Genome-wide identification and expression analysis of the NF-Y family of transcription factors in Triticum aestivum

Nuclear Factor Y (NF-Y) is a trimeric complex that binds to the CCAAT box, a ubiquitous eukaryotic promoter element. The three subunits NF-YA, NF-YB and NF-YC are represented by single genes in yeast and mammals. However, in model plant species (Arabidopsis and rice) multiple genes encode each subunit providing the impetus for the investigation of the NF-Y transcription factor family in wheat. A total of 37 NF-Y and Dr1 genes (10 NF-YA, 11 NF-YB, 14 NF-YC and 2 Dr1) in Triticum aestivum were identified in the global DNA databases by computational analysis in this study. Each of the wheat NF-Y subunit families could be further divided into 4-5 clades based on their conserved core region sequences. Several conserved motifs outside of the NF-Y core regions were also identified by comparison of NF-Y members from wheat, rice and Arabidopsis. Quantitative RT-PCR analysis revealed that some of the wheat NF-Y genes were expressed ubiquitously, while others were expressed in an organ-specific manner. In particular, each TaNF-Y subunit family had members that were expressed predominantly in the endosperm. The expression of nine NF-Y and two Dr1 genes in wheat leaves appeared to be responsive to drought stress. Three of these genes were up-regulated under drought conditions, indicating that these members of the NF-Y and Dr1 families are potentially involved in plant drought adaptation. The combined expression and phylogenetic analyses revealed that members within the same phylogenetic clade generally shared a similar expression profile. Organ-specific expression and differential response to drought indicate a plant-specific biological role for various members of this transcription factor family.

TaNF-YC11, one of the light-upregulated NF-YC members in Triticum aestivum, is co-regulated with photosynthesis-related genes

NF-Y is a heterotrimeric transcription factor complex. Each of the NF-Y subunits (NF-YA, NF-YB and NF-YC) in plants is encoded by multiple genes. Quantitative RT-PCR analysis revealed that five wheat NF-YC members (TaNF-YC5, 8, 9, 11 & 12) were upregulated by light in both the leaf and seedling shoot. Co-expression analysis of Affymetrix wheat genome array datasets revealed that transcript levels of a large number of genes were consistently correlated with those of the TaNF-YC11 and TaNF-YC8 genes in 3-4 separate Affymetrix array datasets. TaNF-YC11-correlated transcripts were significantly enriched with the Gene Ontology term photosynthesis. Sequence analysis in the promoters of TaNF-YC11-correlated genes revealed the presence of putative NF-Y complex binding sites (CCAAT motifs). Quantitative RT-PCR analysis of a subset of potential TaNF-YC11 target genes showed that ten out of the thirteen genes were also light-upregulated in both the leaf and seedling shoot and had significantly correlated expression profiles with TaNF-YC11. The potential target genes for TaNF-YC11 include subunit members from all four thylakoid membrane bound complexes required for the conversion of solar energy into chemical energy and rate limiting enzymes in the Calvin cycle. These data indicate that TaNF-YC11 is potentially involved in regulation of photosynthesis-related genes.

TaNF-YB3 is involved in the regulation of photosynthesis genes in Triticum aestivum

Nuclear Factor Y (NF-Y) transcription factor is a heterotrimer comprised of three subunits: NF-YA, NF-YB and NF-YC. Each of the three subunits in plants is encoded by multiple genes with differential expression profiles, implying the functional specialisation of NF-Y subunit members in plants. In this study, we investigated the roles of NF-YB members in the light-mediated regulation of photosynthesis genes. We identified two NF-YB members from Triticum aestivum (TaNF-YB3 & 7) which were markedly upregulated by light in the leaves and seedling shoots using quantitative RT-PCR. A genome-wide coexpression analysis of multiple Affymetrix Wheat Genome Array datasets revealed that TaNF-YB3-coexpressed transcripts were highly enriched with the Gene Ontology term photosynthesis. Transgenic wheat lines constitutively overexpressing TaNF-YB3 had a significant increase in the leaf chlorophyll content, photosynthesis rate and early growth rate. Quantitative RT-PCR analysis showed that the expression levels of a number of TaNF-YB3-coexpressed transcripts were elevated in the transgenic wheat lines. The mRNA level of TaGluTR encoding glutamyl-tRNA reductase, which catalyses the rate limiting step of the chlorophyll biosynthesis pathway, was significantly increased in the leaves of the transgenic wheat. Significant increases in the expression level in the transgenic plant leaves were also observed for four photosynthetic apparatus genes encoding chlorophyll a/b-binding proteins (Lhca4 and Lhcb4) and photosystem I reaction center subunits (subunit K and subunit N), as well as for a gene coding for chloroplast ATP synthase  subunit. These results indicate that TaNF-YB3 is involved in the positive regulation of a number of photosynthesis genes in wheat.

