Prevalence and in vitro antifungal susceptibility of Candida spp isolated from clinical specimens in São Paulo, Brazil

We examined the prevalence and the in vitro susceptibility to antifungal drugs of Candida spp isolated from clinical specimens at our university hospital in São Paulo, Brazil. Among 6,417 samples studied, positive cultures, were obtained from 222 (3.5%) most of them (68%) from the pediatric unit and nursery. Candida albicans and Candida parapsilosis were the most frequent species and the susceptibility patterns of a panel of 130 isolates to amphotericin B, ketoconazole and fluconazole. showed that the order of antifungal efficacy was amphotericin B > ketoconazole > fluconazole.

Rapid molecular diagnosis of tuberculosis and other mycobacteriosis in smear-negative clinical specimens

Delay in diagnosis of pulmonary and other forms of tuberculosis (TB) can be fatal, particularly in HIV-infected patients. Hence, techniques based on nucleic acid amplification, which are both rapid and of high specificity and sensitivity, are now widely used and recommended for laboratories that diagnose TB. In the present study, diagnostic methods based on mycobacterial DNA amplification were evaluated in comparative trials alongside tradicional bacterial methods, using negative smear samples from patients with clinically-suspected TB (sputum samples from 25 patients with suspected pulmonary TB, urine samples from two patients with suspected renal TB and cerebrospinal fluid samples from one patient with suspected meningeal TB). A specificity of 100% was achieved with DNA amplification methods and tradicional culture/identification methods, in relation to clinical findings and treatment results. For the smear-negative sputa, conventional PCR for M. tuberculosis was positive in 62% of suspected lung TB case, showing the same sensitivity as bacterial identification. Both techniques failed in the detection of extra-pulmonary samples. Nested PCR showed, after species-specific amplification, a sensitivity of 100% for M. avium and 85% for M. tuberculosis. For extra-pulmonary smear-negative samples, only Nested PCR detected M. tuberculosis and all cases were confirmed clinically. Nested PCR, in which two-step amplification reactions are performed, can identify the two most important mycobacteria in human pathology quickly and directly from clinical spicimens.

Fatigue apparatus for geometrically complex non-standardized specimens

Standard Test Methods (e.g. ASTM, DIN) for materials characterization in general, and for fatigue in particular, do not contemplate specimens with complex geometries, as well as the combination of axial and in-plane bending loads in their methodologies. The present study refers to some patents and the new configuration or configurations of specimens (non-standardized by the status quo of test methods) and a device developed to induce axial and bending combined forces resultants from axial loads applied by any one test equipment (dynamic or monotonic) which possesses such limitation, towards obtaining more realistic results on the fatigue behavior, or even basic mechanical properties, from geometrically complex structures. Motivated by a specific and geometrically complex aeronautic structure (motor-cradle), non-standardized welded tubular specimens made from AISI 4130 steel were fatigue-tested at room temperature, by using a constant amplitude sinusoidal load of 20 Hz frequency, load ratio R = 0.1 with and without the above referred auxiliary fatigue apparatus. The results showed the fatigue apparatus was efficient for introducing higher stress concentration factor at the welded specimen joints, consequently reducing the fatigue strength when compared to other conditions. From the obtained results it is possible to infer that with small modifications the proposed apparatus will be capable to test a great variety of specimen configurations such as: squared tubes and plates with welded or melted junctions, as well as other materials such as aluminum, titanium, composites, polymeric, plastics, etc. © 2009 Bentham Science Publishers Ltd.

Detection of SPM and IMP metallo-β-lactamases in clinical specimens of Pseudomonas aeruginosa from a Brazilian public tertiary hospital

Phenotypic and genotypic SPM and IMP metallo-β-lactamases (MBL) detection and also the determination of minimal inhibitory concentrations (MIC) to imipenem, meropenem and ceftazidime were evaluated in 47 multidrug-resistant Pseudomonas aeruginosa isolates from clinical specimens. Polymerase chain reaction detected 14 positive samples to either blaSPM or blaIMP genes, while the best phenotypic assay (ceftazidime substrate and mercaptopropionic acid inhibitor) detected 13 of these samples. Imipenem, meropenem and ceftazidime MICs were higher for MBL positive compared to MBL negative isolates. We describe here the SPM and IMP MBL findings in clinical specimens of P. aeruginosa from the University Hospital of Botucatu Medical School, São Paulo, Brazil, that reinforce local studies showing the high spreading of blaSPM and blaIMP genes among Brazilian clinical isolates. © 2011 Elsevier Editora Ltda.

