Increased blooms of a dinoflagellate in the NW Atlantic

Sampling by the Continuous Plankton Recorder (CPR) over the NW Atlantic from 1960 to 2000 has enabled long-term studies of the larger components of the phytoplankton community, highlighting various changes, particularly during the 1990s. Analysis of an index of phytoplankton biomass, the Phytoplankton Colour Index (PCI) has revealed an increase over the past decade, most marked during the winter (December to February) months. Examination of the structure of the community using multiple linear-regression models indicates that the winter phytoplankton community composition has changed markedly in the 1990s compared to the 1960s. One phytoplankter, the dinoflagellate Ceratium arcticum (Cleve), has undergone dramatic changes in abundance during this period, with pronounced large winter blooms and decreased autumnal levels, and its contribution to the Phytoplankton Colour index values has increased significantly. Other dominant species in the phytoplankton community, both diatoms and dinoflagellates, did not show the same variations over the examined time period. It is suggested that the response of C. arcticum is probably a result of previously reported changes in stratification in the NW Atlantic, due to dynamic hydro-climatic (freshening and cooling) events.

Continuous Plankton Records - Geographical Variations In Numerical Abundance Biomass And Production Of Euphausiids In The North-Atlantic Ocean And The North-Sea

Geographical variations in the numbers, biomass and production of euphausiids and the contribution of common species to the total are described from samples taken during 1966 and 1967 in the North Atlantic Ocean and the North Sea by the Continuous Plankton Recorder at 10 m depth. Euphausiids were most abundant in the central and western North Atlantic Ocean and the Norwegian Sea. Thysanoessa longicaudata (Krøyer) was numerically dominant. Biomass was greatest in the Norwegian Sea and the north-eastern North Sea where Meganyctiphanes norvegica (M. Sars) accounted for 81 and 59%, respectively, of the total biomass. Production was highest off Nova Scotia and in Iberian coastal waters; the dominant species were T. raschi (M. Sars) in the former area and Nyctiphanes couchi (Bell) in the latter. The mean P:B ratios were correlated with temperature.

Long-term variability and environmental preferences of calycophoran siphonophores in the Bay of Villefranche (North-Western Mediterranean)

Long-term variability of the main calycophoran siphonophores was investigated between 1974 and 1999 in a coastal station in the north-western Mediterranean. The data were collected at weekly frequency using a macroplankton net (680 μm mesh size) adapted to quantitatively sample delicate gelatinous plankton. A 3-year collection (1967–1969) of siphonophores from offshore waters using the same methodology showed that the patterns of variability observed inshore were representative of siphonophores’ changes at a regional scale. The aims of the study were: (i) to investigate the patterns of variability that characterised the dominant calycophoran species and assemblages; (ii) to identify the environmental optima that were associated with a significant increase in the dominant siphonophore species and (iii) to verify the influence of hydroclimatic variability on long-term changes of siphonophores. Our results showed that during nearly 3 decades the standing stock of calycophoran siphonophores did not show any significant change, with the annual maximum usually recorded in spring as a result of high densities of the dominant species Lensia subtilis, Muggiaea kochi and Muggiaea atlantica. Nevertheless, major changes in community composition occurred within the calycophoran population. Since the middle 1980s, M. kochi, once the most dominant species, started to decrease allowing other species, the congeneric M. atlantica and Chelophyes appendiculata, to increasingly dominate in spring and summer–autumn, respectively. The comparison of environmental and biotic long-term trends suggests that the decrease of M. kochi was triggered by hydrological changes that occurred in the north-western Mediterranean under the forcing of large-scale climate oscillations. Salinity, water stratification and water temperature were the main hydroclimatic factors associated with a significant increase of siphonophores, different species showing different environmental preferences.

