Cellular impermeability and uptake of biocides and antibiotics in Gram-positive bacteria and mycobacteria

Gram-positive bacteria possess a permeable cell wall that usually does not restrict the penetration of antimicrobials. However, resistance due to restricted penetration can occur, as illustrated by vancomycin-intermediate resistant Staphylococcus aureus strains (VISA) which produce a markedly thickened cell wall. Alterations in these strains include increased amounts of nonamidated glutamine residues in the peptidoglycan and it is suggested that the resistance mechanism involves 'affinity trapping' of vancomycin in the thickened cell wall. VISA strains have reduced doubling times, lower sensitivity to lysostaphin and reduced autolytic activity, which may reflect changes in the D-alanyl ester content of the wall and membrane teichoic acids. Mycobacterial cell walls have a high lipid content, which is assumed to act as a major barrier to the penetration of antimicrobial agents. Relatively hydrophobic antibiotics such as rifampicin and fluoroquinolones may be able to cross the cell wall by diffusion through the hydrophobic bilayer composed of long chain length mycolic acids and glycolipids. Hydrophilic antibiotics and nutrients cannot diffuse across this layer and are thought to use porin channels which have been reported in many species of mycobacteria. The occurrence of porins in a lipid bilayer supports the view that the mycobacterial wall has an outer membrane analogous to that of gram-negative bacteria. However, mycobacterial porins are much less abundant than in the gram-negative outer membrane and allow only low rates of uptake for small hydrophilic nutrients and antibiotics.

Modes of action of antibacterial agents

This chapter describes the modes of action of the major antibiotics and synthetic agents used to treat bacterial infections. Particular attention is given to the biochemical mechanisms by which the agents interfere with biosynthetic processes and the basis for their selective antibacterial action. Interference with the biosynthesis and assembly of structural components of the bacterial cell wall provides the basis for many important groups of antibiotics, including the agents targeting steps in peptidoglycan synthesis. Other agents exploit more subtle differences between bacteria and mammalian cells in fundamental processes such as DNA, RNA and protein synthesis.

An assessment of the microbial contribution to aquatic dissolved organic nitrogen using amino acid enantiomeric ratios

There is increasing evidence that certain microbially-derived compounds may account for part of the aquatic dissolved organic nitrogen (DON) pool. Enantiomeric ratios of amino acids were used to assess the microbial input to the DON pool in the Florida Everglades, USA. Elevated levels of d-alanine, d-aspartic acid, d-glutamic acid and d-serine indicated the presence of peptidoglycan in the samples. The estimated peptidoglycan contribution to amino acid nitrogen ranged from 2.8 ± 0.1% to 6.4 ± 0.9%, increasing with salinity from freshwater to coastal waters. The distribution of individual d-amino acids in the samples suggests additional inputs to DON, possibly from archaea or from abiotic racemization of l-amino acids.

Quitooligosacáridos bifuncionales: relación entre características químico-físicas y propiedades biológicas

As the degraded products of chitosan, chitooligosaccharides (COS) have recently been produced by several methods, such as enzymatic an acidic hydrolysis. Chitosans are a family of biocompatible and biodegradable biopolymers obtained by N-deacetylation of chitin, the most abundant natural polymer after cellulose, consisting of two monomeric units, N-acetyl-2- amino-2-deoxi-D-glucose (A units) and 2-amino-2-deoxi-D-glucose (D units) linked by β (1→4) links. The degraded products COS, have a smaller molecular weight and therefore have better solubility and lower viscosity under physiological conditions because of shorter chain lengths and free amino groups in D-glucosamine units. The study of COS has been increasing not only because they come from a natural source, but also because of their biological compatibility and effectiveness. There are numerous reports on the biological activities of COS and their potential applications in food industry, pharmacy, agricultural or biomedicine. Nevertheless, in these studies it is difficult to find well defined COS in terms of physicochemical parametres, because these samples are usually poorly characterized. This makes it difficult to compare the results and to understand their mecanism of action. Degradation of the O-glycosidic linkages of chitosan by different methods, results in COS with different numbers and sequences of A and D units as well as different degrees of polymerisation (DP). Over the past few years, several technological approaches have been taken in preparing COS, including acid hydrolysis or enzymatic methods, among others. Therefore, in order to obtain COS with different physicochemical properties, different preparation methods of COS have been developed in this work. Then, the study of the relationship between physicochemical properties of these COS and their biological activities such as natural antioxidants, antibacterial agents, mucoadhesive and anti-inflammatory effects have been studied...

