Metabolic and ecological study of environmental pentose utilizing bacteria (E-PUB)

Lignocellulosic materials, such as sugar cane bagasse, a waste product of the sugarcane processing industry, agricultural residues and herbaceous crops, may serve as an abundant and comparatively cheap feedstock for largescale industrial fermentation, resulting in the production of marketable end-products. However, the complex structure of lignocellulosic materials, the presence of various hexose and pentose sugars in the hemicellulose component, and the presence of various compounds that inhibit the organisms selected for the fermentation process, all constitute barriers that add to the production costs and make full scale industrial production economically less feasible. The work presented in this thesis was conducted in order to screen microorganisms for ability to utilize pentose sugars derived from the sugar mill industrial waste. A large number of individual bacterial strains were investigated from hemi-cellulose rich material collected at the Proserpine and Maryborough sugar mills, notably soil samples from the mill sites. The research conducted to isolation of six pentose-capable Gram-positive organisms from the actinomycetes group by using pentose as a sole carbon source in the cultivation process. The isolates were identified as Corynebacterium glutamicum, Actinomyces odontolyticus, Nocardia elegans, and Propionibacterium freudenreichii all of which were isolated from the hemicellulose-enriched soil. Pentose degrading microbes are very rare in the environment, so this was a significant discovery. Previous research indicated that microbes could degrade pentose after genetic modification but the microbes discovered in this research were able to naturally utilize pentose. Six isolates, identified as four different genera, were investigated for their ability to utilize single sugars as substrates (glucose, xylose, arabinose or ribose), and also dual sugars as substrates (a hexose plus a pentose). The results demonstrated that C. glutamicum, A. odontolyticus, N. elegans, and P. freudenreichii were pentose-capable (able to grow using xylose or other pentose sugar), and also showed diauxie growth characteristics during the dual-sugar (glucose, in combination with xylose, arabinose or ribose) carbon source tests. In addition, it was shown that the isolates displayed very small differences in growth rates when grown on dual sugars as compared to single sugars, whether pentose or hexose in nature. The anabolic characteristics of C. glutamicum, A. odontolyticus, N. elegans and P. freudenreichii were subsequently investigated by qualitative analysis of their end-products, using high performance liquid chromatography (HPLC). All of the organisms produced arginine and cysteine after utilization of the pentose substrates alone. In addition, P. freudenreichii produced alanine and glycine. The end-product profile arising from culture with dual carbon sources was also tested. Interestingly, this time the product was different. All of them produced the amino acid glycine, when grown on a combination substrate-mix of glucose with xylose, and also glucose with arabinose. Only N. elegans was able to break down ribose, either singly or in combination with glucose, and the end-product of metabolism of the glucose plus ribose substrate combination was glutamic acid. The ecological analysis of microbial abundance in sugar mill waste was performed using denaturing gradient gel electrophoresis (DGGE) and also the metagenomic microarray PhyloChip method. Eleven solid samples and seven liquid samples were investigated. A very complex bacterial ecosystem was demonstrated in the seven liquid samples after testing with the PhyloChip method. It was also shown that bagasse leachate was the most different, compared to all of the other samples, by virtue of its richness in variety of taxa and the complexity of its bacterial community. The bacterial community in solid samples from Proserpine, Mackay and Maryborough sugar mills showed huge diversity. The information found from 16S rDNA sequencing results was that the bacterial genera Brevibacillus, Rhodospirillaceae, Bacillus, Vibrio and Pseudomonas were present in greatest abundance. In addition, Corynebacterium was also found in the soil samples. The metagenomic studies of the sugar mill samples demonstrate two important outcomes: firstly that the bagasse leachate, as potentially the most pentose-rich sample tested, had the most complex and diverse bacterial community; and secondly that the pentose-capable isolates that were initially discovered at the beginning of this study, were not amongst the most abundant taxonomic groups discovered in the sugar mill samples, and in fact were, as suspected, very rare. As a bioprospecting exercise, therefore, the study has discovered organisms that are naturally present, but in very small numbers, in the appropriate natural environment. This has implications for the industrial application of E-PUB, in that a seeding process using a starter culture will be necessary for industrial purposes, rather than simply assuming that natural fermentation might occur.