Satellite discrimination of Karenia mikimotoi and Phaeocystis harmful algal blooms in European coastal waters: Merged classification of ocean colour data

The detection of dense harmful algal blooms (HABs) by satellite remote sensing is usually based on analysis of chlorophyll-a as a proxy. However, this approach does not provide information about the potential harm of bloom, nor can it identify the dominant species. The developed HAB risk classification method employs a fully automatic data-driven approach to identify key characteristics of water leaving radiances and derived quantities, and to classify pixels into “harmful”, “non-harmful” and “no bloom” categories using Linear Discriminant Analysis (LDA). Discrimination accuracy is increased through the use of spectral ratios of water leaving radiances, absorption and backscattering. To reduce the false alarm rate the data that cannot be reliably classified are automatically labelled as “unknown”. This method can be trained on different HAB species or extended to new sensors and then applied to generate independent HAB risk maps; these can be fused with other sensors to fill gaps or improve spatial or temporal resolution. The HAB discrimination technique has obtained accurate results on MODIS and MERIS data, correctly identifying 89% of Phaeocystis globosa HABs in the southern North Sea and 88% of Karenia mikimotoi blooms in the Western English Channel. A linear transformation of the ocean colour discriminants is used to estimate harmful cell counts, demonstrating greater accuracy than if based on chlorophyll-a; this will facilitate its integration into a HAB early warning system operating in the southern North Sea.

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related(1). These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity (Fig. 1). We report the 214 million base pair (Mbp) genome sequence of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for brown algae(2-5), closely related to the kelps(6,7) (Fig. 1). Genome features such as the presence of an extended set of light-harvesting and pigment biosynthesis genes and new metabolic processes such as halide metabolism help explain the ability of this organism to cope with the highly variable tidal environment. The evolution of multicellularity in this lineage is correlated with the presence of a rich array of signal transduction genes. Of particular interest is the presence of a family of receptor kinases, as the independent evolution of related molecules has been linked with the emergence of multicellularity in both the animal and green plant lineages. The Ectocarpus genome sequence represents an important step towards developing this organism as a model species, providing the possibility to combine genomic and genetic(2) approaches to explore these and other(4,5) aspects of brown algal biology further.

THE IMPACT OF BURNING AND GRAZING OF HEATHLAND PLANTS AND INVERTEBRATES IN COUNTRY ANTRIM

The impact of burning and grazing on plant, ground beetle and spider species was investigated experimentally in stands of varying ages (burnt in 1982 and 1988 and unburnt plots) on an area of heather moorland in County Antrim, north-east Ireland. Burning initiated complex succession pathways which appear to have characteristic plant and invertebrate species associations. Removal of Calluna dominance initiated a period of high plant species diversity. Investigation of initial post-fire regeneration suggested that the frequency of occurrence of plant species changed over time and was affected by grazing. Grouping of species by the position of their renewal bud, i.e. their life-form, did not account for all observed interspecific variation. The dominant species after burning were Eriophorum vaginatum, E. angustifolium and Vaccinium myrtillus. Studies of vegetation canopy structure showed that, even with the exclusion of the main grazing herbivores, Calluna will not re-establish itself as the dominant species until several years after burning. The ground beetle Nebria salina was trapped more often on plots burnt in 1988 than on unburnt plots or those burnt in 1982. In comparison, Pterostichus niger and Carabus granulatus were trapped in greater numbers on plots burnt in 1982 than on unburnt plots and plots burnt in 1988. The large species Carabus problematicus and Carabus glabratus were trapped in greater numbers on unburnt plots. Similarly, more of the spiders Ceratinella brevipes and Centromerita concinna were trapped on the plots burnt in 1982. In comparison, Lepthyphantes zimmermanni and Robertus lividus were trapped more often on unburnt plots than on plots burnt in 1982 and 1988. Results are discussed with respect to the importance of the continuation of traditional heathland management practices.