QTL for root angle and number in a population developed from bread wheats (Triticum aestivum) with contrasting adaptation to water-limited environments

Root architecture traits in wheat are important in deep soil moisture acquisition and may be used to improve adaptation to water-limited environments. The genetic architecture of two root traits, seminal root angle and seminal root number, were investigated using a doubled haploid population derived from SeriM82 and Hartog. Multiple novel quantitative trait loci (QTL) were identified, each one having a modest effect. For seminal root angle, four QTL (-log10(P) >3) were identified on 2A, 3D, 6A and 6B, and two suggestive QTL (-log10(P) >2) on 5D and 6B. For root number, two QTL were identified on 4A and 6A with four suggestive QTL on 1B, 3A, 3B and 4A. QTL for root angle and root number did not co-locate. Transgressive segregation was found for both traits. Known major height and phenology loci appear to have little effect on root angle and number. Presence or absence of the T1BL.1RS translocation did not significantly influence root angle. Broad sense heritability (h 2) was estimated as 50 % for root angle and 31 % for root number. Root angle QTL were found to be segregating between wheat cultivars adapted to the target production region indicating potential to select for root angle in breeding programs. © 2013 Springer-Verlag Berlin Heidelberg.

不同基因型小麦（Triticum aestivum���京411与小偃54抗光氧化特性及其机理的比较研究

对两种不同基因型小麦京411（北京地区高产小麦品种）和小偃54（在生产上已应用二十年的优良品种）幼苗及旗叶光抑制特性进行了比较研究，着重探讨了它们抗光氧化的差异及其机理，主要结果如下： 1. 强光条件下，同京411相比小偃54能保持较高的光合色素含量和放氧速率。其DCPIP光还原活性也较高。 2. 光谱特性分析表明，强光胁迫下小偃54在红区及蓝区的特征性吸收峰及F683荧光发射峰下降的幅度明显小于京411相应峰位的下降。 3. 色素蛋白复合物分析表明，强光条件下，京411色素蛋白复合物中LHCII聚合体大量的解聚，而小偃54在强光条件下仍能保持较高比例的LHCII聚合体。这可能在一定的程度上有利于小偃54在强光下维持较强的激发能耗散的能力。 4. 多肽SDS-PAGE分析表明，强光对不同基因型小麦中同PSII光抑制敏感性有关的两个外周蛋白23kD和17kD的影响不同。光抑制明显地降低了京411的23kD和17kD的含量，而对于小偃54中这两个外周蛋白23kD和17kD的影响不大。强光条件下小偃54旗叶PSII颗粒中捕光色素蛋白27kD含量提高，而京411捕光色素蛋白27kD含量明显的下降。 5. 上述结果表明，西北地区的优良小麦品种小偃54同北京地区的高产品种京411相比更耐强光的胁迫，其抗光氧化的能力较强。 6. 进一步分析表明，同京411相比，小偃54抗光氧化的主要原因是其不仅含有较大的叶黄素循环的色素库，而且在强光下能维持高的VDE酶活性及高水平的叶黄素循环的脱环化水平。 7. 叶黄素循环色素在两个小麦品种类囊体膜色素蛋白复合体中的分布存在差异，抗光氧化的小偃54大部分的VAZ分布在PSII上，其中绝大部分集中在LHCII聚合体上。LHCII上VAZ的集中分布可能有利于在强光下对过多光能的耗散，减少过多激发能对PSII的损伤。 8. 类囊体膜流动性分析表明，叶黄素循环参与了对类囊体膜流动性的调整，对维持强光下抗光氧化品种小偃54的类囊体膜相对稳定起重要作用。 9. 依赖于叶黄素循环的热耗散是抗光氧化品种小偃54的一个主要的光保护途径。

