River Dart Salmon Project. Summary of Phase I report.

This is the River Dart Salmon Project Summary of Phase I Report (2002) by the Westcountry Rivers Trust. The report contains sections on the introduction to Dart Salmon, factors affecting salmon numbers, salmon rod catch and salmon electro-fishing data, and a summary and discussion of the next phase. It also contains two tables with time series analysis on fry/parr numbers in representative section of the River Dart and figures with trends in fry/parrs numbers at juveniles electro-fishing sites. The section on salmon rod catch data includes trend analysis, cross-correlation of catches in different rivers and a general conclusion.

Population structure of king mackerel (Scomberomorus cavalla) around peninsular Florida, as revealed by microsatellite DNA

A total of 1006 king mackerel (Scomberomorus cavalla) representing 20 discrete samples collected between 1996 and 1998 along the east (Atlantic) and west (Gulf) coasts of Florida and the Florida Keys were assayed for allelic variation at seven nuclear-encoded microsatellites. No significant deviations from Hardy-Weinberg equilibrium expectations were found for six of the microsatellites, and genotypes at all microsatellites were independent. Allele distributions at each microsatellite were independent of sex and age of individuals. Homogeneity tests of spatial distributions of alleles at the microsatellites revealed two weakly divergent “genetic” subpopulations or stocks of king mackerel in Florida waters—one along the Atlantic coast and one along the Gulf coast. Homogeneity tests of allele distributions when samples were pooled along seasonal (temporal) boundaries, consistent with the temporal boundaries used currently for stock assessment and allocation of the king mackerel resource, were nonsignificant. The degree of genetic divergence between the two “genetic” stocks was small: on average, only 0.19% of the total genetic variance across all samples assayed occurred between the two regions. Cluster analysis, assignment tests, and spatial autocorrelation analysis did not generate patterns that were consistent with either geographic or spatial-temporal boundaries. King mackerel sampled from the Florida Keys could not be assigned unequivocally to either “genetic” stock. The genetic data were not consistent with current spatial-temporal boundaries employed in stock assessment and allocation of the king mackerel resource. The genetic differences between king mackerel in the Atlantic versus those in the Gulf most likely stem from reduced gene flow (migration) between the Atlantic and Gulf in relation to gene flow (migration) along the Atlantic and Gulf coasts of peninsular Florida. This difference is consistent with findings for other marine fishes where data indicate that the southern Florida peninsula serves (or has served) as a biogeographic boundary.

植物种群小尺度空间结构的数量分析

采用位置指数、分异指数、结构复杂性指数、Shannon-Wiener多样性指数以及Ripley的K-方程，探讨了华南海岸英罗港红树植物木榄种群的分布格局、胸围和树高分异以及冠层结构方面的空间异质性。结果表明，多数木榄种群呈现随机分布，其个体胸围和树高的分异程度较低;而少数木榄种群呈现集群分布，其个体胸围和树高的分异程度明显。采用地理信息系统对木榄种群冠层和空隙斑块进行多种水平和垂直尺度的分析，冠层与空隙斑块之间的镶嵌格局因种群而异，这种格局可基于树冠投影用Shannon-Wiener多样性指数进行定量描述。冠层结构的空问异质性随空间尺度而变化，但这种变化在一定尺度范围内保持相对的稳定。这一尺度范围可作为木榄红树林更新或生态管理单位的参考尺度。 采用多重分形理论和方法对华南海岸北海红树林区红树植物白骨壤幼苗种群的分布格局进行了分析。结果表明，白骨壤幼苗种群的分布格局具有多标量和多重分形行为。随着q值由-2增加到4，Dq值介于1.078-1.997，f(a)值介于0.402-1.678，a(q)值介于0.909-2.480。多重分形的参数值与幼苗种群的集聚强度密切相关。差值（D。-D1）和[f(-1) –D]。是度量格局空间异质性程度的有效指数。海洋水文周期性规律、不同面积大小的裸地、树冠的阻拦作用等是制约白骨壤幼苗种群多重分形格局形成的主要因子。 采用地统计学理论和方法，对北京东灵山落叶松和胡桃楸针阔混交林下的克隆植物绢毛匍匐委陵菜分株种群的统计变量和土壤变量的空间格局进行了分析和比较。结果表明，绢毛匍匐委陵菜分株种群各器官生物量以及分株数和叶数的空间格局具有较高程度的异质性。总生物量以及茎、叶和根生物量的半方差函数曲线为指数模型，叶柄生物量、分株数和叶数的为球状模型，叶片生物量的为线性无基台值模型，而匍匐茎生物量的为纯块金效应模型。除叶片和匍匐茎的生物量外，其它器官生物量以及分株数和叶数由空间自相关引起的空间异质性．SHA主要表现在120-3 50cm的尺度范围内，SHA占总空间异质性的比例在50%以上。生境中，各种土壤变量的空间格局也具有较高程度的异质性。土壤含水量、NO3-、NH4+、有机质、全磷和PO4(3-)的半方差函数曲线为球状模型，而全氮、K+和pH的为指数模型。土壤变量由空间自相关引起的空间异质性SHA主要表现在8-lOOcm的尺度范围内，SHA占总空间异质性的比例在68%以上。绢毛匍匐委陵菜分株种群空间格局的自相关尺度显著大于其生境中土壤变量空间格局的自相关尺度，表明绢毛匍匐委陵菜通过匍匐茎相互联结的克隆分株种群对异质性土壤资源表现出较大的缓冲能力。绢毛匍匐委陵菜分株数的空间格局与土壤的含水量和全氮空间格局之间在几乎所有尺度上的相关性都不显著，但与其它土壤变量空间格局之间都存在不同程度的相关性，其中与NH4+、pH、PO4(3-)和全磷空间格局之间的相关性尺度范围较为明显和较大。通过分株数、叶数和生物量分配的可塑性变化，绢毛匍匐委陵菜分株种群的空间格局与土壤资源的空间格局之间产生相互联系，并随空间尺度的变化会发生改变。