Transcutaneous immunization with a novel lipid-based adjuvant protects against Chlamydia genital and respiratory infections

Mucosal adjuvants are important to overcome the state of immune tolerance normally associated with mucosal delivery and to enhance adaptive immunity to often-weakly immunogenic subunit vaccine antigens. Unfortunately, adverse side effects of many experimental adjuvants limit the number of adjuvants approved for vaccination. Lipid C is a novel, non-toxic, lipid oral vaccine-delivery formulation, developed originally for oral delivery of the live Mycobacterium bovis Bacille Calmette-Guerin (BCG) vaccine. In the present study, murine models of chlamydial respiratory and genital tract infections were used to determine whether transcutaneous immunization (TCI) with Lipid C-incorporated protein antigens could elicit protective immunity at the genital and respiratory mucosae. BALB/c mice were immunized transcutaneously with Lipid C containing the chlamydial major outer membrane protein (MOMP), with and without addition of cholera toxin and CpG-ODN 1826 (CT/CpG). Both vaccine combinations induced mixed cell-mediated and mucosal antibody immune responses. Immunization with Lipid C-incorporated MOMP (Lipid C/MOMP), either alone or with CT/CpG resulted in partial protection following live challenge with Chlamydia muridarum as evidenced by a significant reduction in recoverable Chlamydia from both the genital secretions and lung tissue. Protection induced by immunization with Lipid C/MOMP alone was not further enhanced by the addition of CT/CpG. These results highlight the potential of Lipid C as a novel mucosal adjuvant capable of targeting multiple mucosal surfaces following TCI. Protection at both the respiratory and genital mucosae was achieved without the requirement for potentially toxic adjuvants, suggesting that Lipid C may provide a safe effective mucosal adjuvant for human vaccination.

Brief report: Intestinal dysbiosis in ankylosing spondylitis

Objective Ankylosing spondylitis (AS) is a common, highly heritable immune-mediated arthropathy that occurs in genetically susceptible individuals exposed to an unknown but likely ubiquitous environmental trigger. There is a close relationship between the gut and spondyloarthritis, as exemplified in patients with reactive arthritis, in whom a typically self-limiting arthropathy follows either a gastrointestinal or urogenital infection. Microbial involvement in AS has been suggested; however, no definitive link has been established. The aim of this study was to determine whether the gut in patients with AS carries a distinct microbial signature compared with that in the gut of healthy control subjects. Methods Microbial profiles for terminal ileum biopsy specimens obtained from patients with recent-onset tumor necrosis factor antagonist-naive AS and from healthy control subjects were generated using culture-independent 16S ribosomal RNA gene sequencing and analysis techniques. Results Our results showed that the terminal ileum microbial communities in patients with AS differ significantly (P < 0.001) from those in healthy control subjects, driven by a higher abundance of 5 families of bacteria (Lachnospiraceae [P = 0.001], Ruminococcaceae [P = 0.012], Rikenellaceae [P = 0.004], Porphyromonadaceae [P = 0.001], and Bacteroidaceae [P = 0.001]) and a decrease in the abundance of 2 families of bacteria (Veillonellaceae [P = 0.01] and Prevotellaceae [P = 0.004]). Conclusion We show evidence for a discrete microbial signature in the terminal ileum of patients with AS compared with healthy control subjects. The microbial composition was demonstrated to correlate with disease status, and greater differences were observed between disease groups than within disease groups. These results are consistent with the hypothesis that genes associated with AS act, at least in part, through effects on the gut microbiome.

Productivity and health effects of anaplasmosis and babesiosis on Bos indicus cattle and their crosses, and the effects of differing intensity of tick control in Australia

Tick fever is an important disease of cattle where Rhipicephalus (Boophilus) microplus acts as a vector for the three causal organisms Babesia bovis, Babesia bigemina and Anaplasma marginale. Bos indicus cattle and their crosses are more resistant to the clinical effects of infection with B. bovis and B. bigemina than are Bos taurus cattle. Resistance is not complete, however, and herds of B. indicus-cross cattle are still at risk of babesiosis in environments where exposure to B. bovis is light in most years but occasionally high. The susceptibility of B. indicus cattle and their crosses to infection with A. marginale is similar to that of B. taurus cattle. In herds of B. indicus cattle and their crosses the infection rate of Babesia spp. and A. marginale is lowered because fewer ticks are likely to attach per day due to reduced numbers of ticks in the field (long-term effect on population, arising from high host resistance) and because a smaller proportion of ticks that do develop to feed on infected cattle will in turn be infected (due to lower parasitaemia). As a consequence, herds of B. indicus cattle are less likely than herds of B. taurus cattle to have high levels of population immunity to babesiosis or anaplasmosis. The effects of acaricide application on the probability of clinical disease due to anaplasmosis and babesiosis are unpredictable and dependent on the prevalence of infection in ticks and in cattle at the time of application. Attempting to manipulate population immunity through the toleration of specific threshold numbers of ticks with the aim of controlling tick fever is not reliable and the justification for acaricide application should be for the control of ticks rather than for tick fever. Vaccination of B. indicus cattle and their crosses is advisable in all areas where ticks exist, although vaccination against B. bigemina is probably not essential in pure B. indicus animals.