不同年代推出的冬小麦(Triticun aestivum L)品种农艺性状以及光合生理生态特性

本文探讨了五十年来北京地区广泛推广的17个冬小麦(Triticun aestivum L)品种在品种改良的过程中农艺性状和某些光合特性的变化趋势。从中选出形态、产量和推出年代差异最大的3个冬小麦品种：京冬8号、农大139和燕大1817，种植在相同的环境条件下，进一步研究与冬小麦产量提高有关的生理生态特性，以及它们的气体交换特性对于外界环境变化的响应。本试验于1999-2001年在北京农林科学院试验农场（39o09’N, 116o04’E）进行。结果如下： 1. 在冬小麦品种改良的过程中，小麦品种的经济产量、收获指数、千粒重提高，而生物产量、株高、单株穗数、单株籽粒产量和穗长降低。籽粒产量与株高、穗数极显著负相关，与穗粒重、收获指数、千粒重极显著正相关。株高与穗长、单株籽粒产量、穗数显著正相关，而与收获指数和千粒重极显著负相关。收获指数与穗数极显著负相关，而与千粒重极显著正相关。说明株高降低、收获指数提高和千粒重的提高对于冬小麦品种改良过程中产量的提高起重要作用。 2. 随品种推出年代的延迟，各品种苗期-拔节期的净光合速率（PN）、 气孔导度（gs）、蒸腾速率（ E）、量子产率（Fv/Fm）均呈增加的趋势，水分利用率（WUE）呈降低的趋势。在孕穗期-蜡熟期，旗叶的PN也随品种推出年代而呈增大的趋势，而在成熟期呈减小的趋势。gs在孕穗期-灌浆期增大，在蜡熟期和成熟期减小;各个时期的E均呈递增趋势;而WUE呈降低趋势。旗叶的Fv/Fm在孕穗期和开花期呈递增的趋势，而在成熟期下降。在苗期至孕穗期，PN、 E均与产量显著正相关;在拔节始期和孕穗期gs与产量显著正相关（R=0.616, 0.499, P<0.05），在苗期-拔节期、开花期和成熟期，WUE与历史产量和试验产量显著负相关（P<0.05, 或P<0.001），在苗期和拔节期Fv/Fm与产量正相关（P<0.05）。在冬小麦品种的改良过程中，其光合作用的改良不仅表现在净光合速率上，而且还表现在荧光动力学参数Fv/Fm上， 即PSII的原初光能转化效率有所提高。 3. 孕穗期至灌浆期，高产品种京冬8号旗叶的PN、gs、E、叶绿素含量和水分含量均最高，而水分利用率（WUE）较低，且具有较高的光呼吸和较低的暗呼吸，其旗叶的叶比重也较高。京冬8号（上世纪90年代推出）叶片气体交换的日变化表现为：在拔节期，全天的净光合速率均最高，而后随生育进程差异变小，通常上午较高，而在中午和下午较低。其旗叶Fv/Fm的变化趋势与净光合速率相似。燕大1817（上世纪40年代推出）的光合作用的午休现象较不明显，且在下午恢复较快，说明它可能具有一定的抗光抑制能力。孕穗至灌浆期是冬小麦籽粒形成和充实的关键时期，此时，叶片光合产物充足与否直接影响千粒重。进一步研究它们“源库”关系的结果表明，京冬8号“源库”关系协调，能够充分发挥“源“和“库”的潜力，且具有最高的收获指数、穗粒重和千粒重，而其它两个品种燕大1817和农大139都存在提高其品种产量潜力的限制因素。因此我们认为，高产品种的高产不仅因为其叶片具有较高的光合速率和较低的暗呼吸消耗，而且有较大的“库”容量和收获指数。 4. 当CO2浓度从360增加到720 µmol.mol-1时，单位叶面积的净光合速率和叶片的水分利用率 随CO2浓度升高而升高。但不同品种差异很大，京冬8号PN 和WUE最高，增加最多，分别提高了173 %和81 %;其次为农大139（上世纪70年代推出），燕大1817增加最少，分别提高了76 %和65 %。E随CO2 浓度的增加而提高;农大139和燕大1817的gs随CO2浓度的增大而减小，而京冬8号则增大。京冬8号和农大139旗叶胞间CO2浓度（Ci） 随CO2 浓度的增加而增大，而燕大1817 的Ci先增大，而后又急剧降低，且京冬8号的Ci最低，燕大1817 最高。在高CO2浓度下，京冬8号的光合速率显著高于其它两个品种，而Ci却低于其它两个品种，说明京冬8号的光合潜力高于其它两个品种。灌浆期高产品种京冬8号旗叶在田间不同自然光强下，净光合速率都是最高的（差异最大时，比燕大1817提高24.8 %）。因此，冬小麦光合作用的潜力，也在一定程度上得到改良。

