Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes

Research in autophagy continues to accelerate,(1) and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.(2,3) There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.

Fatigue and sleep-disordered breathing in multiple sclerosis: a clinically relevant association?

Background. Fatigue in patients with multiple sclerosis (MS) is highly prevalent and severely impacts quality of life. Recent studies suggested that sleep-disordered breathing (SDB) significantly contributes to fatigue in MS. Study Objective. To evaluate the importance of routine respirography in MS patients with severe fatigue and to explore the effects of treatment with continuous positive airway pressure (CPAP). Patients and Methods. We prospectively assessed the presence of severe fatigue, as defined by a score of ≥5.0 on the Fatigue Severity Scale (FSS), in 258 consecutive MS patients. Ninety-seven patients (38%) suffered from severe fatigue, whereof 69 underwent overnight respirography. Results. We diagnosed SDB in 28 patients (41%). Male sex was the only independent associate of SDB severity (P = 0.003). CPAP therapy in 6 patients was associated with a significant reduction of FSS scores (5.8 ± 0.5 versus 4.8 ± 0.6, P = 0.04), but the scores remained pathological (≥4.0) in all patients. Conclusion. Respirography in MS patients with severe fatigue should be considered in daily medical practice, because SDB frequency is high and CPAP therapy reduces fatigue severity. However, future work is needed to understand the real impact of CPAP therapy on quality of life in this patient group.

FORA - A Fuzzy Set Based Framework for Online Reputation Management

The Social Web offers increasingly simple ways to publish and disseminate personal or opinionated information, which can rapidly exhibit a disastrous influence on the online reputation of organizations. Based on social Web data, this study describes the building of an ontology based on fuzzy sets. At the end of a recurring harvesting of folksonomies by Web agents, the aggregated tags are purified, linked, and transformed to a so-called fuzzy grassroots ontology by means of a fuzzy clustering algorithm. This self-updating ontology is used for online reputation analysis, a crucial task of reputation management, with the goal to follow the online conversation going on around an organization to discover and monitor its reputation. In addition, an application of the Fuzzy Online Reputation Analysis (FORA) framework, lesson learned, and potential extensions are discussed in this article.

Optimización de la programación(scheduling) en Talleres de Mecanizado

Los problemas de programación de tareas son muy importantes en el mundo actual. Se puede decir que se presentan en todos los fundamentos de la industria moderna, de ahí la importancia de que estos sean óptimos, de forma que se puedan ahorrar recursos que estén asociados al problema. La programación adecuada de trabajos en procesos de manufactura, constituye un importante problema que se plantea dentro de la producción en muchas empresas. El orden en que estos son procesados, no resulta indiferente, sino que determinará algún parámetro de interés, cuyos valores convendrá optimizar en la medida de lo posible. Así podrá verse afectado el coste total de ejecución de los trabajos, el tiempo necesario para concluirlos o el stock de productos en curso que será generado. Esto conduce de forma directa al problema de determinar cuál será el orden más adecuado para llevar a cabo los trabajos con vista a optimizar algunos de los anteriores parámetros u otros similares. Debido a las limitaciones de las técnicas de optimización convencionales, en la presente tesis se presenta una metaheurística basada en un Algoritmo Genético Simple (Simple Genetic Algorithm, SGA), para resolver problemas de programación de tipo flujo general (Job Shop Scheduling, JSS) y flujo regular (Flow Shop Scheduling, FSS), que están presentes en un taller con tecnología de mecanizado con el objetivo de optimizar varias medidas de desempeño en un plan de trabajo. La aportación principal de esta tesis, es un modelo matemático para medir el consumo de energía, como criterio para la optimización, de las máquinas que intervienen en la ejecución de un plan de trabajo. Se propone además, un método para mejorar el rendimiento en la búsqueda de las soluciones encontradas, por parte del Algoritmo Genético Simple, basado en el aprovechamiento del tiempo ocioso. ABSTRACT The scheduling problems are very important in today's world. It can be said to be present in all the basics of modern industry, hence the importance that these are optimal, so that they can save resources that are associated with the problem. The appropriate programming jobs in manufacturing processes is an important problem that arises in production in many companies. The order in which they are processed, it is immaterial, but shall determine a parameter of interest, whose values agree optimize the possible. This may be affected the total cost of execution of work, the time needed to complete them or the stock of work in progress that will be generated. This leads directly to the problem of determining what the most appropriate order to carry out the work in order to maximize some of the above parameters or other similar. Due to the limitations of conventional optimization techniques, in this work present a metaheuristic based on a Simple Genetic Algorithm (Simple Genetic Algorithm, SGA) to solve programming problems overall flow rate (Job Shop Scheduling, JSS) and regular flow (Flow Shop Scheduling, FSS), which are present in a workshop with machining technology in order to optimize various performance measures in a plan. The main contribution of this thesis is a mathematical model to measure the energy consumption as a criterion for the optimization of the machines involved in the implementation of a work plan. It also proposes a method to improve performance in finding the solutions, by the simple genetic algorithm, based on the use of idle time.

