Genetic characterization of native and introduced populations of the neotropical cichlid genus Cichla in Brazil

A molecular phylogenetic analysis based on mitochondrial 16S ribosomal DNA and Control Region sequences from native and introduced populations was undertaken, in order to characterize the introduction of Cichla (peacock bass or tucunaré) species in Brazil. Mitochondrial DNA haplotypes found in introduced fish from Minas Gerais state (southeastern Brazil) clustered only with those from native species of the Tocantins River (Cichla piquiti and C. kelberi), thereby suggesting a single or, at most, few translocation acts in this area, even though with fish from the same source-population. Our study contributes to an understanding of the introduction of Cichla in regions of Brazil outside the Amazon basin, and adds phylogenetic data to the recently describe Cichla species, endemic from the Tocantins-Araguaia basin.

A pesca comercial dos tucunarés Cichla Spp. (Peciformes, Cichlidae) no Reservatório da UHE-Tucuruí, Rio Tocantins, PA

A pesca na Amazônia se destaca entre as regiões brasileiras pela riqueza de espécies exploradas, quantidade de pescado capturado e dependência da população a esta atividade. Este estudo descreve a pesca comercial dos “tucunarés” Cichla spp. no Baixo Rio Tocantins-PA, norte do Brasil, na área de influência da UHE-Tucuruí, com ênfase no reservatório. O estudo foi dividido em 2 capítulos. O primeiro descreve a pesca em relação às artes de pesca, estratégia dos pescadores, ambientes explorados, sazonalidade e o manejo local segundo a percepção dos pescadores. Ainda neste capítulo, foram analisados o conhecimento local dos pescadores, a classificação etnobiológica dos “tucunarés”, e aspectos sócio-econômicos e ecológicos envolvidos. Foram realizadas entrevistas com os pescadores e observações diretas em campo. A pesca dos “tucunarés” no lago da usina tem grande importância na vida sócio-econômica desses pescadores, e se caracteriza como principal fonte de renda. A pesca ocorre em locais específicos e utiliza métodos e equipamentos rudimentares. Segundo os pescadores, a produção é influenciada por variáveis ambientais e pelo uso da rede de emalhar, a qual afasta os “tucunarés” dos ambientes de pesca. O uso do espaço é o principal conflito entre os pescadores. As relações sociais no sistema de parceria e a presença do atravessador diminuem a rentabilidade da pesca para o pescador. Os pescadores possuem conhecimento consistente sobre a ecologia dos “tucunarés”. O seu sistema de classificação reconhece três etnoespécies, duas das quais, constituem uma única espécie científica. No capítulo II, são analisados dados de captura dos “tucunarés” coletados pela ELETRONORTE de 1997 a 2003 e a unidade de esforço de pesca mais adequada para os dados. A captura foi analisada por porto, arte de pesca, tipo de embarcação, área de pesca e ciclo de enchente do rio. Os dados demonstram que as frotas dos diferentes municípios possuem características próprias e exploram as áreas de pesca mais próximas. Os maiores níveis de captura são encontrados nos períodos que o nível do rio está subindo ou descendo, sendo a pesca com “caniço”, responsável pela maior parte da captura. As canoas são as embarcações mais utilizadas. Os dados demonstram que a pesca dos “tucunarés” é mais importante nos municípios e áreas de pesca localizados no lago da usina. A CPUE só apresenta comportamento estatístico adequado quando analisada por área de pesca e as unidades de esforço mais adequadas são números de pescadores e de dias de pesca após sofrerem transformação logarítmica.

Endohelminths in Cichla piquiti (Perciformes, Cichlidae) from the Paraná River, São Paulo State, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

Medulloblastoma, the most common malignant paediatric brain tumour, is currently treated with nonspecific cytotoxic therapies including surgery, whole-brain radiation, and aggressive chemotherapy. As medulloblastoma exhibits marked intertumoural heterogeneity, with at least four distinct molecular variants, previous attempts to identify targets for therapy have been underpowered because of small samples sizes. Here we report somatic copy number aberrations (SCNAs) in 1,087 unique medulloblastomas. SCNAs are common in medulloblastoma, and are predominantly subgroup-enriched. The most common region of focal copy number gain is a tandem duplication of SNCAIP, a gene associated with Parkinson's disease, which is exquisitely restricted to Group 4 alpha. Recurrent translocations of PVT1, including PVT1-MYC and PVT1-NDRG1, that arise through chromothripsis are restricted to Group 3. Numerous targetable SCNAs, including recurrent events targeting TGF-beta signalling in Group 3, and NF-kappa B signalling in Group 4, suggest future avenues for rational, targeted therapy.