Aluminium toxicity in wheat and rye

Com o presente trabalho pretendeu-se determinar e compreender melhor quais os alvos do Alumínio (Al) nas plantas, e contribuir para um melhor entendimento dos mecanismos de tolerância presentes em genótipos com elevado grau de tolerância ao Al. O Al é um dos maiores constituintes do solo e torna-se biodisponível em solos com baixo pH. Nesses casos, a exposição ao Al afecta negativamente o crescimento das plantas conduzindo a uma diminuição da produção. Estes factos são especialmente visíveis nos cereais, sendo a exposição ao Al uma das principais causas das quebras de produção nestas espécies. O Capítulo I consiste numa revisão geral sobre a toxicidade do Al nas plantas, apontando os seus principais alvos. Apresenta também os mecanismos de resistência, que inclui Al-destoxificação externa e interna, em diferentes espécies. O Capítulo II aborda os estudos sobre a exposição de curto prazo ao Al em duas espécies de cereais: Triticum aestivum L. e Secale cereale L., tendo-se sempre utilizado um genótipo Al-tolerante e um Al-sensível para cada espécie. Este capítulo está dividido em três estudos: no Capítulo II.1 real��a-se o efeito da exposição a 185 μM de Al no equil��brio nutricional em trigo. Verificou-se que em ambos os genótipos (sensível e tolerante) o perfil de macro e micro nutrientes se alterou, tendo uma interferência negativa, sobretudo no nível de P, Mg e K. Al��m disso, registaram-se diferenças na diferenciação da endoderme consoante o grau de tolerância/sensibilidade do genótipo. No Capítulo II.2 apresenta-se uma visão mais abrangente dos efeitos da exposição a 185 μM de Al em trigo, incluindo parâmetros fisiol��gicos, estruturais, citol��gicos e genotóxicos. Demonstra-se, pela primeira vez, que a progressão do ciclo celular é diferentemente regulada, dependendo da tolerância/sensibilidade do genótipo e que, mesmo em zonas já diferenciadas da raiz a exposição ao Al leva à deposição de calose. O Capítulo II.3 aborda os efeitos da exposição de 1.1 mM de Al em centeio, numa perspectiva bastante alargada. Apresenta-se o desequil��brio nutricional, sobretudo no genótipo sensível, assim como a translocação de Al para a parte aérea nesse mesmo genótipo. Analisa-se também o comportamento de ambos os genótipos no que se refere ao ciclo celular, diferenciação da endoderme, crescimento radicular, reservas de hidratos de carbono, entre outros. Os resultados apontam para estratégias bem definidas adoptadas pelo genótipo tolerante de forma a minimizar a acção do Al no sistema radicular. O Capítulo III compreende a exposição longa ao Al. Dois genótipos de centeio com diferentes graus de tolerância ao Al foram expostos a 1.11 mM e 1.85 mM de Al durante 21 dias, tendo sido usados dois pontos de amostragem (15 e 21 dias). Este capítulo está dividido em dois estudos: No Capítulo III. 1 analisamse os mecanismos antioxidantes (folhas e raízes) como resposta à exposição ao Al, dando-se especial atenção ao ciclo do ascorbato-glutationas. A exposição ao Al levou a stress oxidativo e a alterações na actividade de enzimas antioxidantes e no conteúdo de antioxidantes não-enzimáticos. Demonstra-se que os dois órgãos apresentam respostas diferentes à exposição ao Al e que a capacidade de sobreviver em ambientes ricos em Al depende da eficácia da resposta antioxidante. Para al��m disso, a resposta do ciclo ascorbato-glutationas parece estar dependente do tipo de órgão, grau de tolerância e do tempo de exposição ao Al. No Capítulo III. 2 analisam-se os efeitos da exposição ao Al na fotossíntese. Verificou-se que o Al afecta negativamente a taxa fotossintética em ambos os genótipos, embora as alterações que o Al provoca nas trocas gasosas e no Ciclo de Calvin sejam dependentes do genótipo. Verificou-se também que os danos no genótipo sensível surgem mais cedo do que no genótipo tolerante, mas que ambos apresentam susceptibilidade ao Al após exposição de longo termo. Por fim, no Capítulo IV são apresentadas as conclusões da Tese de Doutoramento.

