ESCMID* guideline for the diagnosis and management of Candida diseases 2012: developing European guidelines in clinical microbiology and infectious diseases.

The process to develop a guideline in a European setting remains a challenge. The ESCMID Fungal Infection Study Group (EFISG) successfully achieved this endeavour. After two face-to-face meetings, numerous telephone conferences, and email correspondence, an ESCMID task force (basically composed of members of the Society's Fungal Infection Study Group, EFISG) finalized the ESCMID diagnostic and management/therapeutic guideline for Candida diseases. By appreciating various patient populations at risk for Candida diseases, four subgroups were predefined, mainly ICU patients, paediatric, HIV/AIDS and patients with malignancies including haematopoietic stem cell transplantation. Besides treatment recommendations, the ESCMID guidelines provide guidance for diagnostic procedures. For the guidelines, questions were formulated to phrase the intention of a given recommendation, for example, outcome. The recommendation was the clinical intervention, which was graded by a score of A-D for the 'Strength of a recommendation'. The 'level of evidence' received a score of I-III. The author panel was approved by ESCMID, European Organisation for Research and Treatment of Cancer, European Group for Blood and Marrow Transplantation, European Society of Intensive Care Medicine and the European Confederation of Medical Mycology. The guidelines followed the framework of GRADE and Appraisal of Guidelines, Research, and Evaluation. The drafted guideline was presented at ECCMID 2011 and points of discussion occurring during that meeting were incorporated into the manuscripts. These ESCMID guidelines for the diagnosis and management of Candida diseases provide guidance for clinicians in their daily decision-making process.

Molecular detection and identification of zygomycetes species from paraffin-embedded tissues in a murine model of disseminated zygomycosis: a collaborative European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Fungal Infection Study Group (EFISG) evaluation.

The present study was performed to assess the interlaboratory reproducibility of the molecular detection and identification of species of Zygomycetes from formalin-fixed paraffin-embedded kidney and brain tissues obtained from experimentally infected mice. Animals were infected with one of five species (Rhizopus oryzae, Rhizopus microsporus, Lichtheimia corymbifera, Rhizomucor pusillus, and Mucor circinelloides). Samples with 1, 10, or 30 slide cuts of the tissues were prepared from each paraffin block, the sample identities were blinded for analysis, and the samples were mailed to each of seven laboratories for the assessment of sensitivity. A protocol describing the extraction method and the PCR amplification procedure was provided. The internal transcribed spacer 1 (ITS1) region was amplified by PCR with the fungal universal primers ITS1 and ITS2 and sequenced. As negative results were obtained for 93% of the tissue specimens infected by M. circinelloides, the data for this species were excluded from the analysis. Positive PCR results were obtained for 93% (52/56), 89% (50/56), and 27% (15/56) of the samples with 30, 10, and 1 slide cuts, respectively. There were minor differences, depending on the organ tissue, fungal species, and laboratory. Correct species identification was possible for 100% (30 cuts), 98% (10 cuts), and 93% (1 cut) of the cases. With the protocol used in the present study, the interlaboratory reproducibility of ITS sequencing for the identification of major Zygomycetes species from formalin-fixed paraffin-embedded tissues can reach 100%, when enough material is available.

Relevance of cohort studies for the study of transplant infectious diseases.

The debate on the merits of observational studies as compared with randomized trials is ongoing. We will briefly touch on this subject, and demonstrate the role of cohort studies for the description of infectious disease patterns after transplantation. The potential benefits of cohort studies for the clinical management of patients outside of the expected gain in epidemiological knowledge are reviewed. The newly established Swiss Transplantation Cohort Study and in particular the part focusing on infectious diseases will serve as an illustration. A neglected area of research is the indirect value of large, multicenter cohort studies. These benefits can range from a deepened collaboration to the development of common definitions and guidelines. Unfortunately, very few data exist on the role of such indirect effects on improving quality of patient management. This review postulates an important role for cohort studies, which should not be viewed as inferior but complementary to established research tools, in particular randomized trials. Randomized trials remain the least bias-prone method to establish knowledge regarding the significance of diagnostic or therapeutic measures. Cohort studies have the power to reflect a real-world situation and to pinpoint areas of knowledge as well as of uncertainty. Prerequisite is a prospective design requiring a set of inclusive data coupled with the meticulous insistence on data retrieval and quality.