Revision of Nathan Banks type specimens of Bdellidae Dugès (Acari: Trombidiformes) of the Museum of Comparative Zoology, Cambridge

In this article, seven Bdellidae Dugès (Acari: Trombidiformes) of the Museum of Comparative Zoology, originally described by Nathan Banks are studied: Cyta americana (Banks, 1902), Bdella tenella Banks, 1896, Bdella utilis Banks, 1914, Bdella californica Banks, 1904, Bdella cardinalis Banks, 1894, Bdella peregrina Banks, 1894 and Bdella brevitarsis Banks. Bdella tenella and Bdella californica are transferred to the genera Spinibdella and Bdellodes, respectively. Bdella brevitarsis, previously a nomen nudum, is herein described for the first time under the genus Hexabdella. http://zoobank.org/urn:lsid: zoobank.org:pub:A18C8C10-8C8A-4873-AF0B-D1A9164CD7E8 © 2013 Copyright 2013 Taylor & Francis.

Effects of extreme cooling methods on mechanical properties and shear bond strength of bilayered porcelain/3Y-TZP specimens

Objectives: This study investigated the effect of extreme cooling methods on the flexural strength, reliability and shear bond strength of veneer porcelain for zirconia. Methods: Vita VM9 porcelain was sintered on zirconia bar specimens and cooled by one of the following methods: inside a switched-off furnace (slow), at room temperature (normal) or immediately by compressed air (fast). Three-point flexural strength tests (FS) were performed on specimens with porcelain under tension (PT, n = 30) and zirconia under tension (ZT, n = 30). Shear bond strength tests (SBS, n = 15) were performed on cylindrical blocks of porcelain, which were applied on zirconia plates. Data were submitted to one-way ANOVA and Tukey's post hoc tests (p < 0.05). Weibull analysis was performed on the PT and ZT configurations. Results: One-way ANOVA for the PT configuration was significant, and Tukey's test revealed that fast cooling leads to significantly higher values (p < 0.01) than the other cooling methods. One-way ANOVA for the ZT configuration was not significant (p = 0.06). Weibull analysis showed that normal cooling had slightly higher reliability for both the PT and ZT configurations. Statistical tests showed that slow cooling decreased the SBS value (p < 0.01) and showed less adhesive fracture modes than the other cooling methods. Clinical Significance: Slow cooling seems to affect the veneer resistance and adhesion to the zirconia core; however, the reliability of fast cooling was slightly lower than that of the other methods. © 2013 Elsevier Ltd.

Development and validation of a D-loop mtDNA SNP assay for the screening of specimens in forensic casework

Mitochondrial DNA (mtDNA) analysis is usually a last resort in routine forensic DNA casework. However, it has become a powerful tool for the analysis of highly degraded samples or samples containing too little or no nuclear DNA, such as old bones and hair shafts. The gold standard methodology still constitutes the direct sequencing of polymerase chain reaction (PCR) products or cloned amplicons from the HVS-1 and HVS-2 (hypervariable segment) control region segments. Identifications using mtDNA are time consuming, expensive and can be very complex, depending on the amount and nature of the material being tested. The main goal of this work is to develop a less labour-intensive and less expensive screening method for mtDNA analysis, in order to aid in the exclusion of non-matching samples and as a presumptive test prior to final confirmatory DNA sequencing. We have selected 14 highly discriminatory single nucleotide polymorphisms (SNPs) based on simulations performed by Salas and Amigo (2010) [1] to be typed using SNaPShotTM (Applied Biosystems, Foster City, CA, USA). The assay was validated by typing more than 100 HVS-1/HVS-2 sequenced samples. No differences were observed between the SNP typing and DNA sequencing when results were compared, with the exception of allelic dropouts observed in a few haplotypes. Haplotype diversity simulations were performed using 172 mtDNA sequences representative of the Brazilian population and a score of 0.9794 was obtained when the 14 SNPs were used, showing that the theoretical prediction approach for the selection of highly discriminatory SNPs suggested by Salas and Amigo (2010) [1] was confirmed in the population studied. As the main goal of the work is to develop a screening assay to skip the sequencing of all samples in a particular case, a pair-wise comparison of the sequences was done using the selected SNPs. When both HVS-1/HVS-2 SNPs were used for simulations, at least two differences were observed in 93.2% of the comparisons performed. The assay was validated with casework samples. Results show that the method is straightforward and can be used for exclusionary purposes, saving time and laboratory resources. The assay confirms the theoretic prediction suggested by Salas and Amigo (2010) [1]. All forensic advantages, such as high sensitivity and power of discrimination, as also the disadvantages, such as the occurrence of allele dropouts, are discussed throughout the article. © 2013 Elsevier B.V.