New EBG solutions for mutual coupling reduction

Electromagnetic Band Gap (EBG) based on Frequency Selective Surfaces (FSS) [1] are one type of metamaterials [2] with electrical properties [3]. This EBG are used in mutual coupling reduction, back lobe radiation reduction, etc. In this work not only new shapes for the mushroom-type are presented, but also multilayered configurations were studied in order to reduce the patch size and the necessary number of elements.

Contribución al estudio de las negaciones, autocontradicción, t-normas y t-conormas en los conjuntos borrosos de tipo 2

Los conjuntos borrosos de tipo 2 (T2FSs) fueron introducidos por L.A. Zadeh en 1975 [65], como una extensión de los conjuntos borrosos de tipo 1 (FSs). Mientras que en estos últimos el grado de pertenencia de un elemento al conjunto viene determinado por un valor en el intervalo [0, 1], en el caso de los T2FSs el grado de pertenencia de un elemento es un conjunto borroso en [0,1], es decir, un T2FS queda determinado por una función de pertenencia μ : X → M, donde M = [0, 1][0,1] = Map([0, 1], [0, 1]), es el conjunto de las funciones de [0,1] en [0,1] (ver [39], [42], [43], [61]). Desde que los T2FSs fueron introducidos, se han generalizado a dicho conjunto (ver [39], [42], [43], [61], por ejemplo), a partir del “Principio de Extensión” de Zadeh [65] (ver Teorema 1.1), muchas de las definiciones, operaciones, propiedades y resultados obtenidos en los FSs. Sin embargo, como sucede en cualquier área de investigación, quedan muchas lagunas y problemas abiertos que suponen un reto para cualquiera que quiera hacer un estudio profundo en este campo. A este reto se ha dedicado el presente trabajo, logrando avances importantes en este sentido de “rellenar huecos” existentes en la teoría de los conjuntos borrosos de tipo 2, especialmente en las propiedades de autocontradicción y N-autocontradicción, y en las operaciones de negación, t-norma y t-conorma sobre los T2FSs. Cabe destacar que en [61] se justifica que las operaciones sobre los T2FSs (Map(X,M)) se pueden definir de forma natural a partir de las operaciones sobre M, verificando las mismas propiedades. Por tanto, por ser más fácil, en el presente trabajo se toma como objeto de estudio a M, y algunos de sus subconjuntos, en vez de Map(X,M). En cuanto a la operación de negación, en el marco de los conjuntos borrosos de tipo 2 (T2FSs), usualmente se emplea para representar la negación en M, una operación asociada a la negación estándar en [0,1]. Sin embargo, dicha operación no verifica los axiomas que, intuitivamente, debe verificar cualquier operación para ser considerada negación en el conjunto M. En este trabajo se presentan los axiomas de negación y negación fuerte en los T2FSs. También se define una operación asociada a cualquier negación suprayectiva en [0,1], incluyendo la negación estándar, y se estudia, junto con otras propiedades, si es negación y negación fuerte en L (conjunto de las funciones de M normales y convexas). Además, se comprueba en qué condiciones se cumplen las leyes de De Morgan para un extenso conjunto de pares de operaciones binarias en M. Por otra parte, las propiedades de N-autocontradicción y autocontradicción, han sido suficientemente estudiadas en los conjuntos borrosos de tipo 1 (FSs) y en los conjuntos borrosos intuicionistas de Atanassov (AIFSs). En el presente trabajo se inicia el estudio de las mencionadas propiedades, dentro del marco de los T2FSs cuyos grados de pertenencia están en L. En este sentido, aquí se