Revised definitions of invasive fungal disease from the European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) Consensus Group.

BACKGROUND: Invasive fungal diseases are important causes of morbidity and mortality. Clarity and uniformity in defining these infections are important factors in improving the quality of clinical studies. A standard set of definitions strengthens the consistency and reproducibility of such studies. METHODS: After the introduction of the original European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) Consensus Group definitions, advances in diagnostic technology and the recognition of areas in need of improvement led to a revision of this document. The revision process started with a meeting of participants in 2003, to decide on the process and to draft the proposal. This was followed by several rounds of consultation until a final draft was approved in 2005. This was made available for 6 months to allow public comment, and then the manuscript was prepared and approved. RESULTS: The revised definitions retain the original classifications of "proven," "probable," and "possible" invasive fungal disease, but the definition of "probable" has been expanded, whereas the scope of the category "possible" has been diminished. The category of proven invasive fungal disease can apply to any patient, regardless of whether the patient is immunocompromised, whereas the probable and possible categories are proposed for immunocompromised patients only. CONCLUSIONS: These revised definitions of invasive fungal disease are intended to advance clinical and epidemiological research and may serve as a useful model for defining other infections in high-risk patients.

Pharmacogenomics of HIV Therapy: Summary of a Workshop Sponsored by the National Institute of Allergy and Infectious Diseases

Approximately 1 million people in the United States and over 30 million worldwide are living with human immunodeficiency virus type 1 (HIV-1). While mortality from untreated infection approaches 100%, survival improves markedly with use of contemporary antiretroviral therapies (ART). In the United States, 25 drugs are approved for treating HIV-1, and increasing numbers are available in resource-limited countries. Safe and effective ART is a cornerstone in the global struggle against the acquired immunodeficiency syndrome. Variable responses to ART are due at least in part to human genetic variants that affect drug metabolism, drug disposition, and off-site drug targets. Defining effects of human genetic variants on HIV treatment toxicity, efficacy, and pharmacokinetics has far-reaching implications. In 2010, the National Institute of Allergy and Infectious Diseases sponsored a workshop entitled, Pharmacogenomics A Path Towards Personalized HIV Care. This article summarizes workshop objectives, presentations, discussions, and recommendations derived from this meeting.

Mandatory infectious diseases consultation for MRSA bacteremia is associated with reduced mortality.

OBJECTIVES: Although infectious disease (ID) consultation has been associated with lower mortality in Staphylococcus aureus bloodstream infections, it is still not mandatory in many centers. This study aimed at assessing the impact of ID consultation on diagnostic and therapeutic management of methicillin-resistant S. aureus (MRSA) bacteremia. METHODS: Retrospective cohort study of all patients with MRSA bacteremia from 2001 to 2010. ID consultations were obtained on request between 2001 and 2006 and became mandatory since 2007. RESULTS: 156 episodes of MRSA bacteremia were included, mostly from central venous catheter (32%) and skin and soft tissue (19%) infections. ID consultation coverage was 58% between 2001 and 2006 and 91% between 2007 and 2010. ID consultation was associated with more echocardiography (59% vs. 26%, p < 0.01), vancomycin trough level measurements (99% vs. 77%, p < 0.01), follow-up blood cultures (71% vs. 50%, p = 0.05), deep-seated infections (43% vs. 16%, p < 0.01), more frequent infection source control (83% vs. 57%, p = 0.03), a longer duration of MRSA-active therapy (median and IQR: 17 days, 13-30, vs. 12, 3-14, p < 0.01) and a 20% reduction in 7-day, 30-day and in-hospital mortality. CONCLUSIONS: ID consultation was associated with a better management of patients with MRSA bacteremia and a reduced mortality.