ABSORPTION AND EMISSION-SPECTRA OF THE YBCO LASER PLUME

The plasma produced during laser ablation deposition of thin film YBCO has been studied by optical emission spectroscopy. There is evidence of increased YO band emission in the range 590-625 nm as the ambient oxygen gas pressure confining the plume is increased in the range 30-200 m Torr. Temporal profiles show that close to the target the plume is insensitive to ambient oxygen pressure. It is deduced that the optical emission here is excited by electron impact excitation. Further away from the target there is evidence that two distinct processes are at work. One is again electron excitation; the emission from this process decreases with distance because the expanding plume cools and collisions become less frequent in the expanding gas. The second is driven by oxidation of atomic species expelled at high speeds from the target. The main region of this activity is in the plume sheath where a shock front ensures heating of ambient O2 and reaction of monatomic plasma species to form oxide in an exothermic reaction. Spatial mapping of the emission demonstrates clearly how increasing oxygen gas pressure confines the plasma and enhances the emission intensity from the molecular YO species ejected from the target in a smaller region close to the target. Ba+ is observed as a dominant species only very close to (within 1 mm of) the target. Absorption spectra have been taken in an attempt to examine ground state and cool species in the plume. They reveal the quite surprising result that YO persists in the chamber for periods up to 1 msec. This suggests an explanation for the recent report of off-axis laser deposition in terms of simple condensation. Previously, quasi-ballistic transfer of material from target to substrate has been considered the only significant process.

Quantitative and qualitative trapping of arsines deployed to assess loss of volatile arsenic from paddy soil

Arsenic volatilization in the environment is thought to be an important pathway for transfer from terrestrial pools to the atmosphere. However, this phenomenon is not well characterized due to inherent sampling issues in trapping, quantifying and qualifying these arsine gases; including arsine (AsH(3)), monomethyl arsine (MeAsH(2)), dimethyl arsine (Me(2)AsH) and trimethyl arsine (TMAs). To quantify and qualify arsines in air we developed a novel technique based on silver nitrate impregnated silica gel filled tubes. The method was characterized by measuring the recovery of trapped arsines after elution of this chemo-trap with hot boiling diluted nitric acid. Results from three separate experiments, measured by ICP-MS, showed that the method is reproducible and quantitative. Arsine species recovery ranged from 80.1 to 95.6%, with limit of detection as low as 3.8 ng per chemo-trap tube. Moreover, HPLC-ICP-MS analysis of hot boiling water eluted traps showed that the corresponding oxy ions of the arsines were formed with the As-C bonds of the molecule intact, hence, allowing qualification of trapped arsine species. A microcosm study examining volatile arsenic evolution from field contaminated Bangladeshi paddy soils (24.2 mg/kg arsenic) was used to show the application of silver nitrate chemo-trapping approach. Traps were placed on the inlet and the outlet of microcosms containing the soils that were either (cattle derived) manured or not, or flooded or not, in a factorial design. The headspace was purged with air at a flow rate of 12 mL/min. Results showed that as much as 320 ng of arsenic (0.014% of total soil content) could be emitted in a 3 week period for manured and flooded soils and that TMAs was the dominant species evolved, with lesser quantities of Me(2)AsH. No volatile arsenic evolution was observed for nonmanured treatments, and arsine release from the nonflooded, manured treatment was much less than the flooded treatment.

Can arsenic-phytochelatin complex formation be used as an indicator for toxicity in Helianthus annuus?

The formation of arsenic-phytochelatin (As-PC) complexes is thought to be part of the plant detoxification strategy for arsenic. This work examines (i) the arsenic (As) concentration-dependent formation of As-PC complex formation and (ii) redistribution and metabolism of As after arrested As uptake in Helianthus annuus. HPLC with parallel ICP-MS/ES-MS detection was used to identify and quantify the species present in plant extracts exposed to arsenate (As(V)) (between 0 and 66.7 micromol As l-1 for 24 h). At As concentrations below the EC50 value for root growth (22 micromol As l-1) As uptake is exponential, but it is reduced at concentrations above. Translocation between root and shoot seemed to be limited to the uptake phase of arsenic. No redistribution of As between root and shoot was observed after arresting As exposure. The formation of As-PC complexes was concentration-dependent. The amount and number of As-PC complexes increased exponentially with concentration up to 13.7 micromol As l-1. As(III)-PC3 and GS-As(III)-PC2 complexes were the dominant species in all samples. The ratio of PC-bound As to unbound As increased up to 1.3 micromol As l-1 and decreased at higher concentrations. Methylation of inorganic As was only a minor pathway in H. annuus with about 1% As methylated over a 32 d period. The concentration dependence of As-PC complex formation, amount of unbound reduced and oxidized PC2, and the relative uptake rate showed that As starts to influence the cellular metabolism of H. annuus negatively at As concentrations well below the EC50 value determined by more traditional means. Generally, As-PC complexes and PC-synthesis rate seem to be the more sensitive parameters to be studied when As toxicity values are to be estimated.