The full Fisher matrix for galaxy surveys

Starting from the Fisher matrix for counts in cells, we derive the full Fisher matrix for surveys of multiple tracers of large-scale structure. The key step is the classical approximation, which allows us to write the inverse of the covariance of the galaxy counts in terms of the naive matrix inverse of the covariance in a mixed position-space and Fourier-space basis. We then compute the Fisher matrix for the power spectrum in bins of the 3D wavenumber , the Fisher matrix for functions of position (or redshift z) such as the linear bias of the tracers and/or the growth function and the cross-terms of the Fisher matrix that expresses the correlations between estimations of the power spectrum and estimations of the bias. When the bias and growth function are fully specified, and the Fourier-space bins are large enough that the covariance between them can be neglected, the Fisher matrix for the power spectrum reduces to the widely used result that was first derived by Feldman, Kaiser & Peacock. Assuming isotropy, a fully analytical calculation of the Fisher matrix in the classical approximation can be performed in the case of a constant-density, volume-limited survey.

The incidence and health economic burden of ischemic amputation in Minnesota, 2005-2008

Critical limb ischemia (CLI) is the most severe manifestation of peripheral artery disease (PAD), is associated with high rates of myocardial infarction, stroke, and amputation, and has a high health economic cost. The objective of this study was to estimate the incidence of lower limb amputation, the most serious consequence of CLI, and to create a surveillance methodology for the incidence of ischemic amputation in Minnesota.

A Staphylococcus xylosus isolate with a new mecC allotype

Recently, a novel variant of mecA known as mecC (mecA(LGA251)) was identified in Staphylococcus aureus isolates from both humans and animals. In this study, we identified a Staphylococcus xylosus isolate that harbors a new allotype of the mecC gene, mecC1. Whole-genome sequencing revealed that mecC1 forms part of a class E mec complex (mecI-mecR1-mecC1-blaZ) located at the orfX locus as part of a likely staphylococcal cassette chromosome mec element (SCCmec) remnant, which also contains a number of other genes present on the type XI SCCmec.

The FReedom from Ischemic Events-New Dimensions for Survival (FRIENDS) registry: design of a prospective cohort study of patients with advanced peripheral artery disease.

BACKGROUND Advanced lower extremity peripheral artery disease (PAD), whether presenting as acute limb ischemia (ALI) or chronic critical limb ischemia (CLI), is associated with high rates of cardiovascular ischemic events, amputation, and death. Past research has focused on strategies of revascularization, but few data are available that prospectively evaluate the impact of key process of care factors (spanning pre-admission, acute hospitalization, and post-discharge) that might contribute to improving short and long-term health outcomes. METHODS/DESIGN The FRIENDS registry is designed to prospectively evaluate a range of patient and health system care delivery factors that might serve as future targets for efforts to improve limb and systemic outcomes for patients with ALI or CLI. This hypothesis-driven registry was designed to evaluate the contributions of: (i) pre-hospital limb ischemia symptom duration, (ii) use of leg revascularization strategies, and (iii) use of risk-reduction pharmacotherapies, as pre-specified factors that may affect amputation-free survival. Sequential patients would be included at an index "vascular specialist-defined" ALI or CLI episode, and patients excluded only for non-vascular etiologies of limb threat. Data including baseline demographics, functional status, co-morbidities, pre-hospital time segments, and use of medical therapies; hospital-based use of revascularization strategies, time segments, and pharmacotherapies; and rates of systemic ischemic events (e.g., myocardial infarction, stroke, hospitalization, and death) and limb ischemic events (e.g., hospitalization for revascularization or amputation) will be recorded during a minimum of one year follow-up. DISCUSSION The FRIENDS registry is designed to evaluate the potential impact of key factors that may contribute to adverse outcomes for patients with ALI or CLI. Definition of new "health system-based" therapeutic targets could then become the focus of future interventional clinical trials for individuals with advanced PAD.