Trends in therapeutic and prevention strategies for management of Bovine Mastitis: An overview

Mastitis is one of the most economically significant diseases for the dairy industry for backyard farmers in developing countries and high producing herds worldwide. Two of the major factors impeding reduction in the incidence of this disease is [a] the lack of availability of an effective vaccine capable of protecting against multiple etiological agents and [b] propensity of some of the etiological agents to develop persistent antibiotic resistance in biofilms. This is further complicated by the continuing revolving shift in the predominant etiological agents of mastitis, depending upon a multitude of factors such as variability in hygienic practices on farms, easy access leading to overuse of appropriate or inappropriate antibiotics at suboptimal concentrations, particularly in developing countries, and lack of compliance with the recommended treatment schedules. Regardless, Staphylococcus aureus and Streptococcus uberis followed by Escherichia coli, Streptococcus agalactiae has become the predominant etiological agents of bovine mastitis followed Streptococcus agalactiae, Streptococcus dysagalactiae, Klebsiella pneumonia and the newly emerging Mycoplasma bovis. Current approaches being pursued to reduce the negative economic impact of this disease are through early diagnosis of infection, immediate treatment with an antibiotic found to either inhibit or kill the pathogen(s) in vitro using planktonic cultures and the use of the currently marketed vaccines regardless of their demonstrated effectiveness. Given the limitations of breeding programs, including genetic selection to improve resistance against infectious diseases including mastitis, it is imperative to have the availability of an effective broad-spectrum, preferably cross-protective, vaccine capable of protecting against bovine mastitis for reduction in the incidence of bovine mastitis, as well as interrupting the potential cross-species transmission to humans. This overview highlights the major etiological agents, factors affecting susceptibility to mastitis, and the current status of antibiotic-based therapies and prototype vaccine candidates or commercially available vaccines against bovine mastitis as potential preventative strategies. © 2013 Tiwari JG, et al.

Pathogen-specific TLR2 Protein Activation Programs Macrophages to Induce Wnt-beta-Catenin Signaling

Innate immunity recognizes and resists various pathogens; however, the mechanisms regulating pathogen versus non-pathogen discrimination are still imprecisely understood. Here, we demonstrate that pathogen-specific activation of TLR2 upon infection with Mycobacterium bovis BCG, in comparison with other pathogenic microbes, including Salmonella typhimurium and Staphylococcus aureus, programs macrophages for robust up-regulation of signaling cohorts of Wnt-beta-catenin signaling. Signaling perturbations or genetic approaches suggest that infection-mediated stimulation of Wnt-beta-catenin is vital for activation of Notch1 signaling. Interestingly, inducible NOS (iNOS) activity is pivotal for TLR2-mediated activation of Wnt-beta-catenin signaling as iNOS(-/-) mice demonstrated compromised ability to trigger activation of Wnt-beta-catenin signaling as well as Notch1-mediated cellular responses. Intriguingly, TLR2-driven integration of iNOS/NO, Wnt-beta-catenin, and Notch1 signaling contributes to its capacity to regulate the battery of genes associated with T(Reg) cell lineage commitment. These findings reveal a role for differential stimulation of TLR2 in deciding the strength of Wnt-beta-catenin signaling, which together with signals from Notch1 contributes toward the modulation of a defined set of effector functions in macrophages and thus establishes a conceptual framework for the development of novel therapeutics.