Post-translational lysine-acetylation of Ran and its regulation by Sirtuin deacetylases

Through recent advances in high-throughput mass spectrometry it has become evident that post-translational N-(epsilon)-lysine-acetylation is a modification found on thousands of proteins of all cellular compartments and all essential physiological processes. Many aspects in the biology of lysine-acetylation are poorly understood, including its regulation by lysine-acetyltransferases and lysine-deacetylases (KDACs). Here, the role of this modification was investigated for the small GTP-binding protein Ran, which, inter alia, is essential for the regulation of nucleocytoplasmic transport. To this end, site-specifically acetylated Ran was produced in E. coli by genetic code expansion. For five previously identified sites, Ran acetylation was tested regarding its impact on the intrinsic GTP hydrolysis rate, the assembly of export complexes (modeled in vitro with the export receptor CRM1 and the export substrate Spn1) and the interaction of Ran with its GTPase activation protein RanGAP and RanBP1. Overall, mild effects of Ran acetylation were observed for intrinsic and RanGAP-stimulated GTP hydrolysis rates. The interaction of active Ran with RanBP1 was negatively influenced by Ran acetylation at K159. Moreover, CRM1 bound to Ran acetylated at K37, K99 or K159 interacted more strongly with Spn1. Thus, lysine-acetylation interferes with essential aspects of Ran function. An in vitro screen was performed to identify potential Ran KDACs. The NAD+-dependent KDACs of the Sirtuin class showed activity towards two acetylation sites of Ran, K37 and K71. The specificity of Sirtuins was further analyzed based on an additional Ran acetylation site, K38. Since deacetylation of RanAcK38 was much slower compared to RanAcK37, di-acetylated RanAcK37/38 was tested next. The deacetylation rate of di-acetylated Ran was comparable to that of RanAcK37. Deacetylation experiments under single turnover conditions revealed that deacetylation occurs first at the K38 site in the di-acetylated RanAcK37/38 background. The ability of Sirtuins to deacetylate two adjacent AcKs was further investigated based on two proteins, which had previously been found to be di-acetylated and targeted by Sirtuins, namely the tumor suppressor protein p53 and phosphoenolpyruvate carboxykinase 1 (PEPCK1). p53 was readily deacetylated at two di-acetylation sites (K372/372 and K381/382), whereas PEPCK1 was not deacetylated in vitro. Taken together, these results have important implications for the substrate specificity of Sirtuins.

Channel-forming activity of syringopeptin 25 A in mercury-supported phospholipid monolayers and negatively charged bilayers

Interactions of the cationic lipodepsipeptide syringopeptin 25 A (SP25A) with mercury-supported dioleoylphosphatidylcholine (DOPC), dioleoylphosphatidylserine (DOPS) and dioeleoylphosphatidic acid (DOPA) self-assembled monolayers (SAMs) were investigated by AC voltammetry in 0.1 M KCl at pH 3, 5.4 and 6.8. SP25A targets and penetrates the DOPS SAM much more effectively than the other SAMs not only at pH 6.8, where the DOPS SAM is negatively charged, but also at pH 3, where it is positively charged just as SP25A. Similar investigations at tethered bilayer lipid membranes (tBLMs) consisting of a thiolipid called DPTL anchored to mercury, with a DOPS, DOPA or DOPC distal monolayer on top of it, showed that, at physiological transmembrane potentials, SP25A forms ion channels spanning the tBLM only if DOPS is the distal monolayer. The distinguishing chemical feature of the DOPS SAM is the ionic interaction between the protonated amino group of a DOPS molecule and the carboxylate group of an adjacent phospholipid molecule. Under the reasonable assumption that SP25A preferentially interacts with this ion pair, the selective lipodepsipeptide antimicrobial activity against Gram-positive bacteria may be tentatively explained by its affinity for similar protonated amino-carboxylate pairs, which are expected to be present in the peptide moieties of peptidoglycan strands.

