Terrestrial biosphere changes over the last 120 kyr

A new global synthesis and biomization of long (> 40 kyr) pollen-data records is presented and used with sim- ulations from the HadCM3 and FAMOUS climate models and the BIOME4 vegetation model to analyse the dynamics of the global terrestrial biosphere and carbon storage over the last glacial–interglacial cycle. Simulated biome distribu- tions using BIOME4 driven by HadCM3 and FAMOUS at the global scale over time generally agree well with those in- ferred from pollen data. Global average areas of grassland and dry shrubland, desert, and tundra biomes show large- scale increases during the Last Glacial Maximum, between ca. 64 and 74 ka BP and cool substages of Marine Isotope Stage 5, at the expense of the tropical forest, warm-temperate forest, and temperate forest biomes. These changes are re- flected in BIOME4 simulations of global net primary pro- ductivity, showing good agreement between the two models. Such changes are likely to affect terrestrial carbon storage, which in turn influences the stable carbon isotopic composi- tion of seawater as terrestrial carbon is depleted in 13C.

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison

The slow-growing genus Bradyrhizobium is biologically important in soils, with different representatives found to perform a range of biochemical functions including photosynthesis, induction of root nodules and symbiotic nitrogen fixation and denitrification. Consequently, the role of the genus in soil ecology and biogeochemical transformations is of agricultural and environmental significance. Some isolates of Bradyrhizobium have been shown to be non-symbiotic and do not possess the ability to form nodules. Here we present the genome and gene annotations of two such free-living Bradyrhizobium isolates, named G22 and BF49, from soils with differing long-term management regimes (grassland and bare fallow respectively) in addition to carbon metabolism analysis. These Bradyrhizobium isolates are the first to be isolated and sequenced from European soil and are the first free-living Bradyrhizobium isolates, lacking both nodulation and nitrogen fixation genes, to have their genomes sequenced and assembled from cultured samples. The G22 and BF49 genomes are distinctly different with respect to size and number of genes; the grassland isolate also contains a plasmid. There are also a number of functional differences between these isolates and other published genomes, suggesting that this ubiquitous genus is extremely heterogeneous and has roles within the community not including symbiotic nitrogen fixation.

Wheat seed embryo excision enables the creation of axenic seedlings and Koch’s postulates testing of putative bacterial endophytes

Early establishment of endophytes can play a role in pathogen suppression and improve seedling development. One route for establishment of endophytes in seedlings is transmission of bacteria from the parent plant to the seedling via the seed. In wheat seeds, it is not clear whether this transmission route exists, and the identities and location of bacteria within wheat seeds are unknown. We identified bacteria in the wheat (Triticum aestivum) cv. Hereward seed environment using embryo excision to determine the location of the bacterial load. Axenic wheat seedlings obtained with this method were subsequently used to screen a putative endophyte bacterial isolate library for endophytic competency. This absence of bacteria recovered from seeds indicated low bacterial abundance and/or the presence of inhibitors. Diversity of readily culturable bacteria in seeds was low with 8 genera identified, dominated by Erwinia and Paenibacillus. We propose that anatomical restrictions in wheat limit embryo associated vertical transmission, and that bacterial load is carried in the seed coat, crease tissue and endosperm. This finding facilitates the creation of axenic wheat plants to test competency of putative endophytes and also provides a platform for endophyte competition, plant growth, and gene expression studies without an indigenous bacterial background.

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian (marsupial or monotreme) genomes. Cattle-specific evolutionary breakpoint regions in chromosomes have a higher density of segmental duplications, enrichment of repetitive elements, and species-specific variations in genes associated with lactation and immune responsiveness. Genes involved in metabolism are generally highly conserved, although five metabolic genes are deleted or extensively diverged from their human orthologs. The cattle genome sequence thus provides a resource for understanding mammalian evolution and accelerating livestock genetic improvement for milk and meat production.