Cyclic AMP-dependent protein lysine acylation in mycobacteria regulates fatty acid and propionate metabolism

Acetylation of lysine residues is a posttranslational modification that is used by both eukaryotes and prokaryotes to regulate a variety of biological processes. Here we identify multiple substrates for the cAMP-dependent protein lysine acetyltransferase from Mycobacterium tuberculosis (KATmt). We demonstrate that a catalytically important lysine residue in a number of FadD (fatty acyl CoA synthetase) enzymes is acetylated by KATmt in a cAMP-dependent manner and that acetylation inhibits the activity of FadD enzymes. A sirtuin-like enzyme can deacetylate multiple FadDs, thus completing the regulatory cycle. Using a strain deleted for the KATmt ortholog in Mycobacterium bovis Bacillus Calmette-Guerin (BCG), we show for the first time that acetylation is dependent on intracellular cAMP levels. KATmt can utilize propionyl CoA as a substrate and, therefore, plays a critical role in alleviating propionyl CoA toxicity in mycobacteria by inactivating acyl CoA synthetase (ACS). The precision by which mycobacteria can regulate the metabolism of fatty acids in a cAMP-dependent manner appears to be unparalleled in other biological organisms and is ideally suited to adapt to the complex environment that pathogenic mycobacteria experience in the host.

Asymmetric cell division in Mycobacterium tuberculosis and its unique features

Recently, several reports showed that about 80 % of mid-log phase Mycobacterium smegmatis, Mycobacterium marinum, and Mycobacterium bovis BCG cells divide symmetrically with 5-10 % deviation in the septum position from the median. However, the mode of cell division of the pathogenic mycobacterial species, Mycobacterium tuberculosis, remained unclear. Therefore, in the present study, using electron microscopy, fluorescence microscopy of septum- and nucleoid-stained live and fixed cells, and live cell time-lapse imaging, we show the occurrence of asymmetric cell division with unusually deviated septum/constriction in 20 % of the 15 % septating M. tuberculosis cells in the mid-log phase population. The remaining 80 % of the 15 % septating cells divided symmetrically but with 2-5 % deviation in the septum/constriction position, as reported for M. smegmatis, M. marinum, and M. bovis BCG cells. Both the long and the short portions of the asymmetrically dividing M. tuberculosis cells with unusually deviated septum contained nucleoids, thereby generating viable short and long cells from each asymmetric division. M. tuberculosis short cells were acid fast positive and, like the long cells, further readily underwent growth and division to generate micro-colony, thereby showing that they were neither mini cells, spores nor dormant forms of mycobacteria. The freshly diagnosed pulmonary tuberculosis patients' sputum samples, which are known for the prevalence of oxidative stress conditions, also contained short cells at the same proportion as that in the mid-log phase population. The probable physiological significance of the generation of the short cells through unusually deviated asymmetric cell division is discussed.

The Glycosylated Rv1860 Protein of Mycobacterium tuberculosis Inhibits Dendritic Cell Mediated TH1 and TH17 Polarization of T Cells and Abrogates Protective Immunity Conferred by BCG

We previously reported interferon gamma secretion by human CD4(+) and CD8(+) T cells in response to recombinant E. coli-expressed Rv1860 protein of Mycobacterium tuberculosis (MTB) as well as protection of guinea pigs against a challenge with virulent MTB following prime-boost immunization with DNA vaccine and poxvirus expressing Rv1860. In contrast, a Statens Serum Institute Mycobacterium bovis BCG (BCG-SSI) recombinant expressing MTB Rv1860 (BCG-TB1860) showed loss of protective ability compared to the parent BCG strain expressing the control GFP protein (BCG-GFP). Since Rv1860 is a secreted mannosylated protein of MTB and BCG, we investigated the effect of BCG-TB1860 on innate immunity. Relative to BCG-GFP, BCG-TB1860 effected a significant near total reduction both in secretion of cytokines IL-2, IL-12p40, IL-12p70, TNF-alpha, IL-6 and IL-10, and up regulation of co-stimulatory molecules MHC-II, CD40, CD54, CD80 and CD86 by infected bone marrow derived dendritic cells (BMDC), while leaving secreted levels of TGF-beta unchanged. These effects were mimicked by BCG-TB1860His which carried a 6-Histidine tag at the C-terminus of Rv1860, killed sonicated preparations of BCG-TB1860 and purified H37Rv-derived Rv1860 glycoprotein added to BCG-GFP, but not by E. coli-expressed recombinant Rv1860. Most importantly, BMDC exposed to BCG-TB1860 failed to polarize allogeneic as well as syngeneic T cells to secrete IFN-gamma and IL-17 relative to BCG-GFP. Splenocytes from mice infected with BCG-SSI showed significantly less proliferation and secretion of IL-2, IFN-gamma and IL-17, but secreted higher levels of IL-10 in response to in vitro restimulation with BCG-TB1860 compared to BCG-GFP. Spleens from mice infected with BCG-TB1860 also harboured significantly fewer DC expressing MHC-II, IL-12, IL-2 and TNF-alpha compared to mice infected with BCG-GFP. Glycoproteins of MTB, through their deleterious effects on DC may thus contribute to suppress the generation of a TH1- and TH17-dominated adaptive immune response that is vital for protection against tuberculosis.