Quitosana na indução de resistência ao tombamento de plântulas de espécies olerícolas e no controle de fitopatógenos in vitro

Induction of resistance is defined as the activation of a state of resistance against diseases which is induced systemically in plants by the use of biotic or abiotic agents without any modification of the plant genome, occurring non-specific way, by activating genes coding for various plant defense responses. Chitosan is a polymer derived from the deacetylation of chitin, which is found in large quantities in crustacean shell, and studied with the potential to control plant pathogens, both by its direct fungistatic action, as the ability to induce protection of plants, indicating the presence of molecules of elicitoras characteristics. Three experiments with objective of evaluating the potential of chitosan in the seedling resistance induction were developed, beet (Beta vulgaris) seeds, cucumber (Cucumis sativus) seeds and tomato (Solanum lycopersicum) seeds, and the control of Fusarium sp., Rhizoctonia solani K¨uhn e Pythium sp. in vitro conditions. The experimental design was completely randomized, with four replications. Beet seeds, tomato and cucumber were submerged in chitosan solution for 20 minutes, in concentrations of 0.25, 0.5, 1 and 2% in the control and distilled water. Seeds were sown in trays containing Plantmax Florestalr substrate sterilized and inoculated with Fusarium sp., Rhizoctonia solani K¨unh and Pythium sp., respectively for the three cultures. The experiment was conducted for 14 days in growth chamber with controlled temperature (25 C 2 C), light (12 hour photoperiod) and humidity (70% 10%). The evaluations were seed emergency, seedling damping-off, seedling length, fresh weight and activity of the enzymes phenylalanine amˆonia-liase (PAL), chitinase and b-1,3-glucanase. It was also rated the mycelial growth of Fusarium sp., Pythium sp. and R. solani on P.D.A. (Potato-Dextrose and Agar) culture medium containing chitosan at the same concentrations evaluated in seeds. For beet growing, seed treatment with chitosan presented higher emergence and the length of the seedlings, and reduced the percentage of tipping. Treatment with chitosan activated the systemic acquired resistance with expression of chitinase and b-1,3-glucanase enzymes. For the tomato crop in chitosan concentration of 0.25% favored the emergency of seedlings, reduced the incidence of tipping and activated the PAL enzymes, chitinase and b-1,3-glucanase. In cucumber on the concentration of up 0.5% favored seedlings emergence and reduces the incidence of tipping. Chitosan activated the PAL enzymes and b-1,3-glucanase. Chitosan also presented fungistatic action on the initial growth of Pythium sp. and R. solani in vitro conditions, however, such action did not prevail until the end of the experiment. To Fusarium sp. the concentration of chitosan resulted in the reduction of mycelial growth in vitro.

Produção de quitosana a partir de resíduos de camarão: análise do processo e da operação de secagem

A quitina é encontrada principalmente nos exoesqueletos de crustáceos, insetos e na parede celular de fungos. O biopolímero quitosana é obtido através da hidrólise alcalina da quitina. A despolimerização da quitosana é realizada para se obter um produto com valores baixos de massa molecular. O uso da quitosana em diversas áreas é diretamente relacionada com a massa molecular e o grau de desacetilação do polímero. Os objetivos deste trabalho foram o estudo da cinética de secagem de quitina em camada delgada utilizando um modelo difusivo, considerando a resistência externa à transferência de massa; a determinação do comportamento da massa molecular média viscosimétrica da quitosana, durante a secagem convectiva, em camada delgada; a otimização das etapas de desacetilação e despolimerização da quitosana. A quitina foi obtida de resíduos de camarão. Os experimentos da secagem de quitina e da quitosana foram em secador de bandejas, a 60°C, sendo que para a quitina foram utilizadas duas velocidades do ar de 0,5 e 1,5 m/s. A estimativa da viscosidade intrínseca foi através da equação de Huggins e a massa molecular da quitosana foi calculada pela equação de Mark-Houwink-Sakurada. As otimizações da reação de desacetilação e despolimerização foram realizadas utilizando a metodologia da superfície de resposta. Para a reação de desacetilação foram variados o tempo e a temperatura. Para a reação de despolimerização foram analisados a concentração de ácido clorídrico, a temperatura e o tempo de reação. O modelo difusivo com difusividade efetiva variável, utilizado para analisar a secagem de quitina, apresentou concordância com os dados experimentais, onde foi observado o efeito da resistência externa à transferência de massa, quando utilizada a menor velocidade do ar. A condição ótima da reação de desacetilação para massa molecular foi observada na temperatura de 130°C em 90 min, e correspondeu a massa molecular de 150 kDa e um grau de desacetilação de 90%. A operação de secagem da quitosana causou um aumento na massa molecular média viscosimétrica de 27% e este aumento foi linear com o tempo e a umidade do polímero, apresentando duas regiões. As condições da reação de despolimerização para alcançar 50 kDa foram à temperatura de reação de 65°C, concentração de ácido clorídrico de 35% v/v. Nestas condições a cinética de despolimerização foi de pseudo-primeira ordem, apresentando duas fases.