Biossegurança e odontologia: crenças e atitudes de graduandos sobre o controle da infecção cruzada

Este estudo teve o objetivo de investigar as percepções de graduandos de Odontologia sobre a fidelidade às diretrizes de biossegurança e acerca do preservar-se. Nove questões abertas, que abordaram aspectos de interesse para o tema, foram aplicadas em entrevista com 14 acadêmicos, que realizavam atendimento odontológico de pacientes da Faculdade de Odontologia de Araraquara da Unesp. Utilizou-se a metodologia de pesquisa qualitativa e a estratégia metodológica para análise das entrevistas foi a Discurso do Sujeito Coletivo (DSC). Três figuras metodológicas foram obtidas, sendo ideias-centrais, expressões-chave e o DSC propriamente dito. A análise dos discursos permitiu avaliar a fala natural da coletividade. Verificou-se a adesão dos entrevistados aos protocolos de biossegurança, embora houvesse a queixa de que, na rotina diária, as precauções fossem negligenciadas por não serem muito práticas. Entre as medidas de proteção individual e coletiva, rotineiramente utilizadas, foram apontados o uso de Equipamento de Proteção Individual (EPI) e as barreiras protetoras, bem como as atividades de desinfecção e esterilização. O risco de contágio foi visto por alguns com pavor e por outros com total indiferença porque acreditavam ser algo do qual é possível de se ter controle por meio da adesão às precauções padrão. Entre as doenças de maior preocupação, a aids e as hepatites B e C foram as mais temidas. Diante do discurso obtido, salienta-se a necessidade de se aperfeiçoar as estratégias educacionais, com intuito de motivar a fiel adesão às normas de biossegurança, essenciais no trato de pacientes odontológicos.

A first generation whole genome RH map of the river buffalo with comparison to domestic cattle

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Two new genera of neotropical Chrysopini (Neuroptera : Chrysopidae)

Two new genera and two new spec ies of Chrysopini (Neuroptera: Chrysopidae) are described from Brazil. The main characteristics of Cryptochrysa chloros are: a sheath of long setae in the oral cavity; slender forewing; triangular intramedian cell; antennal scape longer than wide; and lines of strong setae ventral to the arcessus. Characteristics of Furcochrysa allata are: large gonocornua; presence of a pseudopenis; arcessus absent; and basal marginal vein of forewing forked.

The contribution of transposable elements to Bos taurus gene structure

In an effort to identify the contribution of TEs to bovine genome evolution, the abundance, distribution and insertional orientation of TEs were examined in all bovine nuclear genes identified in sequence build 2.1 (released October 11, 2005). Exons, introns and promoter segments (3 kb upstream the transcription initiation sites) were screened with the RepeatMasker program. Most of the genes analyzed contained TE insertions, with an average of 18 insertions/gene. The majority of TE insertions identified were classified as retrotransposons and the remainder classified as DNA transposons. TEs were inserted into exons and promoter segments infrequently, while insertion into intron sequences was strikingly more abundant. The contribution of TEs to exon sequence is of great interest because TE insertions can directly influence the phenotype by altering protein sequences. We report six cases where the entire exon sequences of bovine genes are apparently derived from TEs and one of them, the insertion of Charlie into a bovine transcript similar to the zinc finger 452 gene is analyzed in detail. The great similarity of the TE-cassette sequence to the ZNF452 protein and phylogenetic relationship strongly suggests the occurrence of Charlie 10 DNA exaptation in the mammalian zinc finger 452 gene. (c) 2006 Published by Elsevier B.V.

Sexual dimorphism in Ceraeochrysa cubana (Neuroptera : Chrysopidae)

Sexual dimorphism of green lacewings is discussed, citing previously known examples of this structural phenomenon on the frons, antennal scape, and forewings. Newly recognized dimorphism is cited in Ceraeochrysa cubana for the vertex and abdominal spiracles.