Estudio situacional de la cisticercosis bovina en el matadero MACESA, Juigalpa, Chontales, en el periodo de enero-julio de 2008

Con el objetivo de conocer la casuística de la cisticercosis bovina, se utilizó la inspección sanitaria convencional de la carne, procedencia, tratamiento y pérdidas económicas en los bóvidos faenados en el matadero industrial MACESA ubicado en el km. 130 Juigalpa,Chontales en el periodo comprendido de enero a julio del 2008; se llevó a cabo el presente estudio, los datos recopilados se obtuvieron de los registros de matanza del MAGFOR, Control operativo de sacrificio, Reporte de peso en pie resumido y Control de animales infectados por cisticercosis, quienes utilizan el reglamento de inspección Veterinaria de la carne para la República de Nicaragua. El presente estudio fue observacional de tipo transversal, por estar determinado en un momento de la actividad del matadero. La determinación de la Pre valencia consistió en determinar el número de animales afectados, los cuales se relacionaron con el número de animales faenados por lotes y total. Al iniciarse el estudio, sólo se conocía el número total de individuos que se incluyeron. La medición de la cantidad de enfermedad y de los factores de exposición se realizó simultáneamente una vez seleccionada la muestra. Las variables evaluadas fueron, pre valencia por tamaño del lote, total de animales faenados y pérdidas económicas del matadero por tratamiento, sanciones a los ganaderos y pérdidas totales por condena asumida por los ganaderos. Se encontró una Pre valencia de 0.25% con respecto al total de animales faenados, y un 0.009% para animales condenados. La categoría que presentó mayor Pre valencia y pérdidas económicas por Cysticercus bovis fue Novillos, seguida de la categoría vacas. Los municipios con mayor prevalencia con respect o a la afectación total fueron La Libertad con el 1%, Matiguás 0.99%, Río Blanco 0.84% y Camoapa con el 0.74%. El municipio de Cuapa obtuvo una prevalencia del 16.675 con respecto al lote sacrificado seguido de Juigalpa con el 14.76% y San Pedro de Lovago con el 13.33%. Con respecto a la categorías y en relación a las cantidades sacrificadas, las vacas tienen mayor pre valencia a ésta parasitosis con un 0.53% y los novillos 0.21%. Los meses de mayor incidencia de Cysticercus bovis fueron junio 32 casos, enero y julio con 27. Las pérdidas económicas totales son de $ 11246.84. Se pierde $ 80.9 por bovino infectado con cisticercosis.

Estudio epidemiologico de la prevalencia de cisticercosis bovina en el matadero Nuevo Carnic del municipio de Managua, Nicaragua en el periodo de Enero a Junio 2008

Con el objeto de conocer la prevalencia de Cisticercosis bovina, así como las regiones de mayor afectación y las implicaciones económicas que ello ocasiona en animales faenados en el matadero NUEVO CARNIC, ubicado en el km 10 carretera norte, un km. al norte para el periodo de enero a junio de l 2008, se llevó a cabo el presente estudio, l os datos recopilados se obtuvieron de los registros de matanza del primer semestre del año 2008 (enero a junio), los cuales provenían de los registros de inspección postmorten realizados por los inspectores veterinarios, quienes utilizan el método del reglamento de inspección veterinaria de la carne para la republica de Nicaragua. El presente estudio fue observacional de tipo transversal, por estar determinado en un momento de la actividad del matadero. La determinación de la prevalencia consistió en determinar el número de animales afectados, los cuales se relacionaron con el número de animales faenados por lotes y total. Al iniciarse el estudio, sólo se conocía el número total de individuos que se incluyeron. La medición de la cantidad de enfermedad y de los factores de exposición se realizó simultáneamente una vez seleccionada la muestra. Las variables evaluadas fueron, prevalencia por tamaño del lote y total de animales faenados, regiones anatómicas de mayor afectación y pérdidas económicas para los ganaderos por sanitización y condena. Se encontró una prevalencia de 0.85% con respecto al total de animales faenados, y un 0.04% para animales condenados. La categoría que presentó mayor prevalencia y pérdidas económicas por C. bovis fue toro, seguida de la categoría vacas. El municipio de mayor frecuencia de afectación fue Managua. Las procedencias de San Lorenzo, el Tuma, Ayapal, Paiwas, Muy Muy, Boaco, Nagarote, Estelí, y la Paz Centro fueron los municipios con mayor prevalencia con respecto al total de animales faenados. Cuando el tamaño del lote es mayor de 50 animales la probabilidad de ocurrencia de prevalencia por lote y total son mayores. La región anatómica con mayor prevalencia fueron los músculos maseteros, seguido de la lengua. Las pérdidas económicas para los productores ascendieron a más de 2,000 dólares por mes. Los meses de mayores pérdidas fueron Junio y Marzo. Las procedencias y los pesos no son factores a considerar en los porcentajes de afectación y prevalencia de la enfermedad.