A espermiogênese e a ultraestrutura dos espermatozóides de representantes de alguns gêneros incertae sedis em characidae, anteriormente alocados em tetragonopterinae(Teleostei: Characiformes) com ênfase em Moenkhausia, e suas aplicações filogenéticas

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Helmintofauna Columba livia (Aves, Columbidae) procedentes do Estado de São Paulo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Dinâmica populacional do pargo, Lutjanus purpureus Poey, 1875 (Pisces: Lutjanidae) na plataforma norte do Brasil

O crescimento, a mortalidade, biometria e a reprodução do pargo Lutjanus purpureus foram estudadas a partir de amostras obtidas nos desembarques da frota comercial capturadas com pargueira na costa norte do Brasil no âmbito do programa REVIZEE e do Projeto biologia e pesca do pargo no norte do Brasil do CEPNOR/IBAMA. Dados de comprimentos total e zoológico de aproximadamente 500 indivíduos foram coletados aleatoriamente e mensalmente nos desembarques dos municípios de Belém, Vigia e Bragança, no período de janeiro de 1999 a dezembro de 2000. E para realizar estudos de reprodução e biometria foram obtidas subamostras mensais de 150 indivíduos em abril de 1998 a janeiro de 2000. No laboratório do CEPNOR/IBAMA foram realizadas as biometrias, sexagem e identificados os estágios de maturação gonadal. As amostras totalizaram 16.733 indivíduos com percentuais superiores a 50% de indivíduos jovens. A amplitude de classe total variou de 13 a 112 cm de comprimento e as médias de comprimentos foram de 45,72 cm e 51,91 cm, respectivamente para o ano de 1999 e 2000. As relações morfométricas e as relações peso/comprimento apresentaram alometria positiva. E a relação peso/comprimento para macho e fêmea diferem significativamente entre si, pelo teste de Student, bilateral, com alfa = 0,05. A reprodução foi estudada determinando a proporção sexual através do teste quiquadrado, o tamanho de primeira maturação e o período de desova, que foi analisado pela variação temporal das freqüências dos estágios gonadais e relação gonadossomática. Para todo o período estudado foi verificada a predominância de fêmeas e nas análises mensais apenas nos meses de abril de 1998, maio e junho de 1999 não apresentaram diferenças significativas entre os sexos. Na proporção sexual por classe de comprimento a predominância de fêmeas foi altamente significativa de 28 a 45 cm. A classe de comprimento total do tamanho de primeira maturação foi estimado 43 a 46 cm para fêmeas pelo método da extrapolação gráfica e de 43,67 cm pelo ajuste da ogiva de Galton. E o período reprodutivo foi observado em dois picos, sendo um intenso no segundo trimestre, com maior amplitude no mês de maio/1998 e um mais reduzido no quarto trimestre. Os parâmetros de crescimento foram estimados pelo sistema ELEFAN I, método de Bhattacharya, Gulland & Holt e Appeldoorn no programa Fisat. O método de Appeldoorn apresentou o melhor ajuste para a espécie com o valor de L= 115 cm K= 0,091ano-1 , que determinou a equação do crescimento de von Bertalanffy Lt = 115 (1-e 0,091tto). A mortalidade natural foi estimada em 0,25 ano-1 e 0,31 ano-1 pelas equações de Pauly e Rikhter & Efanov respectivamente. A mortalidade total estimada pelos métodos do comprimento convertido em curva de captura linearizada e Berverton & Holt atingiu valores de 0,59; 0,664 respectivamente. A mortalidade por pesca e a taxa de explotação também foram calculados. Os resultados foram F = 0,34 ano 1 e E = 0,57. A longevidade estimada pela fórmula de Taylor foi de 33 anos. O pargo apresenta crescimento lento e vida longa com desova contínua e periódica. A pesca na costa norte do Brasil incide em percentuais elevados de jovens o que pode contribuir para um estado de sobrepesca de crescimento, comprometendo assim a sustentabilidade da espécie e da atividade pesqueira na região norte. É imprescindível adotar medidas de ordenamento para a pesca do pargo, principalmente no que diz respeito ao tamanho mínimo de captura.

Taxonomic implications of molecular studies on Northern Brazilian Teredinidae (Mollusca: Bivalvia) specimens

The current taxonomy of the Teredinidae (shipworms) is wholly based on morphology and up to now no molecular studies of the phylogeny of this group have been published. In the present study the relationships between four genera of the subfamilies Teredininae and Bankiinae were established and the efficiency of the 16S rRNA gene in characterizing four Teredinidae species was tested. Phylogenetic trees support the grouping of Bankia fimbriatula with Nausitora fusticula and of Neoteredo reynei with Psiloteredo healdi, but the genetic distances do not justify the classification of these species into two distinct subfamilies. The results show that B. fimbriatula, N. reynei and P. healdi specimens from the coast of the Brazilian state of Pará have five distinct 16S rRNA haplotypes, with one N. reynei haplotype differing from the other haplotypes in respect to at least seven sequences sites, indicating the existence of two very distinct sympatric lineages.

Properties of Mortar Using Cubes, Prism Halves, and Cylinder Specimens

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virginia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Biogeography, vicariance and conservation of snakes of the neglected and endangered Caatinga region, north-eastern Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)