927 resultados para ecomorphological divergence, non-parallelism, parallelism, secondary contact, stickleback
Resumo:
Several types of parallelism can be exploited in logic programs while preserving correctness and efficiency, i.e. ensuring that the parallel execution obtains the same results as the sequential one and the amount of work performed is not greater. However, such results do not take into account a number of overheads which appear in practice, such as process creation and scheduling, which can induce a slow-down, or, at least, limit speedup, if they are not controlled in some way. This paper describes a methodology whereby the granularity of parallel tasks, i.e. the work available under them, is efficiently estimated and used to limit parallelism so that the effect of such overheads is controlled. The run-time overhead associated with the approach is usually quite small, since as much work is done at compile time as possible. Also, a number of run-time optimizations are proposed. Moreover, a static analysis of the overhead associated with the granularity control process is performed in order to decide its convenience. The performance improvements resulting from the incorporation of grain size control are shown to be quite good, specially for systems with médium to large parallel execution overheads.
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Although studies of a number of parallel implementations of logic programming languages are now available, the results are difficult to interpret due to the multiplicity of factors involved, the effect of each of which is difficult to sepárate. In this paper we present the results of a highlevel simulation study of or- and independent and-parallelism with a wide selection of Prolog programs that aims to facilítate this separation. We hope this study will be instrumental in better understanding and comparing results from actual implementations, as shown by an example in the paper. In addition, the paper examines some of the issues and tradeoffs associated with the combination of and- and or-parallelism and proposes reasonable solutions based on the simulation data.
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Independent and-parallelism, dependent and-parallelism and or-parallelism are the three main forms of implicit parallelism present in logic programs. In this paper we present a model, IDIOM, which exploits all three forms of parallelism in a single framework. IDIOM is based on a combination of the Basic Andorra Model and the Extended And-Or Tree Model. Our model supports both Prolog as well as the fíat concurrent logic languages. We discuss the issues that arise in combining the three forms of parallelism, and our solutions to them. We also present an implementation scheme, based on binding arrays, for implementing IDIOM.
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There has been significant interest in parallel execution models for logic programs which exploit Independent And-Parallelism (IAP). In these models, it is necessary to determine which goals are independent and therefore eligible for parallel execution and which goals have to wait for which others during execution. Although this can be done at run-time, it can imply a very heavy overhead. In this paper, we present three algorithms for automatic compiletime parallelization of logic programs using IAP. This is done by converting a clause into a graph-based computational form and then transforming this graph into linear expressions based on &-Prolog, a language for IAP. We also present an algorithm which, given a clause, determines if there is any loss of parallelism due to linearization, for the case in which only unconditional parallelism is desired. Finally, the performance of these annotation algorithms is discussed for some benchmark programs.
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An Independent And-Parallel Prolog model and implementation, &-Prolog, are described. The description includes a summary of the system's architecture, some details of its execution model (based on the RAP-WAM model), and most importantly, its performance on sequential workstations and shared memory multiprocessors as compared with state-of-the-art Prolog systems. Speedup curves are provided for a collection of benchmark programs which demónstrate significant speed advantages over state-of the art sequential systems.
Complete and efficient methods for supporting side effects in independent/restricted and-parallelism
Resumo:
It has been shown that it is possible to exploit Independent/Restricted And-parallelism in logic programs while retaining the conventional "don't know" semantics of such programs. In particular, it is possible to parallelize pure Prolog programs while maintaining the semantics of the language. However, when builtin side-effects (such as write or assert) appear in the program, if an identical observable behaviour to that of sequential Prolog implementations is to be preserved, such side-effects have to be properly sequenced. Previously proposed solutions to this problem are either incomplete (lacking, for example, backtracking semantics) or they force sequentialization of significant portions of the execution graph which could otherwise run in parallel. In this paper a series of side-effect synchronization methods are proposed which incur lower overhead and allow more parallelism than those previously proposed. Most importantly, and unlike previous proposals, they have well-defined backward execution behaviour and require only a small modification to a given (And-parallel) Prolog implementation.
