Unexpected prevalence of parasite 18S rDNA sequences in winter among Antarctic marine protists

Parasites are not typically considered to be important components of polar marine ecosystems. It was therefore surprising when 18S rDNA surveys of protists in the West Antarctic Peninsula in winter revealed high abundances of parasite sequences. Parasite sequences made up, on average, over half (52%) of sequence reads in samples from deep water in winter. Winter surface water and sediment samples contained relatively fewer, but still strikingly high, parasite sequence reads (13 and 9%, respectively), while surface water samples in summer contained fewer parasite sequences (1.8%). A total of 1028 distinct parasite Operational Taxonomic Units were observed in winter, with the largest abundances and diversities within Syndiniales groups I and II, including Amoebophrya. Less abundant parasite sequence groups included Apicomplexa, Blastodinium, Chytriodinium, Cryptocaryon, Paradinium, Perkinsidae, Pirsonia and Ichthyophonae. Parasite sequence distributions suggested interactions with known hosts, such as diatom parasites which were mainly in the sediments, where resting spores of Chaetoceros spp. diatoms were abundant. Syndiniales sequences were correlated with radiolarian sequences, suggesting parasite–host interactions. The abundant proportions of parasite sequences indicate a potentially important role for parasites in the Antarctic marine ecosystem, with implications for plankton population dynamics, the role of the microbial loop, carbon flows and ecosystem responses to ongoing anthropogenic climate change.

On precise three-dimensional environment modeling via UAV-based photogrammetric systems

Abstract : Images acquired from unmanned aerial vehicles (UAVs) can provide data with unprecedented spatial and temporal resolution for three-dimensional (3D) modeling. Solutions developed for this purpose are mainly operating based on photogrammetry concepts, namely UAV-Photogrammetry Systems (UAV-PS). Such systems are used in applications where both geospatial and visual information of the environment is required. These applications include, but are not limited to, natural resource management such as precision agriculture, military and police-related services such as traffic-law enforcement, precision engineering such as infrastructure inspection, and health services such as epidemic emergency management. UAV-photogrammetry systems can be differentiated based on their spatial characteristics in terms of accuracy and resolution. That is some applications, such as precision engineering, require high-resolution and high-accuracy information of the environment (e.g. 3D modeling with less than one centimeter accuracy and resolution). In other applications, lower levels of accuracy might be sufficient, (e.g. wildlife management needing few decimeters of resolution). However, even in those applications, the specific characteristics of UAV-PSs should be well considered in the steps of both system development and application in order to yield satisfying results. In this regard, this thesis presents a comprehensive review of the applications of unmanned aerial imagery, where the objective was to determine the challenges that remote-sensing applications of UAV systems currently face. This review also allowed recognizing the specific characteristics and requirements of UAV-PSs, which are mostly ignored or not thoroughly assessed in recent studies. Accordingly, the focus of the first part of this thesis is on exploring the methodological and experimental aspects of implementing a UAV-PS. The developed system was extensively evaluated for precise modeling of an open-pit gravel mine and performing volumetric-change measurements. This application was selected for two main reasons. Firstly, this case study provided a challenging environment for 3D modeling, in terms of scale changes, terrain relief variations as well as structure and texture diversities. Secondly, open-pit-mine monitoring demands high levels of accuracy, which justifies our efforts to improve the developed UAV-PS to its maximum capacities. The hardware of the system consisted of an electric-powered helicopter, a high-resolution digital camera, and an inertial navigation system. The software of the system included the in-house programs specifically designed for camera calibration, platform calibration, system integration, onboard data acquisition, flight planning and ground control point (GCP) detection. The detailed features of the system are discussed in the thesis, and solutions are proposed in order to enhance the system and its photogrammetric outputs. The accuracy of the results was evaluated under various mapping conditions, including direct georeferencing and indirect georeferencing with different numbers, distributions and types of ground control points. Additionally, the effects of imaging configuration and network stability on modeling accuracy were assessed. The second part of this thesis concentrates on improving the techniques of sparse and dense reconstruction. The proposed solutions are alternatives to traditional aerial photogrammetry techniques, properly adapted to specific characteristics of unmanned, low-altitude imagery. Firstly, a method was developed for robust sparse matching and epipolar-geometry estimation. The main achievement of this method was its capacity to handle a very high percentage of outliers (errors among corresponding points) with remarkable computational efficiency (compared to the state-of-the-art techniques). Secondly, a block bundle adjustment (BBA) strategy was proposed based on the integration of intrinsic camera calibration parameters as pseudo-observations to Gauss-Helmert model. The principal advantage of this strategy was controlling the adverse effect of unstable imaging networks and noisy image observations on the accuracy of self-calibration. The sparse implementation of this strategy was also performed, which allowed its application to data sets containing a lot of tie points. Finally, the concepts of intrinsic curves were revisited for dense stereo matching. The proposed technique could achieve a high level of accuracy and efficiency by searching only through a small fraction of the whole disparity search space as well as internally handling occlusions and matching ambiguities. These photogrammetric solutions were extensively tested using synthetic data, close-range images and the images acquired from the gravel-pit mine. Achieving absolute 3D mapping accuracy of 11±7 mm illustrated the success of this system for high-precision modeling of the environment.

