Descrição de uma espécie nova de Pimelodus (Siluriformes, Pimelodidae) da bacia do alto rio Paraguai

Uma espécie nova, correntemente identificada como P. maculatus La Cepède, 1803, é descrita. Ela difere das demais espécies do gênero, exceto de P. maculatus e P. mysteriosus Azpelicueta, 1998, pelo padrão de colorido com máculas escuras sobre os flancos. A nova espécie é morfometricamente similar a P. argenteus Perugia, 1891 e P. mysteriosus, mas difere destas, respectivamente, pelo padrão de colorido maculado e pelo menor comprimento do barbilhão maxilar. Difere de P. maculatus por apresentar o processo supra-occipital mais robusto, com a base quase tão larga quanto o comprimento (versus mais comprido do que largo); narinas anteriores a 25% da margem anterior do focinho, na distância entre o início do focinho até as narinas posteriores (versus 33% dessa distância); serrilhas do acúleo peitoral mais desenvolvidas e presentes em mais da metade da margem anterior do acúleo (versus serrilhas leves e presentes em menos da metade desta margem); pele que recobre a cabeça muito fina, tornando conspícuas as estrias da superfície dos ossos; 22-27 (moda=24) rastros no primeiro arco branquial [versus 19-24 (moda=21)]. Também foi discriminado de P. maculatus na análise morfométrica multivariada das variáveis canônicas livres do tamanho, por apresentar maiores valores da distância interorbital, largura da boca e comprimento do barbilhão maxilar e menor comprimento da base da nadadeira adiposa.

Disseny gràfic amb programari lliure

En aquest treball es farà una introducció al programari lliure i els sistemes GNU/Linux, es realitzarà un anàlisi comparatiu de diferents aplicacions propietàries enfront aplicacions lliures en el camp del disseny gràfic i sobre diferents temàtiques (edició d¿imatges, edició d¿imatges vectorials, maquetació i publicació, animació 2D i 3D, etc.), s¿estudiaran diverses distribucions de sistemes GNU/Linux orientades al disseny i als entorns multimèdia i, finalment, s¿estudiaran diferents mètodes per treballar amb aplicacions i sistemes propietaris des d¿algun d¿aquests sistemes (mitjançant un emulador de Windows o instal¿lant un programa de virtualització).

Disseny gràfic amb programari lliure - Presentació

Aquesta presentació representa un resum visual sobre la memòria del TFC Disseny gràfic amb programari lliure on es representa de manera esquemàtica una introducció al programari lliure i els sistemes GNU/Linux, es realitzarà un anàlisi comparatiu de diferents aplicacions propietàries enfront aplicacions lliures en el camp del disseny gràfic i sobre diferents temàtiques (edició d'imatges, edició d'imatges vectorials, maquetació i publicació, animació 2D i 3D, etc.), diverses distribucions de sistemes GNU/Linux orientades al disseny i als entorns multimèdia i, finalment, es presentaran diferents mètodes per treballar amb aplicacions i sistemes propietaris des d'algun d'aquests sistemes (mitjançant un emulador de Windows o instal·lant un programa de virtualització).

Functionalized nanostructures with application in regenerative medicine

In the last decade, both regenerative medicine and nanotechnology have been broadly developed leading important advances in biomedical research as well as in clinical practice. The manipulation on the molecular level and the use of several functionalized nanoscaled materials has application in various fields of regenerative medicine including tissue engineering, cell therapy, diagnosis and drug and gene delivery. The themes covered in this review include nanoparticle systems for tracking transplanted stem cells, self-assembling peptides, nanoparticles for gene delivery into stem cells and biomimetic scaffolds useful for 2D and 3D tissue cell cultures, transplantation and clinical application.