Remoção de corantes alimentícios em sistema aquoso binário utilizando quitosana modificada com cianoguanidina como adsorvente

Os estudos de adsorção de corantes alimentícios de soluções aquosas geralmente estão voltados para a remoção de um corante específico, porém, as misturas binárias são mais realistas para simular efluentes industriais. A adsorção de corantes com quitosana é considerada uma tecnologia alternativa eco amigável, e quando a estrutura da quitosana é modificada quimicamente, resulta em um adsorvente mais adequado. A reticulação da quitosana com cianoguanidina apresenta vantagens, como melhoria na estabilidade em soluções ácidas e diminuição do custo do adsorvente. Nesta pesquisa, o objetivo do trabalho foi modificar a quitosana com cianoguanidina para remoção de corantes alimentícios em sistema aquoso binário. A fim de verificar o comportamento dos adsorventes na operação de adsorção, foram preparadas amostras de quitosana com diferentes graus de desacetilação (75%, 85% e 95%), e após, foram realizadas modificações destas amostras com cianoguanidina. Os adsorventes foram caracterizados e aplicados para a adsorção de azul indigotina e amarelo tatrazina em sistema aquoso binário e em sistema simples. O efeito do pH e do grau de desacetilação foram verificados para a remoção dos corantes por quitosana com e sem modificação em sistema simples e binário. Curvas de equilíbrio foram obtidas em diferentes temperaturas e o modelo estendido de Langmuir foi ajustado aos dados experimentais. O comportamento cinético foi avaliado através dos modelos pseudo-primeira ordem, pseudo-segunda ordem e Avrami. Os parâmetros termodinâmicos foram determinados e estudos de dessorção do adsorvente foram realizados. O pH mais adequado foi 3, e o melhor grau de desacetilação foi 95% para ambos os sistemas aquosos e adsorbatos. As capacidades de adsorção da quitosana sem e com modificação não apresentaram diferença significativa. O modelo de Langmuir estendido apresentou ajuste adequado às curvas de equilíbrio e as máximas capacidades de adsorção foram 595,3 e 680,0 mg g-1, obtidas à 25ºC, para o os corantes azul indigotina e amarelo tatrazina, respectivamente. O modelo de Avrami foi o que melhor se ajustou aos dados cinéticos de adsorção. A dessorção do adsorvente foi possível por dois ciclos, mantendo sua capacidade de adsorção em 209,7 mg g-1 no primeiro ciclo e 200,2 mg g-1 no segundo ciclo. A quitosana modificada com cianoguanidina apresentou-se como um adsorvente promissor para a remoção de corantes alimentícios em sistema binário.

Quitosana imobilizada em suporte inerte para a adsorção de corantes alimentícios em coluna de leito fixo