Discrimination between organically and conventionally grown winter wheat by means of holistic and selected analytical methods

Die Verordnung des Europäischen Rates (EC) 834/2007 erkennt das Recht des Konsumenten auf eine Entscheidung basierend auf vollständiger Information bezüglich der enthaltenen Zutaten im Produkt und deren Herkunft (Qualität der Verarbeitung). Die primäre Kennzeichnungsverordnung betont „organische“ Produktionsstandards ebenso wie die Notwendigkeit zur Kontrolle und Aufsicht. Jedoch ist zurzeit keine validierte Methode zur analytischen Diskriminierung zwischen „organischer“ und „konventioneller“ Herkunft von angebotenen Lebensmitteln verfügbar. Das Ziel der Dissertationsarbeit war die Überprüfung der Möglichkeit mit ausgewählten analytischen und holistischen Methoden zwischen organisch und konventionell angebautem Weizen objektiv zu unterscheiden. Dies beinhaltete die Bestimmung des Gesamtstickstoff (Protein) nach Dumas, zweidimensionale Fluoreszenzdifferenz Gelelektrophorese (2D DIGE) und die Kupferchloridkristallisation. Zusätzlich wurde die Anzahl der Körner pro Ähre (Kornzahl) bestimmt. Alle Bestimmungen wurden an rückverfolgbaren in den Jahren 2005 – 2007 in Belgien gesammelten Proben des Winterweizen (Triticum aestivum L. cv. Cubus) durchgeführt. Statistisch signifikante (p < 0.05) Unterschiede wurden innerhalb der untersuchten Probengruppen sowohl in der Kornzahl, dem Gesamtsticksoff (Eiweißgehalt), als auch in der Gesamtausbeute gefunden, wobei in den meisten Fällen die konventionellen Proben höhere Kornzahlen und Gesamtsticksoff (Eiweißgehalte) aufwiesen. Eine mit der 2D DIGE kompatible Probenvorbereitungsmethode für Winterweizen wurde entwickelt und auf einen internen Winterweizenstandard sowie die entsprechenden Proben angewendet. Die organischen Proben waren im Vergleich mit den konventionellen Gegenstücken in allen Fällen durch eine kleinere Anzahl von signifikant (p < 0.05) stärker exprimierten Proteinspots gekennzeichnet. Gewisse Tendenzen in Richtung der Bevorzugung bestimmter Regionen von stärker ausgeprägten Proteinspots auf aufeinanderfolgenden 2D Abbildungen in Abhängigkeit von der landwirtschaftlichen Methode konnten zwar beobachtet werden, jedoch konnte kein universelles Markerprotein zur Unterscheidung von konventionell und biologisch angebautem Winterweizen identifiziert werden. Die rechnergestützte Verarbeitung der digitalisierten Kristallisierungsbilder mittels multivariater statistischer Analyse und der Regression partieller kleinster Quadrate ermöglichte eine 100%ig korrekte Vorhersage der landwirtschaftlichen Methode unbekannter Proben sowie der Beschreibung der Kristallisierungsbilder. Diese Vorhersage bezieht sich nur auf den hier verwendeten Datensatz (Proben einer Sorte von drei Standorten über zwei Jahre) und kann nicht ohne weiteres übertragen (generalisiert) werden. Die Ergebnisse deuten an, dass die Quantifizierung der beschriebenen Parameter ein hohes Potential zur L��sung der gestellten Aufgabe besitzt.