Cisticercosis Bovina, en matadero industrial Nuevo Carnic S.A.

Con el objeto de evaluar la presencia de cisticercosis en su estado quístico larvario en músculos de reses faenadas en el Matadero Industrial Nuevo Carnic S.A; ubicado en el km 10 carretera norte, un km al norte. Realizamos el presente estudio, cuyos datos recopilados se obtuvieron de los registros de matanza de marzo a agosto 2014, los cuales provenían de los registros de inspección post mortem realizados por los inspectores veterinarios. La metodología se basó en la elaboración de un perfil de cada una de las canales de reses identificadas con la presencia de cisticercos y se determinó según la cantidad encontrada de quistes, si serían retenidas o decomisadas. Se determinó la prevalencia de animales afectados, los que se relacionaron con el número de animales faenados por lotes y total, logrando de esta manera identificar la procedencia de los lotes a los que se le diagnosticó la presencia de cisticercosis. Se valoró las pérdidas económicas que esta patología ocasiona a los productores. El estudio tuvo un alcance de 31.37% de los municipios del país, se faenaron 67,423 animales, 258 se trataron por cisticercosis bovina para una prevalencia de 0.38% y se obtuvieron 13 condenas representando una prevalencia de 0.02%. Lo que nos indicó que después de seis años, en comparación con el estudio que llevaron a cabo Pérez y Serrano en el mismo Matadero en el año 2008, la presencia de cisticercosis se ha reducido hasta un 0.45%. La categoría con mayor prevalencia de C. bovis fue la categoría macho representando un 58.67% con respecto a la hembra que se obtuvo un 36.53%, esto se debe que la categoría macho son los animales que se entregan con mayor frecuencia para el sacrificio, y destinados para el engorde. El municipio que presentó mayor frecuencia de animales afectados fue Managua, seguido de Matiguas, Waslala, Bocay, Santo Domingo, Paiwas, San Ramón, Nagarote, Rancho Grande y Estelí; Managua no es un municipio con vocación ganadera, sobre todo de ganado de carne, por lo que se puede considerar como un lugar de acopio de ganado. Los meses que presentaron con mayor prevalencia de cisticercosis bovina fueron Marzo y Agosto, aunque se presentó en todos los meses del estudio, concluyendo que la enfermedad se encuentra durante todo el año y no depende de factores estacionales. Las pérdidas económicas para los productores fueron de $30,162.79 entre animales retenidos y condenados

Root zone microbial populations, urease activities, and purification efficiency for a constructed wetland

In order to investigate the effects of microorganisms and their urease activities in macrophytic root zones on pollutant removal, four small-scale plots (SSPs) of vertical/reverse-vertical flow wetlands were set up to determine: a) the relationship between the abundance of microorganisms in the root zones and water purification efficiency; and b) the relationship between urease activities in the root zones and pollutant removal in a constructed wetland system. Total numbers of the microbial population (bacteria, fungi, and actinomyces) along with urease activities in the macrophytic root zones were determined. In addition, the relationships between microbial populations and urease activities as well as the wastewater purification efficiencies of total phosphorus (TP), total Kjeldahl nitrogen (TKN), biochemical oxygen demand in 5 days (BOD5), and chemical oxygen demand (COD) were also analyzed. The results showed that there was a highly significant positive correlation (r = 0.9772, P < 0.01) between the number of bacteria in the root zones and BOD5 removal efficiency and a significant negative correlation (r = -0.9092, P < 0.05) between the number of fungi and the removal efficiency of TKN. Meanwhile, there was a significant positive correlation (r = 0.8830, P < 0.05) between urease activities in the root zones and the removal efficiency of TKN. Thus, during wastewater treatment in a constructed wetland system, microorganism and urease activities in the root zones were very important factors.