Electrooxidation of methanol in an alkaline fuel cell: determination of the nature of the initial adsorbate

It is essential to correctly determine the nature of the initial adsorbate in order to calculate the pathway for any given reaction. Recent literature provides conflicting information on the first step in the methanol decomposition pathway. This work sets out to establish what role the solution and the surface have to play in the initial adsorption-deprotonation process. Density functional theory (DFT) calculations, in combination with a cluster-continuum model approach are used to resolve the nature of the adsorbing species. We show that methanol is the dominant species in solution over methoxide, and also has a smaller barrier to adsorption. The nature of the surface species is revealed to be a methanol-OH complex.

Sputtering of oxygen ice by low energy ions

Naturally occurring ices lie on both interstellar dust grains and on celestial objects, such as those in the outer Solar system. These ices are continuously subjected to irradiation by ions from the solar wind and/or cosmic rays, which modify their surfaces. As a result, new molecular species may form which can be sputtered off into space or planetary atmospheres. We determined the experimental values of sputtering yields for irradiation of oxygen ice at 10 K by singly (He+, C+, N+, O+ and Ar+) and doubly (C2 +, N2 + and O2 +) charged ions with 4 keV kinetic energy. In these laboratory experiments, oxygen ice was deposited and irradiated by ions in an ultra high vacuum chamber at low temperature to simulate the environment of space. The number of molecules removed by sputtering was observed by measurement of the ice thickness using laser interferometry. Preliminary mass spectra were taken of sputtered species and of molecules formed in the ice by temperature programmed desorption (TPD). We find that the experimental sputtering yields increase approximately linearly with the projectile ion mass (or momentum squared) for all ions studied. No difference was found between the sputtering yields for singly and doubly charged ions of the same atom within the experimental uncertainty, as expected for a process dominated by momentum transfer. The experimental sputter yields are in good agreement with values calculated using a theoretical model except in the case of oxygen ions. Preliminary studies have shown molecular oxygen as the dominant species sputtered and TPD measurements indicate ozone formation.

The extended phenotype of Scots pine Pinus sylvestris structures the understorey assemblage

Heritable variation in plant secondary compounds in dominant species has been hypothesised to effect ecosystem function and the structure of associated assemblages of plants, microbes and animals. The functioning of this extended phenotype in relation to the understorey vegetation composition was tested within a boreal forest system dominated by Pinus sylvestris which contains a range of monoterpenes, the composition of which is largely under genetic control. A variance partitioning approach was adopted to identify the relative importance of tree chemistry, environment, spatial location and tree architecture in controlling the distribution of species in the ground flora under individual trees. The monoterpene composition of the pine needles appeared to contribute significantly to controlling understorey vegetation composition, but was less important than environmental factors, though similar to spatial factors. Thus there appears to be a link between variation in the chemical composition of the single, dominant tree species within this system and the pattern of occurrence and abundance in other species at the same trophic level.

Does chemical composition of individual Scots pine trees determine the biodiversity of their associated ground vegetation?

Despite plant secondary metabolites being major determinants of species interactions and ecosystem processes, their role in the maintenance of biodiversity has received little attention. In order to investigate the relationship between chemical and biological diversity in a natural ecosystem, we considered the impact of chemical diversity in individual Scots pine trees (Pinus sylvestris) on species richness of associated ground vegetation. Scots pine trees show substantial genetically determined constitutive variation between individuals in concentrations of a group of secondary metabolites, the monoterpenes. When the monoterpenes of particular trees were assessed individually, there was no relationship with species richness of associated ground flora. However, the chemical diversity of monoterpenes of individual trees was significantly positively associated with the species richness of the ground vegetation beneath each tree, mainly the result of an effect among the non-woody vascular plants. This correlation suggests that the chemical diversity of the ecosystem dominant species has an important role in shaping the biodiversity of the associated plant community. The extent and significance of this effect, and its underlying processes require further investigation.

