Influence of the sea state on Mediterranean heavy precipitation: a case-study from HyMeX SOP1

Sea state can influence the turbulent air–sea exchanges, especially the momentum flux, by modifying the sea-surface roughness. The high-resolution non-hydrostatic convection-permitting model MESO-NH is used here to investigate the impact of a more realistic representation of the waves on heavy precipitation during the Intense Observation Period (IOP) 16a of the first HyMeX Special Observation Period (SOP1). Several quasi-stationary mesoscale convective systems developed over the western Mediterranean region, two of them over the sea, and resulted in heavy precipitation on the French and Italian coasts on 26 October 2012. Three different bulk parametrizations are tested in this study: a reference case (NOWAV) without any wave effect, a parametrization taking into account theoretical wave effects (WAV) and a last one with realistic wave characteristics from the MFWAM analyses (WAM). Using a realistic wave representation in WAM significantly increases the roughness length and the friction velocity with respect to NOWAV and WAV. The three MESO-NH sensitivity experiments of the IOP16a show that this surface-roughness increase in WAM generates higher momentum fluxes and directly impacts the low-level dynamics of the atmosphere, with a slowdown of the 10 m wind, when and where the wind speed exceeds 10 m s−1 and the sea state differs from the idealized one. The turbulent heat fluxes are not significantly influenced by the waves, these fluxes being controlled by the moisture content rather than by the wind speed in the simulations. Although the convective activity is globally well reproduced by all the simulations, the difference in the low-level dynamics of the atmosphere influences the localization of the simulated heavy precipitation. Objective evaluation of the daily rainfall amount and of the 10 m wind speed against the observations confirms the positive impact of the realistic wave representation on this simulation of heavy precipitation.

Radiogenic isotopes in the Mediterranean Sea: water mass exchange and precessional variability during the Messinian

During the late Miocene, exchange between the Mediterranean Sea and Atlantic Ocean changed dramatically, culminating in the Messinian Salinity Crisis (MSC). Understanding Mediterranean-Atlantic exchange at that time could answer the enigmatic question of how so much salt built up within the Mediterranean, while furthering the development of a framework for future studies attempting to understand how changes may have impacted global thermohaline circulation. Due to their association with specific water masses at different scales, radiogenic Sr, Pb, and Nd isotope records were generated from various archives contained within marine deposits to endeavour to understand better late Miocene Mediterranean-Atlantic exchange. The archives used include foraminiferal calcite (Sr), fish teeth and bone (Nd), dispersed authigenic ferromanganese oxyhydroxides (Nd, Pb), and a ferromanganese crust (Pb). The primary focus is on sediments preserved at one end of the Betic corridor, a gateway that once connected the Mediterranean to the Atlantic through southern Spain, although other locations are investigated. The Betic gateway terminated within several marginal sub-basins before entering the Western Mediterranean; one of these is the Sorbas Basin, a well-studied location whose sediments have been astronomically tuned at high temporal resolution, providing the necessary age control for sub-precessional resolution records. Since the climatic history of the Mediterranean is strongly controlled by precessional changes in regional climate, the aim was to produce records at high (sub-precessional) temporal resolution, to be able to observe clearly any precessional cyclicity driven by regional climate which could be superimposed over longer trends. This goal was achieved for all records except the ferromanganese crust record. The 87Sr/86Sr isotope record (Ch. 3) shows precessional frequency excursions away from the global seawater curve. As precessional frequency oscillations are unexpected for this setting, a numerical box model was used to determine the mechanisms causing the excursions. To enable parameterisation of model variables, regional Sr characteristics, data from general circulation model HadCM3L, and new benthic foraminiferal assemblage data are employed. The model results imply that the Sorbas Basin likely had a positive hydrologic budget in the late Miocene, very different to that of today. Moreover, the model indicates that the mechanism controlling the Sr isotope ratio of Sorbas Basin seawater was not restriction, but a lack of density-driven exchange with the Mediterranean. Beyond improving our understanding of how marginal Mediterranean sub-basins may evolve different isotope signatures, these results have implications for astronomical tuning and stratigraphy in the region, findings which are crucial considering the geological and climatic history of the late Miocene Mediterranean is based entirely on marginal deposits. An improved estimate for the Nd isotope signature of late Miocene Mediterranean Outflow (MO) was determined by comparing Nd isotope signatures preserved in the deeper Alborán Sea at ODP Site 978 with literature data as well as the signature preserved in the Sorbas Basin (Ch. 4; -9.34 to -9.92 ± 0.37 εNd(t)). It was also inferred that it is unlikely that Nd isotopes can be used reliably to track changes in circulation within the shallow settings characteristic of the Mediterranean-Atlantic connections; this is significant in light of a recent publication documenting corridor closure using Nd isotopes. Both conclusions will prove useful for future studies attempting to understand changes in Mediterranean-Atlantic exchange. Excursions to high values, with precessional frequency, are also observed in the radiogenic Pb isotope record for the Sorbas Basin (Ch. 5). Widening the scope to include locations further away from the gateways, records were produced for late Miocene sections on Sicily and Northern Italy, and similar precessional frequency cyclicity was observed in the Pb isotope records for these sites as well. Comparing these records to proxies for Saharan dust and available whole rock data indicates that, while further analysis is necessary to draw strong conclusions, enhanced dust production during insolation minima may be driving the observed signal. These records also have implications for astronomical tuning; peaks in Pb isotope records driven by Saharan dust may be easier to connect directly to the insolation cycle, providing improved astronomical tuning points. Finally, a Pb isotope record derived using in-situ laser ablation performed on ferromanganese crust 3514-6 from the Lion Seamount, located west of Gibraltar within the MO plume, has provided evidence that plume depth shifted during the Pliocene. The record also suggests that Pb isotopes may not be a suitable proxy for changes in late Miocene Mediterranean-Atlantic exchange, since the Pb isotope signatures of regional water masses are too similar. To develop this record, the first published instance of laser ablation derived 230Thexcess measurements are combined with 10Be dating.