O uso de corantes sintéticos na indústria de alimentos tem provocado transtornos à saúde humana e ao meio ambiente. A quitosana pode ser imobilizada em matrizes sólidas e aplicada na remoção de corantes em coluna de leito fixo. A análise da dinâmica de uma coluna de leito fixo é baseada na curva de ruptura, esta é dependente da geometria da coluna, das condições operacionais e dos dados de equilíbrio. Neste contexto, o objetivo deste trabalho foi estudar o recobrimento de esferas de vidro por quitosana e sua aplicação como adsorvente de corantes em coluna de leito fixo. No estudo do recobrimento avaliaram-se os efeitos da concentração de quitosana e dos métodos de cura. As esferas recobertas foram aplicadas em ensaios de adsorção estático e dinâmico. Inicialmente, avaliou-se o equilíbrio de adsorção através da construção de isotermas e ajuste de modelos, e após, avaliaram-se os efeitos do tipo de cura e do grau de desacetilação da quitosana. Em seguida, foram analisados os efeitos do tipo de corante e do pH, e o comportamento cinético da adsorção pela construção de curvas de ruptura e ajuste de modelos dinâmicos. A influência da altura do leito e da concentração inicial de corante sobre os parâmetros da adsorção em leito fixo foram analisados através da metodologia de superfície de resposta (MSR). Ao final, estudou-se a regeneração da coluna. Os resultados mostraram que os maiores percentuais de recobrimento foram obtidos pelos métodos físico e físico/químico, na concentração de quitosana de 0,5% (m/v). Nestas condições o percentual de recobrimento foi de 46%. Nas imagens da superfície das esferas (MEV) observou-se que as mesmas foram recobertas de forma homogênea pela quitosana. As isotermas de equilíbrio obtidas foram classificadas como do tipo V, sendo o modelo de Sips o mais adequado para representar os dados experimentais. As capacidades máximas de adsorção foram 337 mg g-1, 286 mg g-1 e 200 mg g-1 para os corantes amarelo tartrazina, amarelo crepúsculo e vermelho 40, respectivamente. A aplicação das esferas recobertas com quitosana em leito fixo mostrou-se mais adequada utilizando o método de cura físico/químico e quitosana com grau de desacetilação de 85%. A máxima capacidade de adsorção da coluna em função do corante e do pH variou de 13 a 108 mg g–1. Os modelos BDST (bed–depth–service–time), Thomas e Yoon–Nelson foram adequados para representar os dados experimentais. De acordo com a MSR, o melhor desempenho do leito foi com altura de 30 cm e concentração inicial de corante de 50 mg L-1. Nestas condições, obteve-se tempo de ruptura de 88 min, máxima capacidade da coluna de 108 mg g-1 e remoção de 86 %. Na regeneração da coluna observou-se que cerca de 75% da capacidade máxima da coluna foi mantida após cinco ciclos de adsorção–eluição. Diante do exposto, a coluna de leito fixo empacotada com esferas recobertas com quitosana mostrou-se promissora na remoção de corantes de soluções aquosas.

The cellular and mechanistic study of nisin inhibition of bacillus anthracis spore outgrowth, nisin alteration of infection, and native producer immunity

A critical step during Bacillus anthracis infection is the outgrowth of germinated spores into vegetative bacilli that proliferate and disseminate rapidly within the host. An important challenge exists for developing chemotherapeutic agents that act upon and kill B. anthracis immediately after germination initiation when antibiotic resistance is lost, but prior to the outgrowth into vegetative bacilli, which is accompanied by toxin production. Chemical agents must also function in a manner refractive to the development of antimicrobial resistance. In this thesis we have identified the lantibiotics as a class of chemotherapeutics that are predicted to satisfy these two criteria. The objective of this thesis was to evaluate the efficacy of nisin, a prototypical lantibiotic, in prevention of outgrowth of germinated B. anthracis spores. Like all lantibiotics, nisin is a ribosomally translated peptide that undergoes post-translational modification to form (methyl)lanthionine rings that are critical for antimicrobial activity. Our studies indicate that nisin rapidly inhibits the in vitro outgrowth of germinated B. anthracis Sterne 7702 spores. Although germination initiation was shown to be essential for nisin-dependent antimicrobial activity, nisin did not inhibit or promote germination initiation. Nisin irreversibly killed germinated spores by blocking the establishment of a membrane potential and oxidative metabolism, while not affecting the dissolution of the outer spore structures. The membrane permeability of the spore was increased by nisin, but germinated spores did not undergo full lysis. Nisin was demonstrated to localize to lipid II, which is the penultimate precursor for cell wall biogenesis. This localization suggests two possible independent mechanisms of action, membrane pore formation and inhibition of peptidoglycan synthesis. Structure-activity studies with a truncated form of nisin lacking the two C-terminal (methyl)lanthionine rings and with non-pore forming mutants indicated that membrane disruption is essential for nisin-dependent inhibition of spore outgrowth to prevent membrane potential establishment. Finally, utilizing an in vitro infection model, it was shown that nisin reduced the viability of B. anthracis spores within an infection resulting in increased survival of immune cells while reducing infection-mediated cytokine expression. Fluorescence microscopy indicated that nisin localizes with spores within phagosomes of peritioneal macrophages in germinating conditions. These data demonstrate the effectiveness of nisin, as a model lantibiotic, for preventing spore outgrowth. It is speculated that nisin targeting of lipid II, resulting in membrane perturbations, may be effective at inhibiting the outgrowth of spores prepared from bacteria across a number of species.