The impact of prolonged lower limb ischemia on amputation, mortality, and functional status: the FRIENDS registry.

BACKGROUND Peripheral artery disease (PAD) is a major cause of cardiovascular ischemic events and amputation. Knowledge gaps exist in defining and measuring key factors that predict these events. The objective of this study was to assess whether duration of limb ischemia would serve as a major predictor of limb and patient survival. METHODS The FReedom from Ischemic Events: New Dimensions for Survival (FRIENDS) registry enrolled consecutive patients with limb-threatening peripheral artery disease at a single tertiary care hospital. Demographic information, key clinical care time segments, functional status and use of revascularization, and pharmacotherapy data were collected at baseline, and vascular ischemic events, cardiovascular mortality, and all-cause mortality were recorded at 30 days and 1 year. RESULTS A total of 200 patients with median (interquartile range) age of 76 years (65-84 years) were enrolled in the registry. Median duration of limb ischemia was 0.75 days for acute limb ischemia (ALI) and 61 days for chronic critical limb ischemia (CLI). Duration of limb ischemia of <12, 12 to 24, and >24 hours in patients with ALI was associated with much higher rates of first amputation (P = .0002) and worse amputation-free survival (P = .037). No such associations were observed in patients with CLI. CONCLUSIONS For individuals with ischemic symptoms <14 days, prolonged limb ischemia is associated with higher 30-day and 1-year amputation, systemic ischemic event rates, and worse amputation-free survival. No such associations are evident for individuals with chronic CLI. These data imply that prompt diagnosis and revascularization might improve outcomes for patients with ALI.

Birth date predicts alternative life-history pathways in a fish with sequential reproductive tactics

1.In species with plastic expression of alternative reproductive tactics (ARTs), individuals of the same sex, usually males, can adopt different reproductive tactics depending on factors such as body size. 2.The ‘birth date hypothesis’ proposes that condition-dependent expression of ARTs may ultimately depend on birth date, because individuals born at different times of the year may achieve different sizes and express different reproductive tactics accordingly. However, this has rarely been tested. 3.Here, we tested this hypothesis in a fish with ARTs, the peacock blenny (Salaria pavo). A long-term (6 years) mark–recapture study demonstrated that ARTs in the peacock blenny were sequential and that males may follow at least two alternative life-history pathways: a nest-holder pathway, in which males express the nest-holder tactic from their first breeding season onwards, and a parasitic pathway, where males reproduce on their first breeding season as sneaker males and subsequently as nest-holders. 4.We have found evidence of a birth date effect on the expression of ARTs in the peacock blenny. Males following the nest-holder pathway are born earlier and are larger at the first breeding season than males following the parasitic pathway, but they have similar growth curves. 5.The mechanisms underlying a birth date effect are far from clear and might be diverse. We have not found support for a mechanism of body size threshold triggering sexual maturation and subsequent ARTs. A mechanism of tactic determination that is strictly based on timing of first maturation is also unlikely. 6.A proxy of lifetime reproductive success shows crossing (body size associated) fitness curves for the two main life-history pathways.

Al costado, más acá : Thomas de Quincey y su ubicación en el canon del romanticismo inglés

Por la fecha de su nacimiento, De Quincey quedó ubicado junto a los poetas de la segunda generación romántica, Hunt, Byron, Shelley, Keats, Peacock, etc. Pero su recorrido biográfico lo acercó a los Lake Poets, en especial a Wordsworth y Coleridge. El trabajo repone algunas conexiones históricas entre De Quincey y esos dos poetas de la primera generación y propone algunas hipótesis sobre las repercusiones del vínculo. La hipótesis principal es que la situación de lector e intérprete, producto de su marca generacional, habría enfrentado a De Quincey, en tanto autor, con la experiencia de las mediaciones del lenguaje, la historia y la publicidad. El modo de sus críticas a los Lake Poets estaría sustentado en esa experiencia. Éste -la compleja relación con los laquistas- sería uno de los factores más importantes, junto con el estudio de los alemanes, la tradición satírica y el trabajo periodístico, para el desarrollo posterior de su poética.