Stabilizing effect of surrounding gas flow on a plane liquid sheet

The stability of a plane liquid sheet is studied experimentally and theoretically, with an emphasis on the effect of the surrounding gas. Co-blowing with a gas velocity of the same order of magnitude as the liquid velocity is studied, in order to quantify its effect on the stability of the sheet. Experimental results are obtained for a water sheet in air at Reynolds number Rel = 3000 and Weber number W e = 300, based on the half-thickness of the sheet at the inlet, water mean velocity at the inlet, the surface tension between water and air and water density and viscosity. The sheet is excited with different frequencies at the inlet and the growth of the waves in the streamwise direction is measured. The growth rate curves of the disturbances for all air flow velocities under study are found to be within 20 % of the values obtained from a local spatial stability analysis, where water and air viscosities are taken into account, while previous results from literature assuming inviscid air overpredict the most unstable wavelength with a factor 3 and the growth rate with a factor 2. The effect of the air flow on the stability of the sheet is scrutinized numerically and it is concluded that the predicted disturbance growth scales with (i) the absolute velocity difference between water and air (inviscid effect) and (ii) the square root of the shear from air on the water surface (viscous effect).

Stabilizing effect of surrounding gas flow on a plane liquid sheet

The stability of a plane liquid sheet is studied experimentally and theoretically, with an emphasis on the effect of the surrounding gas. Co-blowing with a gas velocity of the same order of magnitude as the liquid velocity is studied, in order to quantify its effect on the stability of the sheet. Experimental results are obtained for a water sheet in air at Reynolds number Rel = 3000 and Weber number We = 300, based on the half-thickness of the sheet at the inlet, water mean velocity at the inlet, the surface tension between water and air and water density and viscosity. The sheet is excited with different frequencies at the inlet and the growth of the waves in the streamwise direction is measured. The growth rate curves of the disturbances for all air flow velocities under study are found to be within 20% of the values obtained from a local spatial stability analysis, where water and air viscosities are taken into account, while previous results from literature assuming inviscid air overpredict the most unstable wavelength with a factor 3 and the growth rate with a factor 2. The effect of the air flow on the stability of the sheet is scrutinized numerically and it is concluded that the predicted disturbance growth scales with (i) the absolute velocity difference between water and air (inviscid effect) and (ii) the square root of the shear from air on the water surface (viscous effect).

Interpreting the input admittance of violins and guitars

The most widespread vibration measurement on musical instrument bodies is of the point mobility at the bridge. Analysis of such measurements is presented, with a view to assessing what range of information could feasibly be extracted from the corpus of data. Analysis approaches include (1) pole-residue extraction; (2) damping trend analysis based on time decay information; (3) statistical estimates based on SEA power-balance and variance theory. Comparative results are shown for some key quantities. Damping trends with frequency are shown to have unexpectedly different forms for violins and for guitars. Linear averaging to estimate the "direct field" component gives a simple and clear visualisation of any local resonance behaviour near the bridge, such as the "bridge hill", and reveals some violins that show a double hill, while viols show only weak hills, and guitars none at all. © S. Hirzel Verlag · EAA.