Gorgonians of the South of Portugal: biology, ecology and conservation

O papel ecológico das gorgónias (Octocorallia: Alcyonacea) nos fundos marinhos rochosos é mundialmente reconhecido. Contudo, a informação acerca da ecologia e biologia das espécies de gorgónias nas zonas temperadas do NE Atlântico é manifestamente escassa, especialmente tendo em consideração as actuais perturbações globais, regionais e locais. Nos fundos rochosos da costa algarvia até aos 30 m, verificouse que várias espécies de gorgónias são abundantes e frequentes, nomeadamente Eunicella labiata, Eunicella gazella, Eunicella verrucosa, Leptogorgia lusitanica e Leptogorgia sarmentosa. As populações de gorgónias são co-dominadas por diferentes espécies que apresentaram elevados índices de associação, indicando reduzidos níveis de competição entre elas. Em todo o caso, a estrutura dos povoamentos diferiu com as condições locais. Todas as espécies evidenciaram padrões de distribuição semelhantes ao longo do gradiente de profundidade, i.e. a abundância aumenta significamente com a profundidade após os 15 m. A profundidades mais baixas (até aos 15 m), a distribuição das gorgónias parece ser condicionada por factores abióticos e pela competição com algas. Com efeito, os padrões de distribuição espacial das espécies de gorgónias na costa algarvia são determinados pela interacção de pressões naturais e antropogénicas (ex. pesca). Ainda que as colónias de maior tamanho não tenham sido restritas a áreas menos pescadas, em áreas mais perturbadas pela pesca, a distribuição dos tamanhos das colónias estava maioritariamente desviada para tamanhos mais pequenos. Os efeitos das perturbações naturais nas populações de gorgónias foram evidenciados pela ocorrência de padrões demográficos distintos em áreas vizinhas sujeitas a níveis semelhantes de pressões antropogénicas. Estes estudos demonstraram, ainda, que os efeitos na distribuição de frequências de tamanho das colónias são dependentes das espécies de gorgónias em causa: Eunicella labiata não parece ser afectada; Leptogorgia sarmentosa é tendencialmente afectada por pressões antropogénicas; Eunicella gazella e Leptogorgia lusitanica aparentam ser afectadas, quer por pressões naturais, quer por pressões antropogénicas. Os efeitos verificados nos padrões da distribuição de frequências de tamanho, particularmente a tendência para o desvio destas frequências para tamanhos mais pequenos em áreas sujeitas a perturbações, poderão ter consequências para a biodiversidade dos fundos sublitorais rochosos na costa algarvia. Com efeito, o presente estudo apoia o paradigma geral de que os corais são habitats que suportam comunidades de elevada biodiversidade e abundância. Num dos poucos estudos que examinam a relação entre as gorgónias e as suas comunidades de invertebrados epibentónicos, foi verificado que as gorgónias (Eunicella gazella e Leptogorgia lusitanica) sustentam comunidades ricas (11 phyla, 181 taxa) e abundantes (7284 indivíduos). Estas comunidades são dominadas por anfípodes, mas os poliquetas tiveram um grande contributo para os níveis elevados de biodiversidade. Verificou-se, igualmente, que o tamanho da colónia desempenha um papel fundamental na biodiversidade, na medida em que as colónias de menor tamanho apresentaram um contributo mais baixo, comparativamente às médias e grandes. Ainda que ambas as gorgónias partilhem a maioria das espécies amostradas, 11 e 18 taxa foram exclusivos de Eunicella gazella e Leptogorgia lusitanica, respectivamente (excluindo indivíduos com presenças únicas). No entanto, a maioria destes taxa eram ou pouco abundantes ou pouco frequentes. A excepção foi a presença de planárias (Turbellaria) de coloração branca nas colónias de Eunicella gazella, provavelmente beneficiando do efeito de camuflagem proporcionado pelos ramos com a mesma coloração. Com efeito, a complementaridade entre as comunidades epibentónicas associadas a ambas as gorgónias diminuiu quando usados os dados de presença/ausência, sugerindo que os padrões de biodiversidade são mais afectados pelas alterações na abundância relativa das espécies dominantes do que pela composição faunística. As comunidades de epifauna bentónica associadas a estas gorgónias não só apresentaram valores elevados de ®-diversidade, como de ¯- diversidade, resultantes de padrões intrincados de variabilidade na sua composição e estrutura. Ainda que o conjunto de espécies disponíveis para colonização seja, na generalidade, o mesmo para ambos os locais, cada colónia apresenta uma parte deste conjunto. Na sua totalidade, as colónias de gorgónias poderão funcionar