An intimate link between antimicrobial peptide sequence diversity and binding to essential components of bacterial membranes

Antimicrobial peptides and proteins (AMPs) are widespread in the living kingdom. They are key effectors of defense reactions and mediators of competitions between organisms. They are often cationic and amphiphilic, which favors their interactions with the anionic membranes of microorganisms. Several AMP families do not directly alter membrane integrity but rather target conserved components of the bacterial membranes in a process that provides them with potent and specific antimicrobial activities. Thus, lipopolysaccharides (LPS), lipoteichoic acids (LTA) or the peptidoglycan precursor Lipid II are targeted by a broad series of AMPs. Studying the functional diversity of immune effectors tells us about the essential residues involved in AMP mechanism of action. Marine invertebrates have been found to produce a remarkable diversity of AMPs. Molluscan defensins and crustacean anti-LPS factors (ALF) are diverse in terms of amino acid sequence and show contrasted phenotypes in terms of antimicrobial activity. Their activity is directed essentially against Gram-positive or Gram-negative bacteria due their specific interactions with Lipid II or Lipid A, respectively. Through those interesting examples, we discuss here how sequence diversity generated throughout evolution informs us on residues required for essential molecular interaction at the bacterial membranes and subsequent antibacterial activity. Through the analysis of molecular variants having lost antibacterial activity or shaped novel functions, we also discuss the molecular bases of functional divergence in AMPs.

Utilização de quitosana obtida de resíduos de camarão para avaliar a capacidade de adsorção de íons Fe3+

A quitosana é produzida através de uma desacetilação alcalina da quitina, a qual é encontrada em exoesqueleto de crustáceos, parede celular de fungos e materiais biológicos. Calcula-se que os resíduos de camarão apresentam de 5 a 7% do seu peso total na forma de quitina, sugerindo que estes sejam utilizados para obtenção do biopolímero. Os processos para obtenção destes biopolímeros consiste nas seguintes etapas: desmineralização, desproteinização e desodorização, obtendo-se assim, a quitina úmida. Após seca, passa por uma desacetilação química para a conversão em quitosana úmida, sendo purificada e posteriormente seca. A quitosana, por apresentar grupamentos amino livres em sua estrutura, é uma molécula capaz de formar complexos estáveis com cátions metálicos. O objetivo geral deste trabalho foi obter quitina a partir de resíduos de camarão (Penaeus brasiliensis) com posterior produção de quitosana, e avaliar sua capacidade de complexação com íons Fe3+, em solução. A quitosana produzida foi caracterizada através do grau de desacetiliação e da massa molecular viscosimétrica, Para caracterização estrutural das amostras de quitosana, utilizaram-se espectrometria de infravermelho e espectrofotometria UV-Visível, bem como para o complexo formado de quitosana e ferro. Para analisar a eficiência da remoção deste íon, foram feitas análises em espectrometria de absorção atômica em chama e em espectrofotometria UV-Visível. Uma análise estatística foi realizada para avaliar a percentagem de remoção do íon ferro das soluções, sendo utilizado um planejamento fatorial em dois níveis, tendo como variáveis independentes o pH do meio, a quantidade de quitosana adicionada, a granulometria da mesma e o tempo de reação. A quitosana apresentou grau de desacetilação de 87±2% e massa molecular viscosimétrica de 196±4kDa, sendo esses valores, comparáveis à quitosana disponível comercialmente. Na melhor região de trabalho definida pela análise estatística, obteve-se uma remoção máxima de 85 % do íon ferro das soluções.

Avaliação da hidrólise alcalina da quitina e elaboração de filmes de quitosana para aplicação na adsorção do corante têxtil reativo preto 5