Das representações sociais à educação intercultural: identidade/alteridade de alunos autóctones e estrangeiros numa escola multicultural

Os fenómenos migratórios têm contribuído para a configuração de uma realidade sociocultural diversa que marca as sociedades do século XXI. Portugal não é exceção, sendo um dos países onde mais aumentou proporcionalmente a imigração legal permanente, fenómeno coexistente com a emigração da sua população. Neste contexto de migrações reconfiguram-se identidades, não apenas para os migrantes mas também para os autóctones, cuja (re)construção balança entre a semelhança e a diferença. Sem esta relação, a identidade fica comprometida, pois ela existe fundamentalmente pelo reconhecimento dos outros. A liberdade cultural e linguística é também uma dimensão do desenvolvimento humano, pelo que tem vindo a ganhar proeminência a promoção da diversidade linguística e cultural, e a consequente educação intercultural, que se assume como espaço privilegiado de reflexão e ação. Defende-se que a verdadeira integração dos imigrantes terá de ser multilingue e não pode ser realizada apagando as suas diferenças, nem obrigando-os a abandonar as suas línguas nativas e culturas. O domínio da Língua Portuguesa é uma das vias mais poderosas para a integração dos estrangeiros a residir em Portugal, tanto como garantia da autonomia individual que faculta o exercício de uma cidadania ativa, como de harmonia social ao nível coletivo. A escola portuguesa, atenta a este facto, vê reconhecida, por parte do Ministério da Educação, a Língua Portuguesa como fator de integração. Todavia, esse reconhecimento contrasta com a indiferença perante as línguas maternas dos alunos estrangeiros, ignorando-se, assim, um importante elemento das suas pertenças identitárias. Neste âmbito, alguns autores afirmam que a escola portuguesa nem sempre tem praticado uma verdadeira educação intercultural, adotando, pelo contrário, parte das características hegemónicas da cultura dominante, o que se traduz, por conseguinte, no esmagamento simbólico (coletivo) das culturas minoritárias. O nosso estudo usa as Representações Sociais como formas de conhecimento prático que permitem a compreensão do mundo e a comunicação, proporcionando coerência às dinâmicas sociais. Procurámos fazer, através delas, uma leitura da valorização da diversidade linguística e cultural na escola, uma vez que as Representações Sociais que se têm do Outro justificam a forma como se interage com ele e imprimem direção às relações intra e intergrupais. A investigação que aqui apresentamos procura dar primazia à “voz” do aluno como fonte de conhecimento, aos fenómenos, a partir das experiências interindividuais e intergrupais, e à forma como as pessoas experienciam e interpretam o mundo social que constroem interativamente. Para esse efeito, recolhemos dados através de entrevistas semidiretivas individuais junto de dez alunos autóctones e dez alunosestrangeiros de uma mesma escola. Complementarmente, realizámos entrevistas aos Encarregados de Educação de oito dos alunos entrevistados, quatro de cada grupo, aos cinco Diretores de Turma desses alunos e ao Diretor da escola. Do ponto de vista metodológico, a presente investigação desenvolveu-se de acordo com uma abordagem de natureza qualitativa, relacionada com um paradigma fenomenológico-interpretativo – os fenómenos humanos e educativos apresentam-se, na sua complexidade, intimamente relacionados e a sua compreensão exige a reconciliação entre a epistemologia e o compromisso ético. Procurando uma leitura global dos resultados obtidos, e à semelhança de alguns estudos, a nossa investigação demonstra que, ao não se promover proativamente uma educação intercultural – designadamente a sua função de crítica cultural e o combate a estereótipos e preconceitos que essencializam as diferenças do Outro culturalmente diverso –, a escola não prepara os alunos para a sociedade contemporânea, culturalmente diversa, dinâmica e com um elevado nível de incerteza, nem para uma abordagem positiva e frontal dos conflitos em toda a sua complexidade. À escola impõem-se ainda muitos desafios relativos às muitas diversidades que acolhe no seu seio, de forma a que todos aqueles que constituem a comunidade escolar – designadamente os alunos, sejam eles estrangeiros ou autóctones – se sintam parte integrante dela, respeitados tanto pelas suas raízes, como pelas múltiplas pertenças dinamicamente em (re)construção, como, ainda, pelos seus projetos de futuro. A informação, por si só, não promove a ação. Revela-se necessária a adoção de estratégias de intervenção que concretizem a informação nas práticas escolares quotidianas, que promovam encontros positivamente significativos, que favoreçam a igualdade social e o reconhecimento das diferenças e, ainda, que previnam atitudes discriminatórias. Para essas estratégias de intervenção serem uma constante no quotidiano das nossas escolas, a didática intercultural deve ser incentivada e operacionalizada, tanto na prática pedagógica como na formação inicial e contínua dos professores.