como uma metacomunidade, mas a estrutura das comunidades associadas a cada colónia (ex. número total de espécies e abundância) parecem depender dos atributos da colónia, nomeadamente superfície disponível para colonização (altura, largura e área), complexidade e heterogeneidade (dimensão fractal e lacunaridade, respectivamente) e cobertura epibentónica “colonial” (ex. fauna colonial e algas macroscópicas; CEC). Numa primeira tentativa para quantificar a relação entre as gorgónias e os invertebrados epibentónicos a elas associados (em termos de abundância e riqueza específica), verificou-se que a natureza e a intensidade destas relações dependem da espécie hospedeira e variam para os grupos taxonómicos principais. No entanto, independentemente do grupo taxonómico, a riqueza específica e a abundância estão significativamente correlacionadas com a CEC. Com efeito, a CEC provavelmente devido a um efeito trófico (aumento da disponibilidade alimentar directo ou indirecto), combinado com a superfície disponível para colonização (efeito espécies-área) foram as variáveis mais relacionadas com os padrões de abundância e riqueza específica. Por outro lado, ainda que a complexidade estrutural seja frequentemente indicada como um dos factores responsáveis pela elevada diversidade e abundância das comunidades bentónicas associadas a corais, a dimensão fractal e a lacunaridade apenas foram relevantes nas comunidades associadas a Leptogorgia lusitanica. A validade do paradigma que defende que a complexidade estrutural promove a biodiversidade poderá ser, então, dependente da escala a que se realizam os estudos. No caso das gorgónias, o efeito da complexidade ao nível dos agregados de gorgónias poderá ser muito mais relevante do que ao nível da colónia individual, reforçando a importância da sua conservação como um todo, por forma a preservar a diversidade de espécies hospedeiras, o seu tamanho e estrutura. Actividades antropogénicas como a pesca, podem, ainda, ter efeitos negativos ao nível da reprodução de espécies marinhas. Analogamente ao verificado para os padrões de distribuição espacial das populações de gorgónias na costa algarvia, a informação relativa à sua reprodução é igualmente escassa. Os estudos realizados em populações de Eunicella gazella a 16m de profundidade, demonstraram que o desenvolvimento anual das estruturas reprodutivas é altamente sincronizado entre os sexos. A razão entre sexos na população foi de 1.09 (F:M), encontrando-se perto da paridade. A espermatogénese estende-se por 6 a 8 meses, enquanto que a oogénese é mais demorada, levando mais de um ano para que os oócitos se desenvolvam até estarem maduros. Antes da libertação dos gâmetas, foi observada uma elevada fecundidade nas fêmeas (27.30§13.24 oócitos pólipo−1) e nos machos (49.30§31.14 sacos espermáticos pólipo−1). Estes valores encontram-se entre os mais elevados reportados à data para zonas temperadas. A libertação dos gâmetas (não há evidência de desenvolvimento larvar, nem à superfície da colónia, nem no seu interior) occorre em Setembro/ Outubro, após um período de elevada temperatura da água do mar. As fêmeas emitem oócitos maduros de elevadas dimensões, retendo, todavia, os oócitos imaturos que se desenvolvem apenas na época seguinte. Ainda que o efeito da pesca nas populações de gorgónias da costa do Algarve seja perceptível, às taxas actuais, o mergulho recreativo não aparenta afectar seriamente estas populações. Contudo, sendo uma indústria em expansão e conhecendo-se a preferência de mergulhadores por áreas rochosas naturais ricas em espécies bentónicas, futuramente poderá vir a afectar estes habitats. A monitorização de mergulhadores na costa algarvia mostrou que a sua maioria (88.6 %) apresenta comportamentos que podem impactar o habitat, com uma taxa média de contactos de 0.340§0.028 contactos min−1. Esta taxa foi mais elevada em mergulhadores com moderada experiência e na fase inicial do mergulho (0–10 min). Os contactos com as barbatanas e mãos foram comuns, resultando, maioritariamente, na resuspensão do sedimento, mas geralmente apresentando um impacto reduzido. Todavia, a fauna também foi afectada, quer por danos físicos, quer pela interacção com os mergulhadores, e num cenário de expansão significativa desta actividade, os impactos na fauna local poderão aumentar, com consequências para os ecossistemas de fundos rochosos da costa sul de Portugal. Na sua globalidade, a informação recolhida nos estudos que contemplam esta tese, por ser em grande parte totalmente nova para a região, espera-se que contribua para a gestão da zona costeira do Algarve.