Highly polymorphic microsatellite markers for the Mediterranean endemic fan mussel Pinna nobilis

Pinna nobilis is an endemic bivalve of the Mediterranean Sea whose populations have decreased in the last decades due to human pressure; as a consequence, it was declared a protected species in 1992. Despite its conservation status, few genetic studies using mitochondrial markers have been published. We report on the isolation and development of 10 microsatellite loci for the fan mussel, Pinna nobilis. All loci (2 di-nucleotide, 5 tri-nucleotide, 2 tetra-nucleotide and 1 penta-nucleotide) are characterized by high levels of polymorphism in 76 individuals tested from two populations in the Balearic Islands (Spain, Western Mediterranean Sea). The number of alleles ranged from 4 to 24 and expected heterozygosity ranged from 0.4269 to 0.9400. These microsatellites could be very useful for the assessment of the genetic diversity and connectivity patterns of P. nobilis and the establishment of new conservation strategies.

New insights into the genetic diversity of zooxanthellae in Mediterranean anthozoans

Symbiotic dinoflagellates of the genus Symbiodinium, also called zooxanthellae, are found in association with a wide diversity of shallow-water anthozoans. The Symbiodinium genus includes numerous lineages, also referred to as clades or phylotypes, as well as a wide diversity of genetic sub-clades and sub-phylotypes. There are few studies characterizing the genetic diversity of zooxanthellae in Mediterranean anthozoans. In this study, we included anthozoans from the Western Mediterranean Sea and by means of internal transcriber (ITS) and large sub-unit (LSU) rRNA markers we corroborate what has been previously identified, demonstrating that phylotype “Temperate A” is very common among host Cnidaria in this basin. Our finding of fixed differences in ITS and LSU markers that correspond to different host taxa, indicate that this clade may comprise several closely-related species.

Phylogeography of the Atlanto-Mediterranean sea cucumber Holothuria (Holothuria) mammata: the combined effects of historical processes and current oceanographical pattern

We assessed the genetic structure of populations of the widely distributed sea cucumber Holothuria (Holothuria) mammata Grube, 1840, and investigated the effects of marine barriers to gene flow and historical processes. Several potential genetic breaks were considered, which would separate the Atlantic and Mediterranean basins, the isolated Macaronesian Islands from the other locations analysed, and the Western Mediterranean and Aegean Sea (Eastern Mediterranean). We analysed mitochondrial 16S and COI gene sequences from 177 individuals from four Atlantic locations and four Mediterranean locations. Haplotype diversity was high (H = 0.9307 for 16S and 0.9203 for COI), and the haplotypes were closely related (p = 0.0058 for 16S and 0.0071 for COI). The lowest genetic diversities were found in the Aegean Sea population. Our results showed that the COI gene was more variable and more useful for the detection of population structure than the 16S gene. The distribution of mtDNA haplotypes, the pairwise FST values and the results of exact tests and AMOVA revealed: (i) a significant genetic break between the population in the Aegean Sea and those in the other locations, as supported by both mitochondrial genes, and (ii) weak differentiation of the Canary and Azores Islands from the other populations; however, the populations from the Macaronesian Islands, Algarve and West Mediterranean could be considered to be a panmictic metapopulation. Isolation by distance was not identified in H. (H.) mammata. Historical events behind the observed findings, together with the current oceanographic patterns, were proposed and discussed as the main factors that determine the population structure and genetic signature of H. (H.) mammata