Down-regulation of the CSLF6 gene results in decreased (1,3;1,4)-beta-D-glucan in endosperm of wheat

(1,3;1,4)-beta-d-Glucan (beta-glucan) accounts for 20% of the total cell walls in the starchy endosperm of wheat (Triticum aestivum) and is an important source of dietary fiber for human nutrition with potential health benefits. Bioinformatic and array analyses of gene expression profiles in developing caryopses identified the CELLULOSE SYNTHASE-LIKE F6 (CSLF6) gene as encoding a putative beta-glucan synthase. RNA interference constructs were therefore designed to down-regulate CSLF6 gene expression and expressed in transgenic wheat under the control of a starchy endosperm-specific HMW subunit gene promoter. Analysis of wholemeal flours using an enzyme-based kit and by high-performance anion-exchange chromatography after digestion with lichenase showed decreases in total beta-glucan of between 30% and 52% and between 36% and 53%, respectively, in five transgenic lines compared to three control lines. The content of water-extractable beta-glucan was also reduced by about 50% in the transgenic lines, and the M(r) distribution of the fraction was decreased from an average of 79 to 85 x 10(4) g/mol in the controls and 36 to 57 x 10(4) g/mol in the transgenics. Immunolocalization of beta-glucan in semithin sections of mature and developing grains confirmed that the impact of the transgene was confined to the starchy endosperm with little or no effect on the aleurone or outer layers of the grain. The results confirm that the CSLF6 gene of wheat encodes a beta-glucan synthase and indicate that transgenic manipulation can be used to enhance the health benefits of wheat products.

Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription

BACKGROUND: Serial Analysis of Gene Expression (SAGE) is a powerful tool for genome-wide transcription studies. Unlike microarrays, it has the ability to detect novel forms of RNA such as alternatively spliced and antisense transcripts, without the need for prior knowledge of their existence. One limitation of using SAGE on an organism with a complex genome and lacking detailed sequence information, such as the hexaploid bread wheat Triticum aestivum, is accurate annotation of the tags generated. Without accurate annotation it is impossible to fully understand the dynamic processes involved in such complex polyploid organisms. Hence we have developed and utilised novel procedures to characterise, in detail, SAGE tags generated from the whole grain transcriptome of hexaploid wheat. RESULTS: Examination of 71,930 Long SAGE tags generated from six libraries derived from two wheat genotypes grown under two different conditions suggested that SAGE is a reliable and reproducible technique for use in studying the hexaploid wheat transcriptome. However, our results also showed that in poorly annotated and/or poorly sequenced genomes, such as hexaploid wheat, considerably more information can be extracted from SAGE data by carrying out a systematic analysis of both perfect and "fuzzy" (partially matched) tags. This detailed analysis of the SAGE data shows first that while there is evidence of alternative polyadenylation this appears to occur exclusively within the 3' untranslated regions. Secondly, we found no strong evidence for widespread alternative splicing in the developing wheat grain transcriptome. However, analysis of our SAGE data shows that antisense transcripts are probably widespread within the transcriptome and appear to be derived from numerous locations within the genome. Examination of antisense transcripts showing sequence similarity to the Puroindoline a and Puroindoline b genes suggests that such antisense transcripts might have a role in the regulation of gene expression. CONCLUSION: Our results indicate that the detailed analysis of transcriptome data, such as SAGE tags, is essential to understand fully the factors that regulate gene expression and that such analysis of the wheat grain transcriptome reveals that antisense transcripts maybe widespread and hence probably play a significant role in the regulation of gene expression during grain development.

