤氮元素的动态，共同影响了植物的氮利用策略，进一步影响了初级生产力等和氮元素直接相关植物性状参数。在群落水平上叶片功能性状与生物量的之间并没有表现出可遵循的规律性，说明叶片功能性状对生物量的作用更多地局限在群落内部的组织层次上发挥作用。5)本研究的虽然从不同的组织层次上探讨了叶片功能性状对环境、性状之间的协变关系以及与地上部分生物量间的关系，由于植物性状变化幅度可能与环境梯度密切相关，如果模拟环境梯度不够大，可能会影响结论的普遍性。此外，本次野外控制试验时间较短，数据量偏少，本文的结论尚需要进一步验证。

The role of macrophytes in the economy of the lower Sondu-Miriu river of Lake Victoria

This paper highlights the results of a 12 month's ecological study of macrophytes and their role in the economy of the lower Sondu-Miriu river of Lake Victoria. A total of 34 species of aquatic macrophytes were identified. These were grouped as emergent, floating leaved, free floating and submersed. The major community type identified were dominated by Cladium jamaicanse (Crantz) Kurk., Cyperus paprus (L.) and Cyperus latifolius (Poir). The study observed an over dependence on macrophytes by the local community for the supply of bedding, grazing fields, fuel, roofing and other building materials. The white (heart) of Typha shoot, Nile cabbage (Pistia stratiotes and a legume solanum nigrum traditionally known as "osuga" are used as vegetables by local community. The only source of protein in this arid region is the fish caught in the swamps and birds which inhabit the swamp. The swamp provides the only source of green pasture in the dry season for the animals. An export oriented economy has developed involving mat making and basket weaving with exports reaching as far as Japan. The study proposes a rational and sustainable exploitation of the littoral zone to support the adjacent rural community.

长期施用氮、磷和有机肥对不同种植体系土壤有效硫累积的影响

以22年定位试验为基础,研究了长期施用氮、磷和有机肥(NPM)对不同种植体系土壤有效硫在剖面上分布与累积状况。结果表明,在60—80 cm土层各处理出现第一个累积峰,累积峰值为粮饲轮作31.3,玉米连作29.2,小麦连作27.9,粮豆轮作25.6,苜蓿连作24.0 mg/kg;在140—180 cm土层各处理又出现有效硫的第二个累积峰,累积峰值为粮饲轮作44.7,粮豆轮作43.1,小麦连作41.0,玉米连作39.7,苜蓿连作36.5 mg/kg。第二累积峰值均大于第一累积峰值。0—200 cm土层有效硫总累积量粮饲轮作高达746.3 kg/hm~2,其次为玉米连作640.6,粮豆轮作为638.3,小麦连作为622.4,苜蓿连作最小为557.3 kg/hm~2。长期施用磷肥和有机肥是有效硫在土壤中累积的主要因素,有效硫在土壤剖面上有向深层迁移的趋势。不同作物对硫的吸收利用差异和不同种植方式对有效硫的累积与分布产生影响。