A research capacity strengthening project for infectious diseases in Honduras: experience and lessons learned

Background: In Honduras, research capacity strengthening (RCS) has not received sufficient attention, but an increase in research competencies would enable local scientists to advance knowledge and contribute to national priorities, including the Millennium Development Goals (MDGs). Objective: This project aimed at strengthening research capacity in infectious diseases in Honduras, focusing on the School of Microbiology of the National Autonomous University of Honduras (UNAH). The primary objective was the creation of a research-based graduate program for the continued training of researchers. Parallel objectives included institutional strengthening and the facilitation of partnerships and networks. Methods: Based on a multi-stakeholder consultation, an RCS workplan was designed and undertaken from 2007 to 2012. Due to unexpected adverse circumstances, the first 2 years were heavily dedicated to implementing the project's flagship, an MSc program in infectious and zoonotic diseases (MEIZ). In addition, infrastructure improvements and demand-driven continuing education opportunities were facilitated; biosafety and research ethics knowledge and practices were enhanced, and networks fostering collaborative work were created or expanded. Results: The project coincided with the peak of UNAH's radical administrative reform and an unprecedented constitutional crisis. Challenges notwithstanding, in September 2009, MEIZ admitted the first cohort of students, all of whom undertook MDG-related projects graduating successfully by 2012. Importantly, MEIZ has been helpful in expanding the School of Microbiology's traditional etiology-based, disciplinary model to infectious disease teaching and research. By fulfilling its objectives, the project contributed to a stronger research culture upholding safety and ethical values at the university. Conclusions: The resources and strategic vision afforded by the project enhanced UNAH's overall research capacity and its potential contribution to the MDGs. Furthermore, increased research activity and the ensuing improvement in performance indicators at the prime Honduran research institution invoke the need for a national research system in Honduras.

Aglutinación de microvesículas eritrocitarias por autoanticuerpos de pacientes con anemia hemolítica autoinmune como un evento independiente del citoesqueleto

Tesis (Doctorado en Medicina) UANL

Facteurs d’agrégation de l’anémie dans les ménages au Cameroun.

L'agrégation de l’anémie dans un ménage est soulignée lorsque l’anémie touche l’ensemble du ménage. La littérature scientifique fait état d’une coexistence des facteurs nutritionnels et infectieux dans l’étiologie de l’anémie. Cependant, si la cause principale de l’anémie dans une population est la carence en fer, les enfants et les femmes seront beaucoup plus affectés que les hommes. Si par contre l’anémie est liée à une cause infectieuse qui touche toute la population, l’anémie atteindra également les hommes. Ce travail a été entrepris pour vérifier l’hypothèse selon laquelle l’anémie ne serait pas spécifique à la carence en fer dans le cas où elle se concentrerait à l’ensemble du ménage. Cette étude porte sur des données d’enquête collectées au Cameroun. Nos analyses sont basées sur un sous échantillon de 2331 sujets, dont 777 femmes, 777 hommes et 777 enfants. La prévalence de l’anémie était de 53,5% chez les enfants, 39,5% chez les femmes et 18,3% chez les hommes. L’anémie était concentrée dans 34% des ménages. Le programme SPSS version 17.0 et plus particulièrement l’analyse de régression logistique a servi à tester l’impact de chaque groupe de variables (facteurs liés à l’individu, au ménage et à la communauté) sur l’agrégation de l’anémie dans les ménages. Les résultats de cette étude suggèrent que l’agrégation de l’anémie s’observerait surtout quand la santé de l’enfant est compromise. Le risque d’agrégation y est 4 fois plus élevé dans les foyers où les enfants ont un déficit pondéral et 6 fois plus élevé dans les ménages où les enfants présentent une fièvre. Le fait d’appartenir au sud forestier et à un ménage de niveau socio-économique moyen constituerait également des facteurs de risque d’agrégation.

Expression of cyclooxygenase isoforms in equine gastric ulcers

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal.