Characterization of the porcine differentially expressed PDK4 gene and association with meat quality

To investigate the differential expression of genes in the skeletal muscle between Yorkshire and Chinese indigenous breed Meishan pigs, suppression subtractive hybridization was carried out and many genes were proved to be expressed significantly different in the two breeds. One gene highly expressed in Meishan but lowly expressed in Yorkshire specific library, shared strong homology with human pyruvate dehydrogenase kinase 4 (PDK4). Using semi-quantity and quantity PCR, We confirmed its differential expression between the two breeds. Temporal and spatial expression analysis indicated that porcine PDK4 gene is highly expressed in skeletal muscle and the highest in neonatal pigs. Complete cDNA cloning and sequence analysis revealed that porcine PDK4 gene contains an open reading frame of 1,221 bp. The deduced amino acid sequence showed conservation in evolution. A G/A mutation in intron 9 was identified and association analysis showed that it was significantly associated with intramuscular fat, muscle water content.

古龙咀周围海区沉积物粒度特征及海底地形变化

对古龙咀周围浅海区沉积物的粒度进行了测试与分析，结合相关的地质水文资料，探讨了海岸形态对沉积物粒度的影响。研究区表层沉积物平均粒径在海湾浅海区呈带状由岸向海变细，中等水深和岬角处分布着细粒区，向外海粒径相对变粗；除险岛湾砂质区外，分选差；偏态多数为正偏或近正态；整体峰形极窄，峰型多样。底质类型以粘土质粉砂和砂质粉砂为主，由东北经古龙咀岬角向西南形成S形粘土质粉砂分布带，险岛湾地区沉积物呈带状由砂逐渐过渡到粉砂。潮汐和波浪是本区沉积物输运的主要水动力，岬角的存在影响了沉积物粒度的分布。粒度趋势分析表明沉积物整体有向岬角汇聚的输运趋势。 对收集到基于1954年、1969年、1982年测量绘成的地形图水深数据进行数字化，结合2005年测量的水深数据，分别建立各时期DEM图，在此基础上分析研究区的地形特征。四个时期海底DEM呈现出大体一致的趋势，在险岛湾及白沙口海湾内为浅水区，水深值在-1～-4 m之间，深水区主要分布在南黄岛南端至古龙咀连线以南区域，呈扇形展布，水深由南黄岛两侧向中间逐渐加深，水深值在-10～ -17 m之间。从整体上看，研究区海底地形呈NW-SE方向逐渐加深。 将数字化后的水深数据统一校正到1956黄海高程系，分别建立DEM，运用GIS的栅格计算分析得出冲淤变化图。相关结果表明：1954～1969年研究区整体近岸为冲（险岛湾除外），离岸海域为淤；1969～1982年研究区总体处于弱淤积状态；1982-2005研究区海域近岸为淤，外海以弱冲刷状态为主。

喀斯特石漠化景观的空间因子分析及生态优化途径初探——以贵州清镇王家寨小流域为例

本文以西南喀斯特地区的王家寨小流域为研究对象，基于多源信息，依托遥感（RS）和地理信息系统（GIS）技术获取2005年该区石漠化景观分布格局信息，以此为基础进行石漠化景观分布指数（RLDI）、石漠化综合指数（RCI）、x-s平面分析模型以及三次曲线拟合等分析，旨在从小流域尺度上探讨石漠化景观在坡度、坡向、高程和与村庄距离等空间因子上的分布规律。 结果表明：无石漠化和轻度石漠化景观的RLDI曲线在坡度梯度上波动最显著（即其受坡度影响最大）；其他石漠化景观在坡向梯度上变化最明显。坡度上27º是RCI由增至减的临界点；各坡向中南、南东坡RCI值最高，北、北东、东坡次之；高程越高RCI越高；距村庄越远RCI越高。初步判断各空间因子对RCI的影响由强至弱依次为：坡度、坡向、高程以及与村庄的距离。 基于景观生态学理论，在对土地利用类型和地形（坡度、坡向）因子综合优先级评价的基础上，以治理石漠化、维护喀斯特景观生态安全和土地资源的可持续利用为目标，建立满足景观优化需要的生态恢复耗费表面模型，通过景观功能分区和生态廊道的构建，以及运用生态工程和植被进展演替相结合的具体措施，对小流域尺度上土地利用空间格局的优化和高效的生态恢复模式进行实践性探索。