CODAPACK3D. A new version of Compositional Data Package

The statistical analysis of compositional data should be treated using logratios of parts,which are difficult to use correctly in standard statistical packages. For this reason afreeware package, named CoDaPack was created. This software implements most of thebasic statistical methods suitable for compositional data.In this paper we describe the new version of the package that now is calledCoDaPack3D. It is developed in Visual Basic for applications (associated with Excel©),Visual Basic and Open GL, and it is oriented towards users with a minimum knowledgeof computers with the aim at being simple and easy to use.This new version includes new graphical output in 2D and 3D. These outputs could bezoomed and, in 3D, rotated. Also a customization menu is included and outputs couldbe saved in jpeg format. Also this new version includes an interactive help and alldialog windows have been improved in order to facilitate its use.To use CoDaPack one has to access Excel© and introduce the data in a standardspreadsheet. These should be organized as a matrix where Excel© rows correspond tothe observations and columns to the parts. The user executes macros that returnnumerical or graphical results. There are two kinds of numerical results: new variablesand descriptive statistics, and both appear on the same sheet. Graphical output appearsin independent windows. In the present version there are 8 menus, with a total of 38submenus which, after some dialogue, directly call the corresponding macro. Thedialogues ask the user to input variables and further parameters needed, as well aswhere to put these results. The web site http://ima.udg.es/CoDaPack contains thisfreeware package and only Microsoft Excel© under Microsoft Windows© is required torun the software.Kew words: Compositional data Analysis, Software

Modelling of non-linear viscoelastic tissues with bar elements

In this work we develop a viscoelastic bar element that can handle multiple rheo- logical laws with non-linear elastic and non-linear viscous material models. The bar element is built by joining in series an elastic and viscous bar, constraining the middle node position to the bar axis with a reduction method, and stati- cally condensing the internal degrees of freedom. We apply the methodology to the modelling of reversible softening with sti ness recovery both in 2D and 3D, a phenomenology also experimentally observed during stretching cycles on epithelial lung cell monolayers.

SwissTargetPrediction: a web server for target prediction of bioactive small molecules.

Bioactive small molecules, such as drugs or metabolites, bind to proteins or other macro-molecular targets to modulate their activity, which in turn results in the observed phenotypic effects. For this reason, mapping the targets of bioactive small molecules is a key step toward unraveling the molecular mechanisms underlying their bioactivity and predicting potential side effects or cross-reactivity. Recently, large datasets of protein-small molecule interactions have become available, providing a unique source of information for the development of knowledge-based approaches to computationally identify new targets for uncharacterized molecules or secondary targets for known molecules. Here, we introduce SwissTargetPrediction, a web server to accurately predict the targets of bioactive molecules based on a combination of 2D and 3D similarity measures with known ligands. Predictions can be carried out in five different organisms, and mapping predictions by homology within and between different species is enabled for close paralogs and orthologs. SwissTargetPrediction is accessible free of charge and without login requirement at http://www.swisstargetprediction.ch.

Interaction of cationic ultrasmall superparamagnetic iron oxide nanoparticles with human melanoma cells.

Ultrasmall superparamagnetic iron oxide nanoparticles (USPIONs) are currently under development for the intracellular delivery of therapeutics. However, the mechanisms of cellular uptake and the cellular reaction to this uptake, independent of therapeutics, are not well defined. The interactions of biocompatible cationic aminoUSPIONs with human cells was studied in 2D and 3D cultures using biochemical and electron microscopy techniques. AminoUSPIONs were internalized by human melanoma cells in 2D and 3D cultures. Uptake was clathrin mediated and the particles localized in lysosomes, inducing activation of the lysosomal cathepsin D and decreasing the expression of the transferrin receptor in human melanoma cells and/or skin fibroblasts. AminoUSPIONs deeply invaded 3D spheroids of human melanoma cells. Thus, aminoUSPIONs can invade tumors and their uptake by human cells induces cell reaction.

Parallel imaging with phase scrambling.