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A backtracking algorithm for AND-Parallelism and its implementation at the Abstract Machine level are presented: first, a class of AND-Parallelism models based on goal independence is defined, and a generalized version of Restricted AND-Parallelism (RAP) introduced as characteristic of this class. A simple and efficient backtracking algorithm for R A P is then discussed. An implementation scheme is presented for this algorithm which offers minimum overhead, while retaining the performance and storage economy of sequent ial implementations and taking advantage of goal independence to avoid unnecessary backtracking ("restricted intelligent backtracking"). Finally, the implementation of backtracking in sequential and AND-Parallcl systems is explained through a number of examples.
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This paper presents some brief considerations on the role of Computational Logic in the construction of Artificial Intelligence systems and in programming in general. It does not address how the many problems in AI can be solved but, rather more modestly, tries to point out some advantages of Computational Logic as a tool for the AI scientist in his quest. It addresses the interaction between declarative and procedural views of programs (deduction and action), the impact of the intrinsic limitations of logic, the relationship with other apparently competing computational paradigms, and finally discusses implementation-related issues, such as the efficiency of current implementations and their capability for efficiently exploiting existing and future sequential and parallel hardware. The purpose of the discussion is in no way to present Computational Logic as the unique overall vehicle for the development of intelligent systems (in the firm belief that such a panacea is yet to be found) but rather to stress its strengths in providing reasonable solutions to several aspects of the task.
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An abstract is not available.
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Dentro de los paradigmas de programación en el mundo de la informática tenemos la "Programación Lógica'', cuyo principal exponente es el lenguaje Prolog. Los programas Prolog se componen de un conjunto de predicados, cada uno de ellos definido en base a reglas que aportan un elevado nivel de abstracción y declaratividad al programador. Sin embargo, las formulación con reglas implica, frecuentemente, que un predicado se recompute varias veces para la misma consulta y además, Prolog utiliza un orden fijo para evaluar reglas y objetivos (evaluación SLD) que puede entrar en "bucles infinitos'' cuando ejecuta reglas recursivas declarativamente correctas. Estas limitaciones son atacadas de raiz por la tabulación, que se basa en "recordar'' en una tabla las llamadas realizadas y sus soluciones. Así, en caso de repetir una llamada tendríamos ya disponibles sus soluciones y evitamos la recomputación. También evita "bucles infinitos'' ya que las llamadas que los generan son suspendidas, quedando a la espera de que se computen soluciones para las mismas. La implementación de la tabulación no es sencilla. En particular, necesita de tres operaciones que no pueden ser ejecutadas en tiempo constante simultáneamente. Dichas operaciones son: suspensión de llamadas, relanzamiento de llamadas y {acceso a variables. La primera parte de la tesis compara tres implementaciones de tabulación sobre Ciao, cada una de las cuales penaliza una de estas operaciones. Por tanto, cada solución tiene sus ventajas y sus inconvenientes y se comportan mejor o peor dependiendo del programa ejecutado. La segunda parte de la tesis mejora la funcionalidad de la tabulación para combinarla con restricciones y también para evitar computaciones innecesarias. La programación con restricciones permite la resolución de ecuaciones como medio de programar, mecanismo altamente declarativo. Hemos desarrollado un framework para combinar la tabulación con las restricciones, priorizando objetivos como la flexibilidad, la eficiencia y la generalidad de nuestra solución, obteniendo una sinergia entre ambas técnicas que puede ser aplicada en numerosas aplicaciones. Por otra parte, un aspecto fundamental de la tabulación hace referencia al momento en que se retornan las soluciones de una llamada tabulada. Local evaluation devuelve soluciones cuando todas las soluciones de la llamada tabulada han sido computadas. Por contra, batched evaluation devuelve las soluciones una a una conforme van siendo computadas, por lo que se adapta mejor a problemas donde no nos interesa encontrar todas las soluciones. Sin embargo, su consumo de memoria es exponencialmente peor que el de local evaluation. La tesis presenta swapping evaluation, que devuelve soluciones tan pronto como son computadas pero con un consumo de memoria similar a la de local evaluation. Además, se implementan operadores de poda, once/1, para descartar la búsqueda de soluciones alternativas cuando encontramos la solución deseada. Por último, Prolog adopta con relativa facilidad soluciones para paralelismo gracias a su flexibilidad en el control de la ejecución y a que sus asignaciones son lógicas. La tercera parte de la tesis extiende el paralelismo conjuntivo de Ciao para trabajar con programas no deterministas, lo que presenta dos problemas principales: los objetivos atrapados y la recomputación de objetivos. Las soluciones clásicas para los objetivos atrapados rompían muchos invariantes de la ejecución Prolog, siendo soluciones difíciles de mantener y de extender, que la experiencia nos dice que han caído en desuso. Nosotros proponemos una solución modular (basada en la implementación de swapping evaluation), localizada y que no rompe los invariantes de la ejecución Prolog, pero que mantiene un alto rendimiento de la ejecución paralela. En referencia a la recomputación de objetivos paralelos en presencia de no determinismo hemos adaptado ténicas derivadas de la tabulación para memorizar computaciones de estos objetivos y evitar su recomputación.