左侧梭状回内文字的字形加工：中文正常阅读者，中文文盲、非中文母语被试的对比研究

Reading is an important human-specific skill obtained through extensive learning experience and is reliance on the ability to rapidly recognize single words. According to the behavioral studies, the most important stage of reading is the representation of “visual word form”, which is independent on surface visual features of the reading materials. The prelexical visual word form representation is characterized by the abstractive and highly effective and precise processing. Neuroimaging and neuropsychological studies have investigated the neural basis underlying the visual word form processing. On the basis of summary of the existing literature, the current thesis aimed to address three fundamental questions involving neural basis of word recognition. First, is there a dedicated neural network that is specialized for word recognition? Second, is the orthographic information represented in the putative word/character selective region (VWFA)? Third, what is the role of reading experience in the genesis of the VWFA, is experience a main driver to shape VWFA instead of evolutionary selectivity? Nineteen Chinese literate volunteers, 5 Chinese illiterates and 4 native English speakers participated in this study, and performed perceptual tasks during fMRI scanning. To address the first question, we compared the differential responses to three categories of visual objects, i.e., faces, line drawings of objects and Chinese characters, and defined the region of interesting (ROI) for the next experiment. To address the second question, Chinese character orthography was manipulated to reveal possible differential responses to real characters, false characters, radical combinations, and stroke combinations in the regions defined by the first experiment. To examine the role of reading experience in genesis of specialization for character, the responses for unfamiliar Chinese characters in Chinese illiterates and native English speakers were compared with that in the Chinese literates, and tracked the change in cortical activation after a short-term reading training in the illiterates. Data were analyzed in two dimensions. Both BOLD signal amplitude and spatial distribution pattern among multi-voxels were used to systematically investigate the responsiveness of the left fusiform gyrus to Chinese characters. Our results provide strong and clear evidence for the existence of functionally specialized regions in the human ventral occipital-temporal cortex. In the skilled readers a region specialized for written words could be consistently found in the lateral part of the left fusiform gyrus, line drawings in the median part and faces in the middle. Our results further show that spatial distribution analysis, a method that was not commonly used in neuroimaging of reading, appears to be a more effective measurement for category specialization for visual objects processing. Although we failed to provide evidence that VWFA processes orthographic information in terms of signal intensitiy, we do show that response pattern of real characters and radical collections in this area is different from that of false characters and random stroke combinations. Our last set of experiments suggests that the selective bias to reading material is clearly experience dependent. The response to unknown characters in both English speakers/readers and Chinese illiterates is fundamentally different from that of the skilled Chinese readers. The response pattern for unknown characters is more similar to that for line drawings rather as a weak version of character in skilled Chinese readers. Short-term training is not sufficient to produce VWFA bias even when tested with learned characters, rather the learned characters generated a overall upward shift of the activation of the left fusiform region. Formation of a dedicated region specialized for visual word/character might depend on long-term extensive reading experience, or there might be a critical period for reading acquisition.

3-D Vision and Figure-Ground Separation by Visual Cortex

A neural network theory of :3-D vision, called FACADE Theory, is described. The theory proposes a solution of the classical figure-ground problem for biological vision. It does so by suggesting how boundary representations and surface representations are formed within a Boundary Contour System (BCS) and a Feature Contour System (FCS). The BCS and FCS interact reciprocally to form 3-D boundary and surface representations that arc mutually consistent. Their interactions generate 3-D percepts wherein occluding and occluded object completed, and grouped. The theory clarifies how preattentive processes of 3-D perception and figure-ground separation interact reciprocally with attentive processes of spatial localization, object recognition, and visual search. A new theory of stereopsis is proposed that predicts how cells sensitive to multiple spatial frequencies, disparities, and orientations are combined by context-sensitive filtering, competition, and cooperation to form coherent BCS boundary segmentations. Several factors contribute to figure-ground pop-out, including: boundary contrast between spatially contiguous boundaries, whether due to scenic differences in luminance, color, spatial frequency, or disparity; partially ordered interactions from larger spatial scales and disparities to smaller scales and disparities; and surface filling-in restricted to regions surrounded by a connected boundary. Phenomena such as 3-D pop-out from a 2-D picture, DaVinci stereopsis, a 3-D neon color spreading, completion of partially occluded objects, and figure-ground reversals are analysed. The BCS and FCS sub-systems model aspects of how the two parvocellular cortical processing streams that join the Lateral Geniculate Nucleus to prestriate cortical area V4 interact to generate a multiplexed representation of Form-And-Color-And-Depth, or FACADE, within area V4. Area V4 is suggested to support figure-ground separation and to interact. with cortical mechanisms of spatial attention, attentive objcect learning, and visual search. Adaptive Resonance Theory (ART) mechanisms model aspects of how prestriate visual cortex interacts reciprocally with a visual object recognition system in inferotemporal cortex (IT) for purposes of attentive object learning and categorization. Object attention mechanisms of the What cortical processing stream through IT cortex are distinguished from spatial attention mechanisms of the Where cortical processing stream through parietal cortex. Parvocellular BCS and FCS signals interact with the model What stream. Parvocellular FCS and magnocellular Motion BCS signals interact with the model Where stream. Reciprocal interactions between these visual, What, and Where mechanisms arc used to discuss data about visual search and saccadic eye movements, including fast search of conjunctive targets, search of 3-D surfaces, selective search of like-colored targets, attentive tracking of multi-element groupings, and recursive search of simultaneously presented targets.