PURPOSE: Most existing methods for accelerated parallel imaging in MRI require additional data, which are used to derive information about the sensitivity profile of each radiofrequency (RF) channel. In this work, a method is presented to avoid the acquisition of separate coil calibration data for accelerated Cartesian trajectories. METHODS: Quadratic phase is imparted to the image to spread the signals in k-space (aka phase scrambling). By rewriting the Fourier transform as a convolution operation, a window can be introduced to the convolved chirp function, allowing a low-resolution image to be reconstructed from phase-scrambled data without prominent aliasing. This image (for each RF channel) can be used to derive coil sensitivities to drive existing parallel imaging techniques. As a proof of concept, the quadratic phase was applied by introducing an offset to the x(2) - y(2) shim and the data were reconstructed using adapted versions of the image space-based sensitivity encoding and GeneRalized Autocalibrating Partially Parallel Acquisitions algorithms. RESULTS: The method is demonstrated in a phantom (1 × 2, 1 × 3, and 2 × 2 acceleration) and in vivo (2 × 2 acceleration) using a 3D gradient echo acquisition. CONCLUSION: Phase scrambling can be used to perform parallel imaging acceleration without acquisition of separate coil calibration data, demonstrated here for a 3D-Cartesian trajectory. Further research is required to prove the applicability to other 2D and 3D sampling schemes. Magn Reson Med, 2014. © 2014 Wiley Periodicals, Inc.

Three-dimensional patient-specific dosimetry in radioimmunotherapy with 90Y-ibritumomab-tiuxetan.

Aim of the present article was to perform three-dimensional (3D) single photon emission tomography-based dosimetry in radioimmunotherapy (RIT) with (90)Y-ibritumomab-tiuxetan. A custom MATLAB-based code was used to elaborate 3D images and to compare average 3D doses to lesions and to organs at risk (OARs) with those obtained with planar (2D) dosimetry. Our 3D dosimetry procedure was validated through preliminary phantom studies using a body phantom consisting of a lung insert and six spheres with various sizes. In phantom study, the accuracy of dose determination of our imaging protocol decreased when the object volume decreased below 5 mL, approximately. The poorest results were obtained for the 2.58 mL and 1.30 mL spheres where the dose error evaluated on corrected images with regard to the theoretical dose value was -12.97% and -18.69%, respectively. Our 3D dosimetry protocol was subsequently applied on four patients before RIT with (90)Y-ibritumomab-tiuxetan for a total of 5 lesions and 4 OARs (2 livers, 2 spleens). In patient study, without the implementation of volume recovery technique, tumor absorbed doses calculated with the voxel-based approach were systematically lower than those calculated with the planar protocol, with average underestimation of -39% (range from -13.1% to -62.7%). After volume recovery, dose differences reduce significantly, with average deviation of -14.2% (range from -38.7.4% to +3.4%, 1 overestimation, 4 underestimations). Organ dosimetry in one case overestimated, in the other underestimated the dose delivered to liver and spleen. However, both for 2D and 3D approach, absorbed doses to organs per unit administered activity are comparable with most recent literature findings.

A Web a Três Dimensões

A utilização da Web para a divulgação de produtos e negócios através da Internet já não é novidade, novidade é a Web3D2, uma nova tecnologia concebido para lhe proporcionar inúmeros momentos de interactividade e dinamismo. Pretende-se assim fazer uma pequena abordagem dos objectos 3D na WWW, passando uma visão sobre a Web, identificando algumas as funcionalidades e serviços, a visualização de objecto 3D na Web, os navegadores comuns e os visualizadores que permitem visualizar conteúdos tanto 2D como 3D. Pretende-se desta forma partilhar e dar a conhecer os trabalhos e os avanços conseguidos na criação da das tecnologias Web3D, iniciando com uma contextualização da Web3D, fazendo uma passagem pelos mundos virtuais na Internet criados em Virtual Reality Modeling Language, realçando as dificuldades dessa linguagem na altura e os novos incentivos que deram origem a outras especificação como a X3D. Ainda são identificadas algumas plataformas e ferramentas de tecnologia Web3D, exemplos de algumas áreas onde se aplicam e a perspectiva para o futuro da Web3D centrada na visão do Web3D consortium.