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Abstract is not available.
Resumo:
We present new algorithms which perform automatic parallelization via source-to-source transformations. The objective is to exploit goal-level, unrestricted independent andparallelism. The proposed algorithms use as targets new parallel execution primitives which are simpler and more flexible than the well-known &/2 parallel operator, which makes it possible to generate better parallel expressions by exposing more potential parallelism among the literals of a clause than is possible with &/2. The main differences between the algorithms stem from whether the order of the solutions obtained is preserved or not, and on the use of determinacy information. We briefly describe the environment where the algorithms have been implemented and the runtime platform in which the parallelized programs are executed. We also report on an evaluation of an implementation of our approach. We compare the performance obtained to that of previous annotation algorithms and show that relevant improvements can be obtained.
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In this paper, we examine the issue of memory management in the parallel execution of logic programs. We concentrate on non-deterministic and-parallel schemes which we believe present a relatively general set of problems to be solved, including most of those encountered in the memory management of or-parallel systems. We present a distributed stack memory management model which allows flexible scheduling of goals. Previously proposed models (based on the "Marker model") are lacking in that they impose restrictions on the selection of goals to be executed or they may require consume a large amount of virtual memory. This paper first presents results which imply that the above mentioned shortcomings can have significant performance impacts. An extension of the Marker Model is then proposed which allows flexible scheduling of goals while keeping (virtual) memory consumption down. Measurements are presented which show the advantage of this solution. Methods for handling forward and backward execution, cut and roll back are discussed in the context of the proposed scheme. In addition, the paper shows how the same mechanism for flexible scheduling can be applied to allow the efficient handling of the very general form of suspension that can occur in systems which combine several types of and-parallelism and more sophisticated methods of executing logic programs. We believe that the results are applicable to many and- and or-parallel systems.
Resumo:
A phylogenic analysis of Fusarium proliferatum and closely related species was performed using the most variable part within the intergenic spacer of the nuclear ribosomal DNA (IGS) and compared with a previously reported phylogeny performed in the same group of samples with a partial region of the nuclear single copy gene encoding the elongation factor 1α (EF-1α). The phylogenies from both genomic sequences were not concordant and revealed the presence of two nonorthologous IGS types, named types I and II, in F. proliferatum and Fusarium globosum. Two specific PCR assays designed to amplify either IGS type I or type II revealed that only one IGS type was present in each individual in these two species. The presence of both IGS types at the species level indicates that homogenization has not been achieved yet. This might be retarded if panmictic sexual reproduction was affected by certain levels of clonal reproduction and/or by the diverse hosts that these species are able to colonize. This study indicates that taxonomic studies carried out with the IGS rDNA, which has been widely used in Fusarium, should be undertaken with caution.
Resumo:
El punto de vista de muchas otras aplicaciones que modifican las reglas de computación. En segundo lugar, y una vez generalizado el concepto de independencia, es necesario realizar un estudio exhaustivo de la efectividad de las herramientas de análisis en la tarea de la paralelizacion automática. Los resultados obtenidos de dicha evaluación permiten asegurar de forma empírica que la utilización de analizadores globales en la tarea de la paralelizacion automática es vital para la consecución de una paralelizarían efectiva. Por último, a la luz de los buenos resultados obtenidos sobre la efectividad de los analizadores de flujo globales basados en la interpretación abstracta, se presenta la generalización de las herramientas de análisis al contexto de los lenguajes lógicos restricciones y planificación dinámica.