Complementary intrastrand base pairing during initiation of Herpes simplex virus type 1 DNA replication

The herpes simplex virus type 1 origin of DNA replication, oriS, contains three copies of the recognition sequence for the viral initiator protein, origin binding protein (OBP), arranged in two palindromes. The central box I forms a short palindrome with box III and a long palindrome with box II. Single-stranded oriS adopts a conformation, oriS*, that is tightly bound by OBP. Here we demonstrate that OBP binds to a box III–box I hairpin with a 3′ single-stranded tail in oriS*. Mutations designed to destabilize the hairpin abolish the binding of OBP to oriS*. The same mutations also inhibit DNA replication. Second site complementary mutations restore binding of OBP to oriS* as well as the ability of mutated oriS to support DNA replication. OriS* is also an efficient activator of the hydrolysis of ATP by OBP. Sequence analyses show that a box III–box I palindrome is an evolutionarily conserved feature of origins of DNA replication from human, equine, bovine, and gallid alpha herpes viruses. We propose that oriS facilitates initiation of DNA synthesis in two steps and that OBP exhibits exquisite specificity for the different conformations oriS adopts at these stages. Our model suggests that distance-dependent cooperative binding of OBP to boxes I and II in duplex DNA is succeeded by specific recognition of a box III–box I hairpin in partially unwound DNA.

[Letter from M. Everett to Dr. Cooper], undated

Handwritten letter from [Moses] Everett requesting the Harvard Corporation to consider readmitting Philip Draper.

Brachiopod genera of the suborders Orthoidea and Pentameroidea, by Charles Schuchert and G. Arthur Cooper.

4. pt.1

Guarantee of financial support for student James Savage, signed by William Tudor and John Cooper, 1799 July 25

This legal agreement, a guarantee of financial support for entering student James Savage (A.B. 1803), was signed on July 25, 1799 by his two guarantors, William Tudor and John Cooper. The document was also signed by two witnesses, William Tudor's sons John Henry Tudor and Frederic Tudor. The agreement specifies that, in the event of Savage's failure to settle all financial obligations to the President and Fellows of Harvard College during the course of his studies, the two guarantors would be responsible for a payment of two hundred ounces of silver. It seems that the Tudors and Cooper were relatives of Savage, thus explaining their desire to assure his entry to Harvard by entering into this financial obligation.

Letter from John Cooper to William Tudor,

One letter regarding the death of Tudor’s father and the acreage of his estate.

St. Stephen Powerhouse fish lift, Cooper River Rediversion Project, South Carolina : hydraulic model investigation /

"March 1993."

Bulletin of the Cooper Ornithological Club.

Title from cover.

Lincoln episcopal records in the time of Thomas Cooper ... bishop of Lincoln, A.D. 1571 to A.D. 1584,

Published also, 1912, as v. 2 of the Publications of the Lincoln record society.

Correspondence of James Fenimore-Cooper /

Includes idnex.