Desenvolvimento de objectos tridimensionais na Web

Este trabalho de uma forma geral pretende apresentar os progressos realizados na área da Web3D, e que este sirva de guia para os potenciais interessados em descobrir as maravilhas que a tecnologia Web3D proporciona. Começa-se por fazer uma alusão sobre os objectos tridimensionais e mencionar exemplos de algumas áreas onde se aplicam. Depois é feita uma pequena abordagem do enquadramento dos objectos 3D na WWW, passando uma visão sobre a Web, identificando as funcionalidades e serviços, por fim uma vista de olhos sobre a visualização de objecto 3D na Web, identificando os navegadores comuns e os visualizadores que permitem visualizar conteúdos tanto 2D como 3D. A seguir são abordados os avanços conseguidos na Web3D, iniciando com uma contextualização da Web3D, fazendo uma passagem pelos mundos virtuais na Internet criados em Virtual Reality Modeling Language, realçando as dificuldades dessa linguagem na altura e os novos incentivos que deram origem a outras especificação como a X3D. Ainda são identificadas algumas plataformas e ferramentas de tecnologia Web3D, exemplos de algumas áreas onde se aplicam e a perspectiva para o futuro da Web3D centrada na visão do Web3D consortium. Por último, apresenta-se um caso prático onde estão descritas as etapas da construção, em modelo proposto, conversão e disponibilização do objecto 3D na Web

Tc-99m-MAA SPECT-derived tumor-to-normal liver ratios for partition model dosimetry in selective internal radiation therapy (SIRT)

Aim: When planning SIRT using 90Y microspheres, the partition model is used to refine the activity calculated by the body surface area (BSA) method to potentially improve the safety and efficacy of treatment. For this partition model dosimetry, accurate determination of mean tumor-to-normal liver ratio (TNR) is critical since it directly impacts absorbed dose estimates. This work aimed at developing and assessing a reliable methodology for the calculation of 99mTc-MAA SPECT/CT-derived TNR ratios based on phantom studies. Materials and methods: IQ NEMA (6 hot spheres) and Kyoto liver phantoms with different hot/background activity concentration ratios were imaged on a SPECT/CT (GE Infinia Hawkeye 4). For each reconstruction with the IQ phantom, TNR quantification was assessed in terms of relative recovery coefficients (RC) and image noise was evaluated in terms of coefficient of variation (COV) in the filled background. RCs were compared using OSEM with Hann, Butterworth and Gaussian filters, as well as FBP reconstruction algorithms. Regarding OSEM, RCs were assessed by varying different parameters independently, such as the number of iterations (i) and subsets (s) and the cut-off frequency of the filter (fc). The influence of the attenuation and diffusion corrections was also investigated. Furthermore, both 2D-ROIs and 3D-VOIs contouring were compared. For this purpose, dedicated Matlab© routines were developed in-house for automatic 2D-ROI/3D-VOI determination to reduce intra-user and intra-slice variability. Best reconstruction parameters and RCs obtained with the IQ phantom were used to recover corrected TNR in case of the Kyoto phantom for arbitrary hot-lesion size. In addition, we computed TNR volume histograms to better assess uptake heterogeneityResults: The highest RCs were obtained with OSEM (i=2, s=10) coupled with the Butterworth filter (fc=0.8). Indeed, we observed a global 20% RC improvement over other OSEM settings and a 50% increase as compared to the best FBP reconstruction. In any case, both attenuation and diffusion corrections must be applied, thus improving RC while preserving good image noise (COV<10%). Both 2D-ROI and 3D-VOI analysis lead to similar results. Nevertheless, we recommend using 3D-VOI since tumor uptake regions are intrinsically 3D. RC-corrected TNR values lie within 17% around the true value, substantially improving the evaluation of small volume (<15 mL) regions. Conclusions: This study reports the multi-parameter optimization of 99mTc MAA SPECT/CT images reconstruction in planning 90Y dosimetry for SIRT. In phantoms, accurate quantification of TNR was obtained using OSEM coupled with Butterworth and RC correction.

Evidence of extended orientational order in amorphous Fe/Sm thin films

Amorphous thin films of Fe/Sm, prepared by evaporation methods, have been magnetically characterized and the results were interpreted in terms of the random magnets theory. The samples behave as 2D and 3D random magnets depending on the total thickness of the film. From our data the existence of orientational order, which greatly influences the magnetic behavior of the films, is also clear.

Evidence of extended orientational order in amorphous Fe/Sm thin films

Amorphous thin films of Fe/Sm, prepared by evaporation methods, have been magnetically characterized and the results were interpreted in terms of the random magnets theory. The samples behave as 2D and 3D random magnets depending on the total thickness of the film. From our data the existence of orientational order, which greatly influences the magnetic behavior of the films, is also clear.