Ecological quality assessment in transitional systems

Estuaries are poles of attraction for human settlement which is a source of pressures to surface water bodies. The implementation of the European Water Framework Directive (WDF, 2000/60/EC) has increased the investigation in order to develop methodologies to assess the Ecological Quality Status (EQS) of aquatic ecosystems. Transitional systems are naturally stressed and characterized by highly dynamic physical, chemical and hydro-morphologic conditions and by species with a higher level of tolerance to change, being more difficult to develop suitable quality indicators for these systems. The general purpose of this study is to test the ability of synthesis descriptors, including primary (S, taxa richness) and derived biological variable (H’, Shannon-Wiener diversity), biotic indices (AMBI and M-AMBI), body size properties (abundance distribution by body size classes, length, weight and length-weight relationships) and non-taxonomic indices (ISS), as well as functional indicators related to the decomposition rates of various experimental substrates, a macrophyte (Phragmites australis) and an alga (Fucus vesiculosus), to evaluate the environmental quality in transitional systems. This study was carried out in one of the most pristine channels of the Ria the Aveiro, Mira Channel, along a full salinity gradient and in a metals and metalloid sediment contamination area, the Estarreja Channel, and two reference channels (Canelas and Salreu). In this study were used different sampling techniques, the leaf-bag technique and a hand-held corer. In Mira Channel, the alga and the macrophyte presented an opposite trend in the decomposition rate along the salinity gradient, with the decomposition rates of the alga always higher than those of the macrophyte. The decomposition rates of the macrophyte and the alga were higher in the mid estuary and in higher salinity areas, respectively, corresponding to the preferencial distribution areas of each species. The macrobenthic fauna associated with the decaying and an artificial substrate (control) showed equally well the benthic succession from the marine to the freshwater areas and, despite the strong differences in the decay rates, no significant differences were found between the benthic communities associated with the alga and the macrophyte. The body size properties of the macrobenthic fauna associated with the P. australis leaf-bag (1mm and 5mm) and corer samples were studied along the full salinity gradient. The dominant species of the sub-set of measured specimens were not the same of the original macrobenthic fauna sampled but, despite that, the sub-set of measured specimens was also able to show the benthic succession from the marine to the freshwater areas. The body size abundance distribution of the benthic macroinvertebrates according to the ISS size classes did not show a particular trend in any sampler along the salinity gradient. Significant differences were found in the length, weight and length-weight relationships of Annelids, , Molluscs and even some species along the salinity gradient. No significant differences were found in the AMBI, M-AMBI and ISS values along the salinity gradient for all the samplers. The EQS of the corer samples obtained using the M-AMBI was lower than that of the leaf-bags. The EQS obtained with the ISS was higher than that obtained with the M-AMBI in the leaf-bags but not in the corer samples. The ecological effects of contaminated sediments associated with the industrial chemical effluents discharged in the Estarreja Channel were studied a decade after ceasing the emissions, using the Sediment Quality Triad approach and two reference channels. The results showed that despite the emissions ceased in 2004, the sediment remains polluted with high levels of metals and metalloid, available to bioaccumulation and with severe consequences at the community level. The sediment contamination problem was also studied using the leaf-bag technique with a macrophyte, an alga and a control substrate. The results showed that the decay rates, the associated macrofauna and the application of the AMBI, M-AMBI and ISS indices to the mesh-bag samples were not able to identify the sediment contamination. Contrarily to the AMBI, the M-AMBI and the ISS showed significant differences between the contaminated and the reference channels for the corer samples. Although such statistical significance, the interest of using these complex biotic indices could be questioned, when much simple ones, like the S and H’ allow to reach the same conclusions.