Transcriptome analysis of grain development in hexaploid wheat

Background: Hexaploid wheat is one of the most important cereal crops for human nutrition. Molecular understanding of the biology of the developing grain will assist the improvement of yield and quality traits for different environments. High quality transcriptomics is a powerful method to increase this understanding. Results: The transcriptome of developing caryopses from hexaploid wheat ( Triticum aestivum, cv. Hereward) was determined using Affymetrix wheat GeneChip (R) oligonucleotide arrays which have probes for 55,052 transcripts. Of these, 14,550 showed significant differential regulation in the period between 6 and 42 days after anthesis ( daa). Large changes in transcript abundance were observed which were categorised into distinct phases of differentiation ( 6 - 10 daa), grain fill ( 12 - 21 daa) and desiccation/maturation ( 28 - 42 daa) and were associated with specific tissues and processes. A similar experiment on developing caryopses grown with dry and/or hot environmental treatments was also analysed, using the profiles established in the first experiment to show that most environmental treatment effects on transcription were due to acceleration of development, but that a few transcripts were specifically affected. Transcript abundance profiles in both experiments for nine selected known and putative wheat transcription factors were independently confirmed by real time RT-PCR. These expression profiles confirm or extend our knowledge of the roles of the known transcription factors and suggest roles for the unknown ones. Conclusion: This transcriptome data will provide a valuable resource for molecular studies on wheat grain. It has been demonstrated how it can be used to distinguish general developmental shifts from specific effects of treatments on gene expression and to diagnose the probable tissue specificity and role of transcription factors.

Assessment of wheat cultivars for drought tolerance via osmotic stress imposed at early seedling growth stages

A study was conducted in the Department of Plant Breeding and Genetics,Sindh Agriculture University, Tandojam, Pakistan during the year 2009. Sixteen spring wheat cultivars (Triticum aestivum L.) were screened under osmotic stress with three treatments i.e. control-no PEG (polyethylene glycol), 15 percent and 25 percent PEG-6000 solution. The analysis of variance indicated significant differences among treatments for all seedling traits except seed germination percentage. Varieties also differed significantly in germination percentage, coleoptile length, shoot root length, shoot weight, root/shoot ratio and seed vigour index. However, shoot and root weights were non-significant. Significant interactions revealed that cultivars responded variably to osmotic stress treatments; hence provided better opportunity to select drought tolerant cultivars at seedling growth stages. The relative decrease over averages due to osmotic stress was 0.8 percent in seed germination, 53 percent in coleoptile length 62.9 percent in shoot length, 74.4 percent in root length, 50.6 percent in shoot weight, 45.1 percent in root weight, 30.2 percent in root/shoot ratio and 68.5 percent in seed vigour index. However, relative decrease of individual variety for various seedling traits could be more meaningful which indicated that cultivar TD-1 showed no reduction in coleoptile length, while minimum decline was noted in Anmol. For shoot length, cultivar Sarsabz expressed minimum reduction followed by Anmol. However, cultivars Anmol, Moomal, Inqalab-91, and Pavan gave almost equally lower reductions for root length suggesting their higher stress tolerance. In other words, cultivars Anmol, Moomal, Inqalab-91, Sarsabz, TD-1, ZA-77 and Pavan had relatively longer coleoptiles, shoots and roots, and were regarded as drought tolerant. Correlation coefficients among seedlings traits were significant and positive for all traits except germination percentage which had no significant correlation with any of other trait. The results indicated that increase in one trait may cause simultaneous increase in other traits; hence selection for any of these seedling attributes will lead to develop drought tolerant wheat cultivars.