D2-4放线菌的筛选及其抗生物质研究

利用有益微生物及其代谢产物来防治植物病害，已成为一个十分活跃并具有巨大应用前景的领域。本论文采用土壤预处理等特殊方法，从长白山不同高度的土壤中筛选出1068株放线菌。通过对峙培养法和杯碟法，筛选出D1-1等10株对蔬菜病害菌具有抑制作用的菌株。离体叶片实验中发现D2-4发酵液对黄瓜、辣椒、番茄等蔬菜真菌病害具有一定的防治效果。以水和常用化学农药作为空白和药物对照，对D2-4发酵液进行了盆栽实验，结果对番茄灰霉、辣椒根腐和黄瓜枯萎病的防治效果分别为70.65％、63.27％、65.04％，初步显示出良好的防治效果。通过单因素和均匀设计实验，优化了DZ-4菌发酵培养基的组成，考察了培养时间、接种量、菌龄等对抑菌活性的影响。确定了最佳发酵培养基成分：黄豆饼粉1.10％、葡萄糖2.71％、蔗糖1.00％、NaCl0.10％、酵母膏0.10％、发酵培养基初始pH为6.61。最佳发酵时间为96h左右，培养20～24h的种子液以7％的接种量转接有利于提高抑菌活性。经发酵培养基和发酵条件的优化，发酵液抑菌活性达到了6588 u／ml，比原始发酵培养基（3678 u／ml）活性提高了79.12％。经发酵液的预处理、离子交换层析、吸附柱层析、高效液相色谱纯化等步骤，对D2-4抗生素进行了分离纯化研究。通过纸层析、纸电泳等试验最后确定该农用抗生素为弱碱性水溶性抗生素。对D2-4抗生素纯品进行了红外吸收光谱、紫外吸收光谱等理化性质的研究。

繁茂膜海绵中放线菌的鉴定及S19抗菌素主要特性的研究

近年的研究表明，海绵微生物是某些海绵天然产物的真正产生者。因此，人们将海绵微生物作为开发海绵天然产物的重要来源之一。采用琼脂块法和液体扩散法，从分离自中国黄渤海大连海域的海绵优势种—繁茂膜海绵的28株放线菌中筛选到4株具有抗菌活性的放线菌，并对它们进行生物学鉴定。采用经典和现代分类鉴定方法，对4株具有抗菌活性的繁茂膜海绵放线菌的形态特征、培养特征、生理生化特征、细胞壁化学组分和16SrRNA序列进行了研究，得出种水平的鉴定结果：Hmp-S14为西唐氏链霉菌Streptomycessetonii；Hmp-S19为灰色链霉菌Streptomyces griseus；Hmp-S24为桔橙小单抱菌Micromonospora aurantiaca；Hmp-S26为生二素链霉菌Streptomyces ambifaciens。在四株具有抗菌活性的繁茂膜海绵放线菌中，菌株Hmp-S19的抗菌活性优于其它三株，并且与已报道的20多种灰色链霉菌菌株有不同的生理生化特性，故进一步优化其发酵条件并初步研究了S19抗菌素的理化性质。通过单因子和均匀设计实验，优化菌株Hmp-S19摇瓶发酵条件。确定最佳发酵培养基：玉米粉0.6％，葡萄糖0.1％，豆饼粉0.5％，NaCl 0.3％，KH2PO40.08％，CaCO30.08％，MgSO40.02％；最佳发酵条件：接种龄30h，接种量5％，初始pH7．0，发酵时间96h，装液量100ml／50ml，培养温度28 ℃。应用二剂量法测定519一抗菌素的相对效价，为5154μ/ml，较原始发酵培养基和发酵条件（3364μ/ml）提高了53％。通过pH纸层析和捷克八溶剂系统纸层析试验，初步判定519抗菌素为两性、非水溶性I型抗菌素。Hmp-S19发酵液经预处理、萃取、硅胶柱层析、制备薄层层析等步骤，对S19抗菌素进行分离纯化得粗制品，并进行了液 相色谱一质谱检测。