extienden los conceptos de N-autocontradicción y autocontradicción al conjunto L, y se determinan algunos criterios para verificar tales propiedades. En cuanto a otras operaciones, Walker et al. ([61], [63]) definieron dos familias de operaciones binarias sobre M, y determinaron que, bajo ciertas condiciones, estas operaciones son t-normas (normas triangulares) o t-conormas sobre L. En este trabajo se introducen operaciones binarias sobre M, unas más generales y otras diferentes a las dadas por Walker et al., y se estudian varias propiedades de las mismas, con el objeto de deducir nuevas t-normas y t-conormas sobre L. ABSTRACT Type-2 fuzzy sets (T2FSs) were introduced by L.A. Zadeh in 1975 [65] as an extension of type-1 fuzzy sets (FSs). Whereas for FSs the degree of membership of an element of a set is determined by a value in the interval [0, 1] , the degree of membership of an element for T2FSs is a fuzzy set in [0,1], that is, a T2FS is determined by a membership function μ : X → M, where M = [0, 1][0,1] is the set of functions from [0,1] to [0,1] (see [39], [42], [43], [61]). Later, many definitions, operations, properties and results known on FSs, have been generalized to T2FSs (e.g. see [39], [42], [43], [61]) by employing Zadeh’s Extension Principle [65] (see Theorem 1.1). However, as in any area of research, there are still many open problems which represent a challenge for anyone who wants to make a deep study in this field. Then, we have been dedicated to such challenge, making significant progress in this direction to “fill gaps” (close open problems) in the theory of T2FSs, especially on the properties of self-contradiction and N-self-contradiction, and on the operations of negations, t-norms (triangular norms) and t-conorms on T2FSs. Walker and Walker justify in [61] that the operations on Map(X,M) can be defined naturally from the operations onMand have the same properties. Therefore, we will work onM(study subject), and some subsets of M, as all the results are easily and directly extensible to Map(X,M). About the operation of negation, usually has been employed in the framework of T2FSs, a operation associated to standard negation on [0,1], but such operation does not satisfy the negation axioms on M. In this work, we introduce the axioms that a function inMshould satisfy to qualify as a type-2 negation and strong type-2 negation. Also, we define a operation on M associated to any suprajective negation on [0,1], and analyse, among others properties, if such operation is negation or strong negation on L (all normal and convex functions of M). Besides, we study the De Morgan’s laws, with respect to some binary operations on M. On the other hand, The properties of self-contradiction and N-self-contradiction have been extensively studied on FSs and on the Atanassov’s intuitionistic fuzzy sets (AIFSs). Thereon, in this research we begin the study of the mentioned properties on the framework of T2FSs. In this sense, we give the definitions about self-contradiction and N-self-contradiction on L, and establish the criteria to verify these properties on L. Respect to the t-norms and t-conorms, Walker et al. ([61], [63]) defined two families of binary operations on M and found that, under some conditions, these operations are t-norms or t-conorms on L. In this work we introduce more general binary operations on M than those given by Walker et al. and study which are the minimum conditions necessary for these operations satisfy each of the axioms of the t-norm and t-conorm.

