Determination of degree of ionization of poly(allylamine hydrochloride) (PAH) and poly[1-[4-(3-carboxy‑4 hydroxyphenylazo)benzene sulfonamido]-1,2-ethanediyl, sodium salt] (PAZO) in layer-by-layer films using vacuum photoabsorption spectroscopy

Electrostatic and hydrophobic interactions govern most of the properties of supramolecular systems, which is the reason determining the degree of ionization of macromolecules has become crucial for many applications. In this paper, we show that highresolution ultraviolet spectroscopy (VUV) can be used to determine the degree of ionization and its effect on the electronic excitation energies of layer-by-layer (LbL) films of poly(allylamine hydrochloride) (PAH) and poly[1-[4-(3-carboxy-4 hydroxyphenylazo)- benzene sulfonamido]-1,2-ethanediyl, sodium salt] (PAZO). A full assignment of the VUV peaks of these polyelectrolytes in solution and in cast or LbL films could be made, with their pH dependence allowing us to determine the p'K IND. a' using the Henderson-Hasselbach equation. The p'K IND. a' for PAZO increased from ca. 6 in solution to ca. 7.3 in LbL films owing to the charge transfer from PAH. Significantly, even using solutions at a fixed pH for PAH, the amount adsorbed on the LbL films still varied with the pH of the PAZO solutions due to these molecular-level interactions. Therefore, the procedure based on a comparison of VUV spectra from solutions and films obtained under distinct conditions is useful to determine the degree of dissociation of macromolecules, in addition to permitting interrogation of interface effects in multilayer films.

Calix[4]arenes in the 1,3-alternate conformation

Calix[4]arenes fixed in the 1,3-alternate conformation offer an interesting platform for the attachment of further functionalities which has been less frequently used than the cone conformer. Several synthetic strategies were developed to attach four amino functions to the narrow rim, to the wide rim and to both rims of the calix[4]arene fixed in the 1,3-alternate conformation. Using different precursor groups (nitrile/phthalimide or nitro/phthalimide) which can be independently converted into amino functions opens the possibility to attach further groups selectively to the amino functions. Here the groups which is newly attached will determine the reaction sequence.

Addizioni organocatalitiche asimmetriche di 1,3-dicarbonili a orto-chinoni metidi. Un nuovo metodo per la sintesi di 3,4-diidrocumarine e 4h-cromeni otticamente attivi

Questa tesi descrive lo sviluppo di una nuova metodologia che prevede l’utilizzo degli orto-chinoni metidi (o-QMs) in reazioni organocatalitiche asimmetriche. A causa della loro elevata instabilità e reattività, gli o-QMs sono stati impiegati in trasformazioni di sintesi asimmetrica solo di recente. Il metodo sviluppato prevede l’utilizzo di catalizzatori bifunzionali in grado di promuovere la generazione in situ degli intermedi reattivi a partire dai rispettivi 2-solfonilalchil fenoli, tramite eliminazione di acido solfinico. L’utilizzo di condizioni blandamente basiche sia per generare gli o-QMs che per l’attivazione dei partner nucleofili, risulta innovativo e permette non solo di ovviare all’intrinseca instabilità di questi intermedi, ma anche di impiegarli efficacemente in reazioni organocatalitiche con una varietà di nucleofili, come, ad esempio, l’acido di Meldrum, il malononitrile e vari composti 1,3 dicarbonilici. Le reazioni catalitiche portano alla formazione di 3,4-diidrocumarine, 4H-cromeni e xantenoni enantioarricchiti. Alcuni di questi composti sono dei precursori sintetici di composti naturali o sintetici biologicamente attivi e per avvalorare questa metodologia sono state proposte le sintesi formali di tre composti di interesse biologico: la (R)-tolterodina (il principio attivo del farmaco antimuscarinico Detrol®), (S)-4-metossidalbergione (allergene della Dalbergia Nigra) and SB-209670 / SB-217242 (due potenti antagonisti dell’endotelina).

A Facile synthesis of 3-Methylene-4-aryl-1,3,4,5-tetrahydro-benzo[b][1,4] di-azepin-2-ones and 3-arylemethylene-4,5-dihydro-3H-benzo[b][1,4]diazepin-2-ylamines

A simple and convenient synthesis of 3-methylene-4-aryl-1,3,4,5-tetrahydro-benzo[b][1,4] diazepin-2-ones was accomplished by the SN2 nucleophilic substitution of the acetates of Baylis-Hillman adducts of acrylate with 1,2-phenylenediamines followed by base-mediated intramolecular cyclization. On the other hand similar substrates derived from the Baylis-Hillman adducts of acrylonitrile via Pinner’s reaction leads to 3-arylmethylene-4,5-dihydro-3H-benzo[b][1,4]diazepin-2-ylamines in good yields..

Base pairing and miscoding properties of 1,N(6)-ethenoadenine- and 3,N(4)-ethenocytosine-containing RNA oligonucleotides

Two RNA phosphoramidites containing the bases 1,N(6)-ethenoadenine (εA) and 3,N(4)-ethenocytosine (εC) were synthesized. These building blocks were incorporated into two 12-mer oligoribonucleotides for evaluation of the base pairing properties of these base lesions by UV melting curve (Tm) and circular dichroism measurements. The Tm data of the resulting duplexes with the etheno modifications opposing all natural bases showed a substantial destabilization compared to the corresponding natural duplexes, confirming their inability to form base pairs. The coding properties of these lesions were further investigated by introducing them into 31-mer oligonucleotides and assessing their ability to serve as templates in primer extension reactions with HIV, AMV, and MMLV reverse transcriptases (RT). Primer extension reactions showed complete arrest of the incorporation process using MMLV RT and AMV RT, while HIV RT preferentially incorporates dAMP opposite εA and dAMP as well as dTMP opposite εC. The properties of these RNA lesions are discussed in the context of its putative biological role.