Immune potential and differentiation of equine induced pluripotent stem cells (eiPSC)

Induced pluripotent stem cells (iPSC) have the capacity to self renew and differentiate into a myriad of cell types making them potential candidates for cell therapy and regenerative medicine. The goal of this thesis was to determine the characteristics of equine iPSC (eiPSC) that can be harnessed for potential use in veterinary regenerative medicine. Trauma to a horse’s limb often leads to the development of a chronic non-healing wound that lacks a keratinocyte cover, vital to healing. Thus, the overall hypothesis of this thesis was that eiPSC might offer a solution for providing wound coverage for such problematic wounds. Prior to considering eiPSC for clinical applications, their immunogenicity must be studied to ensure that the transplanted cells will be accepted and integrate into host tissues. The first objective of this thesis was to determine the immune response to eiPSC. To investigate the immunogenicity of eiPSC, the expression of major histocompatibility complex (MHC) molecules by the selected lines was determined, then the cells were used in an intradermal transplantation model developed for this study. While transplantation of allogeneic, undifferentiated eiPSC elicited a moderate cellular response in experimental horses, it did not cause acute rejection. This strategy enabled the selection of weakly immunogenic eiPSC lines for subsequent differentiation into lineages of therapeutic importance. Equine iPSC offer a potential solution to deficient epithelial coverage by providing a keratinocyte graft with the ability to differentiate into other accessory structures of the epidermis. The second objective of this thesis was to develop a protocol for the differentiation of eiPSC into a keratinocyte lineage. The protocol was shown to be highly efficient at inducing the anticipated phenotype within 30 days. Indeed, the eiPSC derived vi keratinocytes (eiPSC-KC) showed both morphologic and functional characteristics of primary equine keratinocytes (PEK). Moreover, the proliferative capacity of eiPSC-KC was superior while the migratory capacity, measured as the ability to epithelialize in vitro wounds, was comparable to that of PEK, suggesting exciting potential for grafting onto in vivo wound models. In conclusion, equine iPSC-derived keratinocytes exhibit features that are promising to the development of a stem cell-based skin construct with the potential to fully regenerate lost or damaged skin in horses. However, since eiPSC do not fully escape immune surveillance despite low MHC expression, strategies to improve engraftment of iPSC derivatives must be pursued.

Relación de la anemia con el estado nutricional y factores determinantes en gestantes de Colombia, 2005

La gestación es una etapa de cambios fisiológicos y metabólicos que buscan asegurar el normal crecimiento materno-fetal. Sin embargo se pueden presentar durante este periodo, toda una variedad de problemas tanto para la madre como para el feto. La anemia es una de las enfermedades más frecuentes y de mayor impacto durante la gestación. Es de destacar también la importancia del estado nutricional de la gestante y su relación con los resultados adversos del embarazo. Es limitado el conocimiento existente acerca de la relación del estado nutricional de las gestantes con la presencia de anemia en el embarazo. A nivel de Latinoamérica son limitados los estudios al respecto y los existentes, por sus características metodológicas y muéstrales, hacen difícil su extrapolación a nuestra población. Objetivo: Determinar la relación existente entre el estado nutricional según el índice de masa corporal y factores determinantes en la presencia de anemia en mujeres gestantes basadas en los datos de la ENSIN 2005. Metodología: se llevo a cabo un estudio observacional de prevalencia analítica, con base en los datos recogidos por la ENSIN 2005, encuesta realizada por Profamilia en el periodo comprendido entre el 25 de octubre de 2004 y el 15 de julio de 2005. Resultados: se logro establecer asociación significativa con algunos factores determinantes tales como el trimestre de gestación en anemia según hemoglobina (mayor riesgo en el 2do trimestre OR: 0,53; IC95% 0,32-0,86; p: 0,0104) y factores de tipo socio demográficos (región de residencia y estado civil). Conclusiones: Resaltamos la importancia de indagar más a fondo acerca de los determinantes sociales y su relación con el desarrollo de anemia y consideramos es necesario diseñar políticas orientadas a la mejora del estado nutricional de la población, mereciendo principal atención las mujeres embarazadas.