RNA interference suppression of genes in glycosyl transferase families 43 and 47 in wheat starchy endosperm causes large decreases in arabinoxylan content

The cell walls of wheat (Triticum aestivum) starchy endosperm are dominated by arabinoxylan (AX), accounting for 65% to 70% of the polysaccharide content. Genes within two glycosyl transferase (GT) families, GT43 (IRREGULAR XYLEM9 [IRX9] and IRX14) and GT47 (IRX10), have previously been shown to be involved in the synthesis of the xylan backbone in Arabidopsis, and close homologs of these have been implicated in the synthesis of xylan in other species. Here, homologs of IRX10 TaGT47_2 and IRX9 TaGT43_2, which are highly expressed in wheat starchy endosperm cells, were suppressed by RNA interference (RNAi) constructs driven by a starchy endosperm-specific promoter. The total amount of AX was decreased by 40% to 50% and the degree of arabinosylation was increased by 25% to 30% in transgenic lines carrying either of the transgenes. The cell walls of starchy endosperm in sections of grain from TaGT43_2 and TaGT47_2 RNAi transgenics showed decreased immunolabeling for xylan and arabinoxylan epitopes and approximately 50% decreased cell wall thickness compared with controls. The proportion of AX that was water soluble was not significantly affected, but average AX polymer chain length was decreased in both TaGT43_2 and TaGT47_2 RNAi transgenics. However, the long AX chains seen in controls were absent in TaGT43_2 RNAi transgenics but still present in TaGT47_2 RNAi transgenics. The results support an emerging picture of IRX9-like and IRX10-like proteins acting as key components in the xylan synthesis machinery in both dicots and grasses. Since AX is the main component of dietary fiber in wheat foods, the TaGT43_2 and TaGT47_2 genes are of major importance to human nutrition.

Influence of irrigation on wheat crop

O uso da irrigação na triticultura tem aumentado significativamente nos últimos anos no Brasil. Neste trabalho, objetivou-se avaliar a influência da irrigação na produtividade, na qualidade tecnol��gica da farinha e no sistema radicular do trigo. em experimento de campo no IAPAR, em Londrina, Paraná, a cultivar IPR 118 foi cultivada sob irrigação por aspersão convencional (Tratamento Irrigado) e sem irrigação (Tratamento Sequeiro). A produtividade foi determinada, colhendo-se três amostras de 25 m² por tratamento. Nestas mesmas amostras, procedeu-se à análise da qualidade tecnol��gica da farinha, sendo avaliada, entre outros parâmetros, a força de gl��ten (W). A avaliação do sistema radicular foi realizada após a colheita, no perfil de 0 a 45 cm de profundidade do solo, amostrando-se oito plantas em cada tratamento. O método da parede do perfil foi utilizado para determinar o número de raízes (NR) e o método do monólito para determinar a massa seca de raízes (MSR). A irrigação aumentou em três vezes a produtividade do trigo, porém diminuiu o W na farinha. Ainda assim, o valor de W encontrado no Tratamento Irrigado (249 10-4 J) foi suficiente para manter a classificação do trigo como tipo-pão, a mesma para o qual a cultivar IPR 118 é classificada. Os valores medidos de NR e a MSR foram iguais ou maiores no Tratamento Sequeiro.

Silicon leaf application and physiological quality of white oat and wheat seeds

Plant nutrition can positively influence quality of seeds by improving plant tolerance to adverse climate. In this context, silicon is currently considered a micronutrient and it is beneficial to plant growth, especially Poaceaes such as white oat and wheat, thereby improving physiological quality of seeds. This study had the objective of evaluating the effects of silicon leaf application on plant tillering, silicon levels and physiological quality of white oat and wheat seeds besides establishing correlations between them. Two experiments were carried out in winter with white oat and wheat. The experimental design was the completely randomized block with eight replications. Treatments consisted of foliar application of silicon (0.8% of soluble silicon, as stabilized orthosilicic acid) and a control (with no application). Silicon levels in leaves were determined at flowering whereas the number of plants and panicles/spikes per area was counted right before harvest. Seed quality was evaluated right after harvest through mass, germination and vigor tests. Data was submitted to variance analysis and means were compared by the Tukey test at a probability level of 5%. Person's linear correlation test was performed among silicon level in plants, tillering and seed quality data. Silicon leaf application increases root and total length of white oat seedlings as an effect of higher Si level in leaves. Silicon leaf application increases mass of wheat seeds without affecting germination or vigor.