On the relationship between hidden Markov Models and convex functional transforms for simulating scanning probe Microscopy

Models for simulating Scanning Probe Microscopy (SPM) may serve as a reference point for validating experimental data and practice. Generally, simulations use a microscopic model of the sample-probe interaction based on a first-principles approach, or a geometric model of macroscopic distortions due to the probe geometry. Examples of the latter include use of neural networks, the Legendre Transform, and dilation/erosion transforms from mathematical morphology. Dilation and the Legendre Transform fall within a general family of functional transforms, which distort a function by imposing a convex solution.In earlier work, the authors proposed a generalized approach to modeling SPM using a hidden Markov model, wherein both the sample-probe interaction and probe geometry may be taken into account. We present a discussion of the hidden Markov model and its relationship to these convex functional transforms for simulating and restoring SPM images.©2009 SPIE.

Convex approaches to model wavelet sparsity patterns

Statistical dependencies among wavelet coefficients are commonly represented by graphical models such as hidden Markov trees (HMTs). However, in linear inverse problems such as deconvolution, tomography, and compressed sensing, the presence of a sensing or observation matrix produces a linear mixing of the simple Markovian dependency structure. This leads to reconstruction problems that are non-convex optimizations. Past work has dealt with this issue by resorting to greedy or suboptimal iterative reconstruction methods. In this paper, we propose new modeling approaches based on group-sparsity penalties that leads to convex optimizations that can be solved exactly and efficiently. We show that the methods we develop perform significantly better in de-convolution and compressed sensing applications, while being as computationally efficient as standard coefficient-wise approaches such as lasso. © 2011 IEEE.

Polarisation diversity of conformal arrays based on geometric algebra via convex optimisation

A simple and general design procedure is presented for the polarisation diversity of arbitrary conformal arrays; this procedure is based on the mathematical framework of geometric algebra and can be solved optimally using convex optimisation. Aside from being simpler and more direct than other derivations in the literature, this derivation is also entirely general in that it expresses the transformations in terms of rotors in geometric algebra which can easily be formulated for any arbitrary conformal array geometry. Convex optimisation has a number of advantages; solvers are widespread and freely available, the process generally requires a small number of iterations and a wide variety of constraints can be readily incorporated. The study outlines a two-step approach for addressing polarisation diversity in arbitrary conformal arrays: first, the authors obtain the array polarisation patterns using geometric algebra and secondly use a convex optimisation approach to find the optimal weights for the polarisation diversity problem. The versatility of this approach is illustrated via simulations of a 7×10 cylindrical conformal array. © 2012 The Institution of Engineering and Technology.