Cultivating C4 crops in a changing climate: sugarcane in Ghana

Over the next few decades, it is expected that increasing fossil fuel prices will lead to a proliferation of energy crop cultivation initiatives. The environmental sustainability of these activities is thus a pressing issue—particularly when they take place in vulnerable regions, such as West Africa. In more general terms, the effect of increased CO2 concentrations and higher temperatures on biomass production and evapotranspiration affects the evolution of the global hydrological and carbon cycles. Investigating these processes for a C4 crop, such as sugarcane, thus provides an opportunity both to extend our understanding of the impact of climate change, and to assess our capacity to model the underpinning processes. This paper applies a process-based crop model to sugarcane in Ghana (where cultivation is planned), and the São Paulo region of Brazil (which has a well-established sugarcane industry). We show that, in the Daka River region of Ghana, provided there is sufficient irrigation, it is possible to generate approximately 75% of the yield achieved in the São Paulo region. In the final part of the study, the production of sugarcane under an idealized temperature increase climate change scenario is explored. It is shown that doubling CO2 mitigates the degree of water stress associated with a 4 °C increase in temperature.

A Brassica exon array for whole-transcript gene expression profiling

Affymetrix GeneChip (R) arrays are used widely to study transcriptional changes in response to developmental and environmental stimuli. GeneChip (R) arrays comprise multiple 25-mer oligonucleotide probes per gene and retain certain advantages over direct sequencing. For plants, there are several public GeneChip (R) arrays whose probes are localised primarily in 39 exons. Plant whole-transcript (WT) GeneChip (R) arrays are not yet publicly available, although WT resolution is needed to study complex crop genomes such as Brassica, which are typified by segmental duplications containing paralogous genes and/or allopolyploidy. Available sequence data were sampled from the Brassica A and C genomes, and 142,997 gene models identified. The assembled gene models were then used to establish a comprehensive public WT exon array for transcriptomics studies. The Affymetrix GeneChip (R) Brassica Exon 1.0 ST Array is a 5 mu M feature size array, containing 2.4 million 25-base oligonucleotide probes representing 135,201 gene models, with 15 probes per gene distributed among exons. Discrimination of the gene models was based on an E-value cut-off of 1E(-5), with <= 98 sequence identity. The 135 k Brassica Exon Array was validated by quantifying transcriptome differences between leaf and root tissue from a reference Brassica rapa line (R-o-18), and categorisation by Gene Ontologies (GO) based on gene orthology with Arabidopsis thaliana. Technical validation involved comparison of the exon array with a 60-mer array platform using the same starting RNA samples. The 135 k Brassica Exon Array is a robust platform. All data relating to the array design and probe identities are available in the public domain and are curated within the BrassEnsembl genome viewer at http://www.brassica.info/BrassEnsembl/index.html.

Contribution of insect pollinators to crop yield and quality varies with agricultural intensification

Background: Up to 75% of crop species benefit at least to some degree from animal pollination for fruit or seed set and yield. However, basic information on the level of pollinator dependence and pollinator contribution to yield is lacking for many crops. Even less is known about how insect pollination affects crop quality. Given that habitat loss and agricultural intensification are known to decrease pollinator richness and abundance, there is a need to assess the consequences for different components of crop production. Methods: We used pollination exclusion on flowers or inflorescences on a whole plant basis to assess the contribution of insect pollination to crop yield and quality in four flowering crops (spring oilseed rape, field bean, strawberry, and buckwheat) located in four regions of Europe. For each crop, we recorded abundance and species richness of flower visiting insects in ten fields located along a gradient fromsimple to heterogeneous landscapes. Results: Insect pollination enhanced average crop yield between 18 and 71% depending on the crop. Yield quality was also enhanced in most crops. For instance, oilseed rape had higher oil and lower chlorophyll contents when adequately pollinated, the proportion of empty seeds decreased in buckwheat, and strawberries’ commercial grade improved; however, we did not find higher nitrogen content in open pollinated field beans. Complex landscapes had a higher overall species richness of wild pollinators across crops, but visitation rates were only higher in complex landscapes for some crops. On the contrary, the overall yield was consistently enhanced by higher visitation rates, but not by higher pollinator richness. Discussion. For the four crops in this study, there is clear benefit delivered by pollinators on yield quantity and/or quality, but it is not maximized under current agricultural intensification. Honeybees, the most abundant pollinator, might partially compensate the loss of wild pollinators in some areas, but our results suggest the need of landscape-scale actions to enhance wild pollinator populations.