Uso de circuitos equivalentes y teoría de filtros para el diseño de superficies selectivas en frecuencia

Frequency selective surfaces (FSS) and reflect/trasmitarrays are mostly designed on the basis ot optimization using an electromagnetic simulator. That is a time consuming method and some decisions have to be taken using simply intuition. The use of equivalent circuits of the scatterers selected for the design allows the substitution of the intuition and most part of the optimization process by the application of the classic rules of filter design. This communication presents all the steps necessary to obtain the equivalent circuit of different square scatterers in a periodic lattice and to implement the desired FSS frequency behaviour calculating the number of layers and the dimensions of the periodic cells. Several examples are included to evaluate the results.

Otimização da inativação fotodinâmica de E. coli por fotossensibilizadores veiculados por nanopartículas de sílica

A nanotecnologia tem sido aplicada para o desenvolvimento de materiais para diversas aplicações inclusive na inativação de patógenos. As nanopartículas de sílica (npSi) destacam-se pela alta área superficial, facilidade na alteração da superfície para aumento da eficiência adsortiva, penetrabilidade e toxicidade para bactérias gram-negativas sendo biocompatíveis para células de mamíferos e mais foto-estáveis que a maioria dos compostos orgânicos. Devido as suas vantagens, as npSi podem ser usadas para veicular fotossensibilizadores (FSs) uma vez que permitem sua utilização em solução aquosa em que os FSs geralmente são insolúveis. Além disso, o uso de FSs em vez de antibióticos, permite a inativação microbiológica pela Terapia Fotodinâmica sem que as bactérias adquiram resistência por mecanismos genéticos. Esse processo ocorre pela interação entre um FS, luz e oxigênio molecular produzindo oxigênio singleto que é extremamente reativo danificando estruturas celulares. O objetivo desse estudo foi otimizar a fotoinativação dinâmica de E .coli utilizando Azul de Metileno (AM) e Azul de Toluidina O (ATO) veiculados por npSi. As npSi foram preparadas pela metodologia sol-gel, caracterizadas por microscopia eletrônica de varredura (MEV) e submetidas à adsorção de AM e ATO em sua superfície. A presença de AM e ATO na superfície das npSi foram analisadas por espectroscopia no infravermelho; espectroscopia de fluorescência por raio-X e análise termogravimétrica. O planejamento experimental, iniciado pelo fatorial 23 e modelado ao composto central em busca das condições ótimas foi adotado pela primeira vez nessa aplicabilidade, visando a fotoinativação de E. coli empregando AM e ATO em solução e em seguida com npSi. AM e ATO veiculados por npSi permitem a fotoinativação em concentrações mais baixas de FS (20 e 51% respectivamente), causando desestruturação da integridade bacteriana demonstrada por MEV. Os resultados sugerem que a veiculação de AM e ATO por npSi é extremamente efetiva para a fotoinativação dinâmica de E. coli e que o planejamento composto central pode levar à completa inativação das bactérias.

Investigating the Role of cAMP-Signaling in the Regulation of Vascular Endothelial Cell Adaptive Responses to Fluid Shear Stress

The circulating blood exerts a force on the vascular endothelium, termed fluid shear stress (FSS), which directly impacts numerous vascular endothelial cell (VEC) functions. For example, high rates of linear and undisturbed (i.e. laminar) blood flow maintains a protective and quiescent VEC phenotype. Meanwhile, deviations in blood flow, which can occur at vascular branchpoints and large curvatures, create areas of low, and/or oscillatory FSS, and promote a pro-inflammatory, pro-thrombotic and hyperpermeable phenotype. Indeed, it is known that these areas are prone to the development of atherosclerotic lesions. Herein, we show that cyclic nucleotide phosphodiesterase (PDE) 4D (PDE4D) activity is increased by FSS in human arterial endothelial cells (HAECs) and that this activation regulates the activity of cAMP-effector protein, Exchange Protein-activated by cAMP-1 (EPAC1), in these cells. Importantly, we also show that these events directly and critically impact HAEC responses to FSS, especially when FSS levels are low. Both morphological events induced by FSS, as measured by changes in cell alignment and elongation in the direction of FSS, and the expression of critical FSS-regulated genes, including Krüppel-like factor 2 (KLF2), endothelial nitric oxide synthase (eNOS) and thrombomodlin (TM), are mediated by EPAC1/PDE4D signaling. At a mechanistic level, we show that EPAC1/PDE4D acts through the vascular endothelial-cadherin (VECAD)/ platelet-cell adhesion molecule-1 (PECAM1)/vascular endothelial growth factor receptor 2 (VEGFR2) mechanosensor to activate downstream signaling though Akt. Given the critical role of PDE4D in mediating these effects, we also investigated the impact of various patterns of FSS on the expression of individual PDE genes in HAECs. Notably, PDE2A was significantly upregulated in response to high, laminar FSS, while PDE3A was upregulated under low, oscillatory FSS conditions only. These data may provide novel therapeutic targets to limit FSS-dependent endothelial cell dysfunction (ECD) and atherosclerotic development.

IVHS Institutional and Legal Issues Program. Review of the Travlink and Genesis operational tests. Final report.

Federal Highway Administration, Washington, D.C.

ITS Institutional and Legal Issues Program. Review of the Houston Smart Commuter operational test. Final report.

Transportation Department, Joint Program Office for Intelligent Transportation Systems, Washington, D.C.

ITS Institutional and Legal Issues Program. Review of the SaFIRES operational test. Final report.

Transportation Department, Joint Program Office for Intelligent Transportation Systems, Washington, D.C.

ITS Institutional and Legal Issues Program. Review of the SmarTraveler operational test. Final report.

Federal Highway Administration, Washington, D.C.

ITS Institutional and Legal Issues Program. Review of the TravelAid operational test. Final report.

Federal Highway Administration, Washington, D.C.