A Solution of the Figure-ground Problem for Biological Vision

A neural network model of 3-D visual perception and figure-ground separation by visual cortex is introduced. The theory provides a unified explanation of how a 2-D image may generate a 3-D percept; how figures pop-out from cluttered backgrounds; how spatially sparse disparity cues can generate continuous surface representations at different perceived depths; how representations of occluded regions can be completed and recognized without usually being seen; how occluded regions can sometimes be seen during percepts of transparency; how high spatial frequency parts of an image may appear closer than low spatial frequency parts; how sharp targets are detected better against a figure and blurred targets are detector better against a background; how low spatial frequency parts of an image may be fused while high spatial frequency parts are rivalrous; how sparse blue cones can generate vivid blue surface percepts; how 3-D neon color spreading, visual phantoms, and tissue contrast percepts are generated; how conjunctions of color-and-depth may rapidly pop-out during visual search. These explanations arise derived from an ecological analysis of how monocularly viewed parts of an image inherit the appropriate depth from contiguous binocularly viewed parts, as during DaVinci stereopsis. The model predicts the functional role and ordering of multiple interactions within and between the two parvocellular processing streams that join LGN to prestriate area V4. Interactions from cells representing larger scales and disparities to cells representing smaller scales and disparities are of particular importance.

Invasive fungal infections among organ transplant recipients: results of the Transplant-Associated Infection Surveillance Network (TRANSNET).

BACKGROUND: Invasive fungal infections (IFIs) are a major cause of morbidity and mortality among organ transplant recipients. Multicenter prospective surveillance data to determine disease burden and secular trends are lacking. METHODS: The Transplant-Associated Infection Surveillance Network (TRANSNET) is a consortium of 23 US transplant centers, including 15 that contributed to the organ transplant recipient dataset. We prospectively identified IFIs among organ transplant recipients from March, 2001 through March, 2006 at these sites. To explore trends, we calculated the 12-month cumulative incidence among 9 sequential cohorts. RESULTS: During the surveillance period, 1208 IFIs were identified among 1063 organ transplant recipients. The most common IFIs were invasive candidiasis (53%), invasive aspergillosis (19%), cryptococcosis (8%), non-Aspergillus molds (8%), endemic fungi (5%), and zygomycosis (2%). Median time to onset of candidiasis, aspergillosis, and cryptococcosis was 103, 184, and 575 days, respectively. Among a cohort of 16,808 patients who underwent transplantation between March 2001 and September 2005 and were followed through March 2006, a total of 729 IFIs were reported among 633 persons. One-year cumulative incidences of the first IFI were 11.6%, 8.6%, 4.7%, 4.0%, 3.4%, and 1.3% for small bowel, lung, liver, heart, pancreas, and kidney transplant recipients, respectively. One-year incidence was highest for invasive candidiasis (1.95%) and aspergillosis (0.65%). Trend analysis showed a slight increase in cumulative incidence from 2002 to 2005. CONCLUSIONS: We detected a slight increase in IFIs during the surveillance period. These data provide important insights into the timing and incidence of IFIs among organ transplant recipients, which can help to focus effective prevention and treatment strategies.

Policy-centric integration and dynamic composition of autonomic computing techniques

This paper presents innovative work in the development of policy-based autonomic computing. The core of the work is a powerful and flexible policy-expression language AGILE, which facilitates run-time adaptable policy configuration of autonomic systems. AGILE also serves as an integrating platform for other self-management technologies including signal processing, automated trend analysis and utility functions. Each of these technologies has specific advantages and applicability to different types of dynamic adaptation. The AGILE platform enables seamless interoperability of the different technologies to each perform various aspects of self-management within a single application. The various technologies are implemented as object components. Self-management behaviour is specified using the policy language semantics to bind the various components together as required. Since the policy semantics support run-time re-configuration, the self-management architecture is dynamically composable. Additional benefits include the standardisation of the application programmer interface, terminology and semantics, and only a single point of embedding is required.