Turbulence as a driver for vertical plankton distribution in the subsurface upper ocean

[EN] Vertical distributions of turbulent energy dissipation rates and fluorescence were measured simultaneously with a high-resolution micro-profiler in four different oceanographic regions, from temperate to polar and from coastal to open waters settings. High fluorescence values, forming a deep chlorophyll maximum (DCM), were often located in weakly stratified portions of the upper water column, just below layers with maximum levels of turbulent energy dissipation rate. In the vicinity of the DCM, a significant negative relationship between fluorescence and turbulent energy dissipation rate was found. We discuss the mechanisms that may explain the observed patterns of planktonic biomass distribution within the ocean mixed layer, including a vertically variable diffusion coefficient and the alteration of the cells sinking velocity by turbulent motion. These findings provide further insight into the processes controlling the vertical distribution of the pelagic community and position of the DCM.

USB monitor in LabVIEW per il controllo remoto delle schede DAQ del pixel detector di ATLAS

L’esperimento ATLAS al CERN di Ginevra ha un complesso sistema di rivelatori che permettono l’acquisizione e il salvataggio di dati generati dalle collisioni di particelle fondamentali. Il rivelatore per cui trova una naturale applicazione il lavoro di questa tesi è il Pixel Detector. Esso è il più vicino alla beam pipe e si compone di più strati, il più interno dei quali, l’Insertable B-Layer (IBL), aggiunto in seguito allo shut down dell’LHC avvenuto nel 2013, ha apportato diverse innovazioni per migliorare la risoluzione spaziale delle tracce e la velocità di acquisizione dei dati. E’ stato infatti necessario modificare il sistema di acquisizione dati dell’esperimento aggiungendo nuove schede chiamate ROD, ReadOut Driver, e BOC, Back Of Crate. Entrambe le due tipologie di schede sono montate su un apparato di supporto, chiamato Crate, che le gestisce. E’ evidente che avere un sistema remoto che possa mostrare in ogni momento il regime di funzionamento del crate e che dia la possibilità di pilotarlo anche a distanza risulta estremamente utile. Così, tramite il linguaggio di programmazione LabVIEW è stato possibile progettare un sistema multipiattaforma che permette di comunicare con il crate in modo da impostare e ricevere svariati parametri di controllo del sistema di acquisizione dati, come ad esempio la temperatura, la velocità delle ventole di raffreddamento e le correnti assorbite dalle varie tensioni di alimentazione. Al momento il software viene utilizzato all’interno dell’Istituto Nazionale di Fisica Nucleare (INFN) di Bologna dove è montato un crate W-Ie-Ne-R, speculare a quello presente al CERN di Ginevra, contenente delle schede ROD e BOC in fase di test. Il progetto ed il programma sviluppato e presentato in questa tesi ha ulteriori possibilità di miglioramento e di utilizzo, dal momento che anche per altri esperimenti dell’LHC le schede di acquisizione vengono montate sullo stesso modello di crate.

Algoritmi di ottimizzazione per il bus touring problem.

Nel campo della Ricerca Operativa e dei problemi di ottimizzazione viene presentato un problema, denominato Bus Touring Problem (BTP), che modella una problematica riguardante il carico e l’instradamento di veicoli nella presenza di di vincoli temporali e topologici sui percorsi. Nel BTP, ci si pone il problema di stabilire una serie di rotte per la visita di punti di interesse dislocati geograficamente da parte di un insieme di comitive turistiche, ciascuna delle quali stabilisce preferenze riguardo le visite. Per gli spostamenti sono disponibili un numero limitato di mezzi di trasporto, in generale eterogenei, e di capacitá limitata. Le visite devono essere effettuate rispettando finestre temporali che indicano i periodi di apertura dei punti di interesse; per questi, inoltre, é specificato un numero massimo di visite ammesse. L’obiettivo é di organizzare il carico dei mezzi di trasporto e le rotte intraprese in modo da massimizzare la soddisfazione complessiva dei gruppi di turisti nel rispetto dei vincoli imposti. Viene presentato un algoritmo euristico basato su Tabu Search appositamente ideato e progettato per la risoluzione del BTP. Vengono presentati gli esperimenti effettuati riguardo la messa appunto dei parametri dell'algoritmo su un insieme di problemi di benchmark. Vengono presentati risultati estesi riguardo le soluzioni dei problemi. Infine, vengono presentate considerazioni ed indicazioni di sviluppo futuro in materia.

SNP array profiling of childhood adrenocortical tumors reveals distinct pathways of tumorigenesis and highlights candidate driver genes

Childhood adrenocortical tumors (ACT) are rare malignancies, except in southern Brazil, where a higher incidence rate is associated to a high frequency of the founder R337H TP53 mutation. To date, copy number alterations in these tumors have only been analyzed by low-resolution comparative genomic hybridization.