New Neotropical species of Ceraeochrysa Adams (Neuroptera: Chrysopidae)

Species of Ceraeochrysa Adams are distributed from southeast Canada to Argentina. Larvae feed on aphids, thrips, white flies, mites, and neonatal larvae of Lepidoptera in varied agroecosystems. Seven species are known in Venezuela, viz. Ceraeochrysa achillea Freitas & Penny, C. angulata (Navas), C. bitacornua Freitas & Penny, C. caligata (Banks), C. cubana (Hagen), C. everes (Banks), and C. valida (Banks). In this study, three species are described as new to science, Ceraeochrysa melaenopareia sp. nov., Ceraeochrysa pittieri sp. nov., and Ceraeochrysa torresi sp. nov.

A new synonym, a new male description and new geographical records for three Ceraeochrysa species (Neuroptera: Chrysopidae)

Ceraeochrysa Adams is the largest genus in Chrysopini with 62 valid species distributed in the New World. The taxonomy of this group is complex and largely based on male genitalic characters. There are still serious complications, especially with the species that have been described solely from female specimens. The male of C. montoyana (Navas, 1913), unknown previously, is herein described for the first time, and compared with its closest relative, C. claveri (Navas, 1911). Ceraeochrysa acutipuppis Adams & Penny, 1985 is designated as a junior synonym of C. fairchildi (Banks, 1946) based on the evidence that both species share external morphological features uncommon in other species of the genus. The species C. claveri, C. fairchildi and C. montoyana are recorded from Venezuela for the first time. External morphology and genitalia of these insects are described and illustrated.

A new genus of Neotropical Chrysopini (Neuroptera: Chrysopidae)

Titanochrysa Sosa & Freitas is a new genus of Neotropical Chrysopini (Chrysopidae: Chrysopinae) recorded from Costa Rica, Venezuela and Brazil. Titanochrysa gen. nov. shares several external and genitalic characters with Ceraeochrysa Adams, 1982; Chrysopodes Navas, 1913; Cryptochrysa Freitas & Penny, 2000; Parachrysopiella Brooks & Barnard, 1990 and Ungla Navas 1914. It may be distinguished from those genera by its very long sternite 8+9, sternites 2-8 usually with microtholi, male genitalia with the dorsal surface of the arcessus striated, gonosaccus well-developed, bearing elongate gonosetae and microsetae, and a spoon-like gonapsis. Herein, Titanochrysa circumfusa (Burmeister, 1939) [= Chrysopodes circumfusa (Burmeister)] comb. nov. and Titanochrysa pseudovaricosa (Penny) [= Ceraeochrysa pseudovaricosa Penny, 1998] comb. nov. were identified; Titanochrysa ferreirai Sosa & Freitas sp. nov. and Titanochrysa trespuntensis Sosa & Freitas sp. nov. were described. The external morphology, and male and female genitalia of all these species are described. Titanochrysa circumfusa (Burmeister, 1939) comb. nov. is recorded for the first time from Venezuela.

A revision of the New World genus Ceraeochrysa (Neuroptera: Chrysopidae).

The sixty-four known species of Ceraeochrysa Adams, 1982 are described, illustrated, and GEOGRAPHICAL DISTRIBUTIONS given. A preliminary phylogeny of the species is presented. Eleven species are newly described (C. achillea, C. angusta, C. beliaensis, C. bitacornua, C. chiricahuae, C. curvabilis, C. digitata, C. derospogon, C. diverticula, C. forcipata, and C. panamensis). Two species are returned to this genus (C. laufferi and C. placita). Three names are synonymized: Chrysopa silvestrina Navas, 1929 = Ceraeochrysa cincta (Schneider, 1851); Chrysopa gradata Navas, 1913 = Ceraeochrysa effusa (Navas, 1911); and Chrysopa aroguesina Navas, 1929 = Ceraeochrysa laufferi (Navas, 1922). Two new lectotype designations are indicated: Chrysopa cincta Schneider, 1851 and Chrysopa valida Banks, 1895. New status is given to Ceraeochrysa parvula (Banks, 1903).