Diversity of decapod crustaceans at the interface of unconsolidated seabed areas and rocky shores in tropical/subtropical Brazil

The decapod crustacean assemblages from unconsolidated seabed areas located near rocky shores in the Ubatuba region on the south-east coast of Brazil were analysed by investigating the abundance, richness, diversity and dominance of species. The relationships of the sediment and bottom-water temperature to total species abundance, richness and diversity were also evaluated. Monthly samples were taken from January 1998 through December 1999 at sites in Ubatumirim and Mar Virado. At each locality, three areas were defined as either 'exposed', 'sheltered' or 'island'. The highest species abundance was found in the sheltered area of Ubatumirim and the exposed area of Mar Virado, and during autumn. At Ubatumirim, the highest richness occurred in the exposed area and the highest diversity near the island. At Mar Virado, the highest richness and diversity were found near the island. Autumn and winter collections yielded the highest richness but the lowest diversity. The higher diversities, which were measured near the islands and during spring and summer, were consequences of the greater evenness of the data. The areas with the highest diversity also had the most heterogeneous sediment composition, thus reinforcing the hypothesis that areas with more complex substrata support more diverse faunas.

Ontologia do espaço : critica da critica da entificação social do ser enquanto pressuposto a uma teoria espacial interpenetrada a “ontologia do ser social”, de Gyorgy Lukacs

Tese (doutorado)—Universidade de Brasília, Instituto de Ciências Humanas, Departamento de Geografia, Programa de Pós Graduação em Geografia, 2015.

Phylogeography of the Atlanto-Mediterranean sea cucumber Holothuria (Holothuria) mammata: the combined effects of historical processes and current oceanographical pattern

We assessed the genetic structure of populations of the widely distributed sea cucumber Holothuria (Holothuria) mammata Grube, 1840, and investigated the effects of marine barriers to gene flow and historical processes. Several potential genetic breaks were considered, which would separate the Atlantic and Mediterranean basins, the isolated Macaronesian Islands from the other locations analysed, and the Western Mediterranean and Aegean Sea (Eastern Mediterranean). We analysed mitochondrial 16S and COI gene sequences from 177 individuals from four Atlantic locations and four Mediterranean locations. Haplotype diversity was high (H = 0.9307 for 16S and 0.9203 for COI), and the haplotypes were closely related (p = 0.0058 for 16S and 0.0071 for COI). The lowest genetic diversities were found in the Aegean Sea population. Our results showed that the COI gene was more variable and more useful for the detection of population structure than the 16S gene. The distribution of mtDNA haplotypes, the pairwise FST values and the results of exact tests and AMOVA revealed: (i) a significant genetic break between the population in the Aegean Sea and those in the other locations, as supported by both mitochondrial genes, and (ii) weak differentiation of the Canary and Azores Islands from the other populations; however, the populations from the Macaronesian Islands, Algarve and West Mediterranean could be considered to be a panmictic metapopulation. Isolation by distance was not identified in H. (H.) mammata. Historical events behind the observed findings, together with the current oceanographic patterns, were proposed and discussed as the main factors that determine the population structure and genetic signature of H. (H.) mammata

Mitochondrial demographic history of the Egyptian mongoose (Herpestes ichneumon), an expanding carnivore in the Iberian Peninsula

Describing the genetic patterns and the demographic history of expanding species is essential for providing insights into the processes linked with range dynamics. We analysed the mitochondrial diversity of the Egyptian mongoose (Herpestes ichneumon) across the Iberian Peninsula, where the species is currently expanding northwest. A total of 242 individuals were analysed, together with nine representatives from the North African dispersal source. Haplotype segregation and strong differentiation between Iberian and North African populations confirmed the longterm presence of the species in the Iberian Peninsula. The distribution of mitochondrial diversity fitted the pattern of a historically diversified population in southern Iberia, from which the recent dispersals into northern areas may have occurred. Higher levels of haplotype and nucleotide diversities in the northern areas, together with the heterogeneous distribution of pairwise population differentiations and the weak signal for isolationbydistance suggest the existence of longdispersal migrants across the Iberian Peninsula. Sudden and spatial expansion scenarios of H. ichneumon in the Iberian Peninsula were supported by mismatch analysis and marginally supported by neutrality tests. However, the precise time of occurrence of the detected expansion remains unclear. Future studies should incorporate additional markers in order to further clarify the population dynamics of the Egyptian mongoose in its Iberian range.