Climatic impacts of land-use change due to crop yield increases and a universal carbon tax from a scenario model*

Future land cover will have a significant impact on climate and is strongly influenced by the extent of agricultural land use. Differing assumptions of crop yield increase and carbon pricing mitigation strategies affect projected expansion of agricultural land in future scenarios. In the representative concentration pathway 4.5 (RCP4.5) from phase 5 of the Coupled Model Intercomparison Project (CMIP5), the carbon effects of these land cover changes are included, although the biogeophysical effects are not. The afforestation in RCP4.5 has important biogeophysical impacts on climate, in addition to the land carbon changes, which are directly related to the assumption of crop yield increase and the universal carbon tax. To investigate the biogeophysical climatic impact of combinations of agricultural crop yield increases and carbon pricing mitigation, five scenarios of land-use change based on RCP4.5 are used as inputs to an earth system model [Hadley Centre Global Environment Model, version 2-Earth System (HadGEM2-ES)]. In the scenario with the greatest increase in agricultural land (as a result of no increase in crop yield and no climate mitigation) there is a significant -0.49 K worldwide cooling by 2100 compared to a control scenario with no land-use change. Regional cooling is up to -2.2 K annually in northeastern Asia. Including carbon feedbacks from the land-use change gives a small global cooling of -0.067 K. This work shows that there are significant impacts from biogeophysical land-use changes caused by assumptions of crop yield and carbon mitigation, which mean that land carbon is not the whole story. It also elucidates the potential conflict between cooling from biogeophysical climate effects of land-use change and wider environmental aims.

Elevated CO(2) increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane

Because of the economical relevance of sugarcane and its high potential as a source of biofuel, it is important to understand how this crop will respond to the foreseen increase in atmospheric [CO(2)]. The effects of increased [CO(2)] on photosynthesis, development and carbohydrate metabolism were studied in sugarcane (Saccharum ssp.). Plants were grown at ambient (similar to 370 ppm) and elevated (similar to 720 ppm) [CO(2)] during 50 weeks in open-top chambers. The plants grown under elevated CO(2) showed, at the end of such period, an increase of about 30% in photosynthesis and 17% in height, and accumulated 40% more biomass in comparison with the plants grown at ambient [CO(2)]. These plants also had lower stomatal conductance and transpiration rates (-37 and -32%, respectively), and higher water-use efficiency (c.a. 62%). cDNA microarray analyses revealed a differential expression of 35 genes on the leaves (14 repressed and 22 induced) by elevated CO(2). The latter are mainly related to photosynthesis and development. Industrial productivity analysis showed an increase of about 29% in sucrose content. These data suggest that sugarcane crops increase productivity in higher [CO(2)], and that this might be related, as previously observed for maize and sorghum, to transient drought stress.

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane

P>Modern sugarcane (Saccharum spp.) is the leading sugar crop and a primary energy crop. It has the highest level of `vertical` redundancy (2n = 12x = 120) of all polyploid plants studied to date. It was produced about a century ago through hybridization between two autopolyploid species, namely S. officinarum and S. spontaneum. In order to investigate the genome dynamics in this highly polyploid context, we sequenced and compared seven hom(oe)ologous haplotypes (bacterial artificial chromosome clones). Our analysis revealed a high level of gene retention and colinearity, as well as high gene structure and sequence conservation, with an average sequence divergence of 4% for exons. Remarkably, all of the hom(oe)ologous genes were predicted as being functional (except for one gene fragment) and showed signs of evolving under purifying selection, with the exception of genes within segmental duplications. By contrast, transposable elements displayed a general absence of colinearity among hom(oe)ologous haplotypes and appeared to have undergone dynamic expansion in Saccharum, compared with sorghum, its close relative in the Andropogonea tribe. These results reinforce the general trend emerging from recent studies indicating the diverse and nuanced effect of polyploidy on genome dynamics.

Períodos de interferência das plantas daninhas na cultura da cana-de-açúcar: II - capim-braquiária (brachiaria decumbens)

Um experimento foi conduzido em Olímpia-SP, com o objetivo de avaliar os efeitos de períodos de convivência e controle das plantas daninhas na produtividade da cultura da cana-de-açúcar. A cana foi plantada em maio de 1995, sendo colhida 15 meses após; a cultura anterior havia sido pastagem de Brachiaria decumbens e, em conseqüência, esta espécie foi a principal planta daninha presente na área experimental. Essa época de plantio é caracterizada por grande deficiência hídrica; mesmo assim, a população de B. decumbens tendeu a apresentar acúmulo crescente de biomassa seca durante todo o período de avaliação. Esse comportamento proporcionou intensa interferência na cultura da cana-de-açúcar, ocasionando 82% de redução na produtividade de colmos. A cultura pôde conviver com a comunidade infestante até 89 dias após o plantio (DAP), sem sofrer redução significativa na produtividade. O período mínimo de controle, para assegurar a máxima produtividade, foi de 138 DAP. Dessa forma, o controle das plantas daninhas foi crítico no período compreendido entre 89 e 138 DAP.