Cyclin D1 in non-small cell lung cancer: a key driver of malignant transformation

PURPOSE: To review the evidence implicating the deregulation of cyclin D1 in the pathogenesis of non-small cell lung cancer (NSCLC), and to discuss the opportunities for targeted clinical intervention. METHODS: Data published until June 2006 are summarized, and previously unpublished results from our own research are included. RESULTS: In normal cells, cyclin D1 complexes with and activates cyclin-dependent kinases (CDK) and acts as a transcriptional regulator. The protein is frequently overexpressed in a wide range of cancers, sometimes coincident with CCND1 (cyclin D1) gene amplification (5-20% of tumours). A low level of somatic mutations have been seen in certain tumours. CCND1 is amplified in NSCLC and cyclin D1 is frequently overexpressed in tumours and pre-invasive bronchial lesions, generally from one parental allele. Mutation analyses revealed a frequent CCND1 gene polymorphism (A870G) that modulates alternative splicing and allows expression of an alternative cyclin D1 transcript (transcript cyclin D1b). The encoded cyclin D1b protein lacks a specific phosphorylation site required for nuclear export. Genotype has been correlated with the risk and/or severity of disease or drug response across a range of malignancies, including lung cancer. Together, these findings suggest a strong pathological role for cyclin D1 deregulation in bronchial neoplasia. CONCLUSION: Current data indicate that cyclin D1 overexpression is not a consequence of, but rather a pivotal element in the process of malignant transformation in the lung and other tissues. This understanding may open new avenues for lung cancer diagnosis, treatment and prevention.

Driver Safety in Far-side and Far-oblique Crashes: A Study of Patrol Vehicles in the United States of America

The dissertation titled "Driver Safety in Far-side and Far-oblique Crashes" presents a novel approach to assessing vehicle cockpit safety by integrating Human Factors and Applied Mechanics. The methodology of this approach is aimed at improving safety in compact mobile workspaces such as patrol vehicle cockpits. A statistical analysis performed using Michigan state's traffic crash data to assess various contributing factors that affect the risk of severe driver injuries showed that the risk was greater for unrestrained drivers (OR=3.38, p<0.0001) and for incidents involving front and far-side crashes without seatbelts (OR=8.0 and 23.0 respectively, p<0.005). Statistics also showed that near-side and far-side crashes pose similar threat to driver injury severity. A Human Factor survey was conducted to assess various Human-Machine/Human-Computer Interaction aspects in patrol vehicle cockpits. Results showed that tasks requiring manual operation, especially the usage of laptop, would require more attention and potentially cause more distraction. A vehicle survey conducted to evaluate ergonomics-related issues revealed that some of the equipment was in airbag deployment zones. In addition, experiments were conducted to assess the effects on driver distraction caused by changing the position of in-car accessories. A driving simulator study was conducted to mimic HMI/HCI in a patrol vehicle cockpit (20 subjects, average driving experience = 5.35 years, s.d. = 1.8). It was found that the mounting locations of manual tasks did not result in a significant change in response times. Visual displays resulted in response times less than 1.5sec. It can also be concluded that the manual task was equally distracting regardless of mounting positions (average response time was 15 secs). Average speeds and lane deviations did not show any significant results. Data from 13 full-scale sled tests conducted to simulate far-side impacts at 70 PDOF and 40 PDOF was used to analyze head injuries and HIC/AIS values. It was found that accelerations generated by the vehicle deceleration alone were high enough to cause AIS 3 - AIS 6 injuries. Pretensioners could mitigated injuries only in 40 PDOF (oblique) impacts but are useless in 70 PDOF impacts. Seat belts were ineffective in protecting the driver's head from injuries. Head would come in contact with the laptop during a far-oblique (40 PDOF) crash and far-side door for an angle-type crash (70 PDOF). Finite Element analysis head-laptop impact interaction showed that the contact velocity was the most crucial factor in causing a severe (and potentially fatal) head injury. Results indicate that no equipment may be mounted in driver trajectory envelopes. A very narrow band of space is left in patrol vehicles for installation of manual-task equipment to be both safe and ergonomic. In case of a contact, the material stiffness and damping properties play a very significant role in determining the injury outcome. Future work may be done on improving the interiors' material properties to better absorb and dissipate kinetic energy of the head. The design of seat belts and pretensioners may also be seen as an essential aspect to be further improved.

Little evidence for release from herbivores as a driver of plant invasiveness from a multi-species herbivore-removal experiment

Enemy release is frequently posed as a main driver of invasiveness of alien species. However, an experimental multi-species test examining performance and herbivory of invasive alien, non-invasive alien and native plant species in the presence and absence of natural enemies is lacking. In a common garden experiment in Switzerland, we manipulated exposure of seven alien invasive, eight alien non-invasive and fourteen native species from six taxonomic groups to natural enemies (invertebrate herbivores), by applying a pesticide treatment under two different nutrient levels. We assessed biomass production, herbivore damage and the major herbivore taxa on plants. Across all species, plants gained significantly greater biomass under pesticide treatment. However, invasive, non-invasive and native species did not differ in their biomass response to pesticide treatment at either nutrient level. The proportion of leaves damaged on invasive species was significantly lower compared to native species, but not when compared to non-invasive species. However, the difference was lost when plant size was accounted for. There were no differences between invasive, non-invasive and native species in herbivore abundance. Our study offers little support for invertebrate herbivore release as a driver of plant invasiveness, but suggests that future enemy release studies should account for differences in plant size among species.