Nesta pesquisa, diferentes amostras de quitosana foram produzidas por diferentes condições de hidrólise alcalina da quitina. A partir das amostras de quitosana foram produzidos filmes,sendo estes aplicados na adsorção do corante têxtil reativo preto 5 e os resultados foram comparados com os dos seus respectivos pós. Os valores das massas molares da quitosana aumentaram em função do aumento do diâmetro da quitina e diminuíram com o aumento da relação de solução NaOH:quitina, da concentração de NaOH e tempo de reação, e ficaram na faixa de 100 a 200 kDa. Um comportamento inverso foi observado para o grau de desacetilação da quitosana, e seus valores variaram de 65 a 95%. Quanto aos filmes biopoliméricos elaborados, os que apresentaram melhores valores quanto as suas propriedades mecânicas e de permeabilidade ao vapor de água foram os filmes produzidos com quitosana de mais elevada massa molar e menor grau de desacetilação. A fim de avaliar o comportamento dos filmes em processos de adsorção, estes foram aplicados na remoção do corante reativo preto 5 (RB5) em diferentes condições de pH (4, 6 e 8). Após, foram escolhidos quatro filmes de quitosana (FQ), com diferentes graus de desacetilação e massas molares, que foram comparados com as quitosanas na forma de pó (PQ) no estudo de adsorção. Este foi realizado sob diversas condições experimentais (pH, temperatura e taxa de agitação) através das isotermas de equilíbrio, da termodinâmica e da cinética. Análises de interação e ciclos de adsorção-dessorção também foram realizados. Verificou-se que PQ e FQ com grau de desacetilação de 95% e massa molar de 100 kDa foram os adsorvente mais adequados, apresentando mais de 99% de remoção do corante RB5 em pH 4,0. Para ambos, PQ e FQ, o modelo de Langmuir foi o mais adequado para representar os dados de equilíbrio. As capacidades máximas de adsorção foram 654,3 e 589,5 mg g-1 para PQ e FQ, respectivamente, obtidos a 298 K. O processo de adsorção foi espontâneo, favorável e exotérmico. A adsorção de RB5 para PQ e FQ seguiu o modelo cinético de Elovich,e ocorreram interações eletrostáticas do PQ-RB5 e do FQ-RB5. Os filmes de quitosana foram reutilizados três vezes, enquanto que a quitosana em pó não pode ser reutilizada.

Biosynthesis and mode of action of ribosomally synthesized and post-translationally modified antimicrobial peptides

One of the greatest sources of biologically active compounds is natural products. Often these compounds serve as platforms for the design and development of novel drugs and therapeutics. The overwhelming amount of genomic information acquired in recent years has revealed that ribosomally synthesized and post-translationally modified natural products are much more widespread than originally anticipated. Identified in nearly all forms of life, these natural products display incredible structural diversity and possess a wide range of biological functions that include antimicrobial, antiviral, anti-inflammatory, antitumor, and antiallodynic activities. The unique pathways taken to biosynthesize these compounds offer exciting opportunities for the bioengineering of these complex molecules. The studies described herein focus on both the mode of action and biosynthesis of antimicrobial peptides. In Chapter 2, it is demonstrated that haloduracin, a recently discovered two-peptide lantibiotic, possesses nanomolar antimicrobial activity against a panel of bacteria strains. The potency of haloduracin rivals that of nisin, an economically and therapeutically relevant lantibiotic, which can be attributed to a similar dual mode of action. Moreover, it was demonstrated that this lantibiotic of alkaliphile origin has better stability at physiological pH than nisin. The molecular target of haloduracin was identified as the cell wall peptidoglycan precursor lipid II. Through the in vitro biosynthesis of haloduracin, several analogues of Halα were prepared and evaluated for their ability to inhibit peptidoglycan biosynthesis as well as bacterial cell growth. In an effort to overcome the limitations of in vitro biosynthesis strategies, a novel strategy was developed resulting in a constitutively active lantibiotic synthetase enzyme. This methodology, described in Chapter 3, enabled the production of fully-modified lacticin 481 products with proteinogenic and non-proteinogenic amino acid substitutions. A number of lacticin 481 analogues were prepared and their antimicrobial activity and ability to bind lipid II was assessed. Moreover, site-directed mutagenesis of the constitutively active synthetase resulted in a kinase-like enzyme with the ability to phosphorylate a number of peptide substrates. The hunt for a lantibiotic synthetase enzyme responsible for installing the presumed dehydro amino acids and a thioether ring in the natural product sublancin, led to the identification and characterization of a unique post-translational modification. The studies described in Chapter 4, demonstrate that sublancin is not a lantibiotic, but rather an unusual S-linked glycopeptide. Its structure was revised based on extensive chemical, biochemical, and spectroscopic characterization. In addition to structural investigation, bioinformatic analysis of the sublancin gene cluster led to the identification of an S-glycosyltransferase predicted to be responsible for the post-translational modification of the sublancin precursor peptide. The unprecedented glycosyltransferase was reconstituted in vitro and demonstrated remarkable substrate promiscuity for both the NDP-sugar co-substrate as well as the precursor peptide itself. An in vitro method was developed for the production of sublancin and analogues which were subsequently evaluated in bioactivity assays. Finally, a number of putative biosynthetic gene clusters were identified that appear to harbor the necessary genes for production of an S-glycopeptide. An additional S-glycosyltransferase with more favorable intrinsic properties including better expression, stability, and solubility was reconstituted in vitro and demonstrated robust catalytic abilities.