The effects of the coexistence of weed communities on table beet yield during early crop development

Objetivando avaliar efeitos de períodos de infestação inicial na comunidade infestante e na produtividade da beterraba em sistema de semeadura direta e transplantio, conduziu-se um experimento em delineamento de blocos casualizados, esquema fatorial 2 x 13. Métodos de semeadura direta e transplante de mudas foram avaliados dentro de 13 períodos semanais crescentes de infestação. Importância relativa, densidade e matéria seca acumulada pelas plantas daninhas foram analisadas por regressão não-linear, assim como produtividade e estande da cultura de beterraba, que foram submetidos à análise de variância. Amaranthus viridis, Coronopus didymus, Cyperus rotundus, Digitaria nuda, Galinsoga parviflora e Nicandra physaloides foram as plantas daninhas mais importantes, destacando-se C. didymus. O acúmulo de matéria seca das plantas daninhas foi maior na cultura em semeadura direta, embora a densidade de plantas daninhas tenha sido mais alta em sistema de transplantio. A produtividade da beterraba transplantada foi maior que a da semeadura direta no tratamento livre de plantas daninhas. A convivência das plantas daninhas com a cultura pode permanecer por quatro e sete semanas depois da semeadura/transplantio, respectivamente, antes de reduzir a produtividade. A cultura em sistema de semeadura direta foi mais susceptível à interferência das plantas daninhas que a cultura sob sistema de transplantio.

Fractal dimension and anisotropy of soil CO2 emission in a mechanically harvested sugarcane production area

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Control of Brachiaria decumbens and Panicum maximum by S-metolachlor as influenced by the occurrence of rain and amount of sugarcane straw on the soil

Com o objetivo de estudar o controle em pré-emergência de Brachiaria decumbens e Panicum maximum pelo herbicida S-metolachlor em função do intervalo de tempo entre a aplicação e a ocorrência de chuva e da quantidade de palha de cana-de-açúcar na superfície do solo, dois experimentos foram desenvolvidos em vasos mantidos em casa de vegetação. No primeiro, foram estudadas cinco quantidades de palha sobre o solo (0, 3, 6, 10 e 15 t ha-1) e cinco dosagens de S-metolachlor (0; 0,96; 1,44; 1,92 e 2,40 kg ha-1). No outro, foram avaliadas duas quantidades de palha sobre o solo (0 e 10 t ha-1) e sete intervalos de tempo entre a aplicação de S-metolachlor e a simulação de chuva (1 dia antes; logo após; 4, 8, 12, 16 e 20 dias após a aplicação). As dosagens de S-metolachlor não foram afetadas pelos níveis de palha na superfície do solo. Além disso, sem a manutenção de palha sobre o solo, o controle das plantas daninhas pelo herbicida S-metolachlor não foi influenciado pelos intervalos de tempo entre a aplicação e a simulação de chuva, até 20 dias. Com 10 t ha-1 de palha, o controle de B. decumbens e P. maximum pelo S-metolachlor não foi prejudicado quando choveu até 12 dias da sua aplicação ou um dia antes, mas, nesse caso apenas para P. maximum.

S-metolachlor efficacy on the control of Brachiaria decumbens, Digitaria horizontalis, and Panicum maximum in mechanically green harvested sugarcane

Objetivou-se com este trabalho avaliar o controle em pré-emergência de Brachiaria decumbens, Digitaria horizontalis e Panicum maximum pelo herbicida S-metolachlor aplicado em pré-emergência em área de cana-de-açúcar colhida mecanicamente sem queima prévia das plantas, com e sem palha sobre o solo. O delineamento experimental foi o de blocos ao acaso, com quatro repetições, em esquema de parcela subdividida 7 x 2. Nas parcelas, foram estudados cinco tratamentos de herbicidas (S-metolachlor a 1,44, 1,92 e 2,40 kg ha-1; clomazone a 1,20 kg ha-1; e isoxaflutole a 0,188 kg ha-1) e duas testemunhas sem aplicação. Nas subparcelas, foi avaliada a manutenção ou não da palha de cana na superfície do solo. A eficácia do herbicida S-metolachlor não foi prejudicada pela presença de 14 ou 20 t ha-1 de palha de cana sobre o solo. Com a manutenção da palha, a dosagem de S-metolachlor para o controle adequado das plantas daninhas foi de 1,44kgha-1. No ambiente sem palha, o S-metolachlor controlou B. decumbens, D. horizontalis e P. maximum nas dosagens de 1.92, 1.44 e 1.92kgha-1, respectivamente. Nas duas condições de palha, os herbicidas clomazone e isoxaflutole foram eficazes para as espécies estudadas. O S-metolachlor não causou nenhum sintoma visível de intoxicação à cana-de-açúcar. O clomazone e o isoxaflutole ocasionaram injúrias visuais às plantas de cana. Os herbicidas estudados não afetaram o número de colmos viáveis por m², a altura e o diâmetro de colmos.

Impact of successive sugarcane harvests and trash management practices on soil microbiological properties

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Soil uses in the sugarcane fallow period to improve chemical and physical properties of two latosols (oxisols)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

SUGARCANE BAGASSE PULPING and BLEACHING: THERMAL and CHEMICAL CHARACTERIZATION

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Infecção mista pelo Sugarcane mosaic virus e Maize rayado fino virus provoca danos na cultura do milho no estado de São Paulo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)