Factores de riesgo para anemia, ferropenia y déficit de vitamina a en niños, Encuesta Nacional de la Situación Nutricional (ENSIN) Colombia 2005

Introducción: Más de 2.000 millones de personas están anémicas (1;2). 48% de los niños colombianos tienen ferropenia y 5,9% déficit de vitamina A (DVA)(3). Esto constituye un problema de salud pública de proporciones epidémicas con repercusión en términos de enfermedad, muerte y pérdida del ingreso (4;5;6). Objetivo: Identificar factores asociados a anemia, ferropenia y DVA en niños colombianos según la ENSIN 2005 Metodología: analizando la base de datos ENSIN 2005 para niños entre 1 y 14 años, de las diferentes variables demográficas, seguridad alimentaria y hábitos alimenticios con los niveles de hemoglobina, ferritina y vitamina A. Resultados: encontramos anemia en 31,43%, media de hemoglobina: 12,04 g/dl (IC95%: 12,01 – 12,06); ferropenia en 36,7%, media de ferritina: 33.73 mcg/l (IC95%: 33,27 – 34,17); y DVA en 5,57%, nivel medio de 38,18 mcg/dl (IC 95%:37,81 – 38,56). La mitad son pobres y tienen inseguridad alimentaria. Como factores de riesgo consistentes de anemia y DVA se encontraron: Vivir en las Costa Atlántica o Pacífica, área rural, pobreza, inseguridad alimentaria, nivel educativo del cuidador, no asistir al programa de crecimiento y desarrollo, bajo consumo de frutas, verduras, derivados lácteos, carnes o huevo (p<0,05). El riesgo de ferropenia disminuye por vivir en área urbana o por el consumo de huevo (p<0,05). Conclusiones: se requiere de intervención multisectorial para enfrentar los graves problemas que llevan a que los índices de anemia, ferropenia y déficit de vitamina A sean tan altos en nuestros niños; los cuales son inaceptablemente altos como: inseguridad alimentaria, pobreza, bajo nivel educativo y bajo consumo de alimentos nutritivos.

Relación de la anemia con el estado nutricional y factores determinantes en gestantes de Colombia, 2005

La gestación es una etapa de cambios fisiológicos y metabólicos que buscan asegurar el normal crecimiento materno-fetal. Sin embargo se pueden presentar durante este periodo, toda una variedad de problemas tanto para la madre como para el feto. La anemia es una de las enfermedades más frecuentes y de mayor impacto durante la gestación. Es de destacar también la importancia del estado nutricional de la gestante y su relación con los resultados adversos del embarazo. Es limitado el conocimiento existente acerca de la relación del estado nutricional de las gestantes con la presencia de anemia en el embarazo. A nivel de Latinoamérica son limitados los estudios al respecto y los existentes, por sus características metodológicas y muéstrales, hacen difícil su extrapolación a nuestra población. Objetivo: determinar la relación existente entre el estado nutricional según el índice de masa corporal y factores determinantes en la presencia de anemia en mujeres gestantes basadas en los datos de la ENSIN 2005. Metodología: se llevo a cabo un estudio observacional de prevalencia analítica, con base en los datos recogidos por la ENSIN 2005, encuesta realizada por Profamilia en el periodo comprendido entre el 25 de octubre de 2004 y el 15 de julio de 2005. Resultados: se logro establecer asociación significativa con algunos factores determinantes tales como el trimestre de gestación en anemia según hemoglobina (mayor riesgo en el 2do trimestre OR: 0,53; IC95% 0,32-0,86; p: 0,0104) y factores de tipo socio demográficos (región de residencia y estado civil). Conclusiones: resaltamos la importancia de indagar más a fondo acerca de los determinantes sociales y su relación con el desarrollo de anemia y consideramos es necesario diseñar políticas orientadas a la mejora del estado nutricional de la población, mereciendo principal atención las mujeres embarazadas.