Mediterranean outflow and its link with upstream conditions in Alboran Sea

The Western Alboran Gyre (WAG) at the eastern entrance of the Strait of Gibraltar can influence the Mediterranean outflow (MOW) by favoring or hampering the flow of Levantine and Western Mediterranean (LIW and WMDW) waters, the main constituents of the MOW. Observations collected at Camarinal sill in the Strait and AVISO data are used to investigate this issue.

Comparing Atlantic and Mediterranean populations of the velvet belly lanternshark, Etmopterus spinax, with comments on the efficiency of density-dependent compensatory mechanisms

Etmopterus spinax is a small-sized deep-water lantern shark that occurs in the Eastern Atlantic and the Mediterranean. Differences in depth distribution, densities, size at maturity and fecundity were compared between a population that has suffered high levels of fishing mortality during the last decades (Southern Portugal in the northeast Atlantic) and a population where low fishing pressure below 500 m occurs at present or has occurred in the last decades (Northern Alboran Sea in the western Mediterranean). The density of this species, as derived by experimental bottom trawl survey, off the coast of Southern Portugal, is substantially lower than in the Northern Alboran Sea throughout the entire depth range. The Atlantic population is maturing at smaller sizes than the Mediterranean population and has a lower mean fecundity. Specifically, sizes at maturity for Southern Portugal and the Northern Alboran Sea were, respectively, 25.39 and 28.31 cm TL for males and 30.86 and 34.18 cm TL for females, while mean fecundities for Southern Portugal and the Northern Alboran Sea were, respectively, 9.94 and 11.06 oocytes per mature female. This work demonstrated the possible presence of density-dependent mechanisms in the Southern Portuguese population of E. spinax that has lowered the size at maturity as a possible result of excessive fishing mortality. However, given that this is an aplacentary viviparous shark, where fecundity is dependent on female size, this compensatory mechanism seems to have a limited efficiency.

“Losanga” decorated imitations of italic late republican black gloss tableware from South-Western Iberia: A multi-analytical/microchemical characterization

The micro-chemical/mineralogical composition of samples of grey-paste imitations of Italic Late Republican black gloss tableware displaying a particular kind of lozenge-shaped decoration (“Losanga pottery”) from Portuguese and Spanish archaeological sites in SW Iberia has been analysed by BSEM + EDS, μXRD, Powder XRD, Portable XRF and μRaman spectroscopy. “Losanga” decorated ceramics have been found throughout the Western Mediterranean. Most of the sherds display a green-brown to greyish-black engobe at the surface resembling the gloss found in Attic pottery from Classical Greece. The overall chemical, mineralogical and fossiliferous homogeneities of the ceramic paste show common features (low K-feldspar/plagioclase ratio, high Ca content, abundance of well-preserved fragments of foraminifera microfossils) that indicate low firing conditions in the kiln ranging from 650 to 900 °C. With respect to the ceramic body, analytical results confirm an enrichment in the surface gloss layer of iron, potassium and aluminium and a depletion in silicon and calcium; the very fine grain size of the surface coating suggests elutriation of iron oxide-rich clays as confirmed by the presence of magnetite, maghemite and goethite in μ-XRD scan. Chemical and mineralogical data also suggest that the firing process was performed in a 600–850 °C temperature range, adopting the well-known technique of alternating oxidizing and reducing firing conditions largely employed at the time. The analytical results, while compatible with the archaeological hypothesis of a common provenance of the raw materials for pottery production from the Guadalquivir valley workshops cannot be considered conclusive due to the similarity in the geological substrate in the two SW Iberian regions under study.

Moving toward stock units identification based on spatial population structure of marine species in the Mediterranean Sea and adjacent waters through multidisciplinary and holistic approaches for the sustainability of fisheries resources

Investigating stock identity of marine species in a multidisciplinary holistic approach can reveal patterns of complex spatial population structure and signatures of potential local adaptation. The population structure of common sole (Solea solea) in the Mediterranean Sea was delineated using genomic and otolith data, including single nucleotide polymorphisms (SNPs) markers and otolith data. SNPs were correlated with environmental and spatial variables to evaluate the impact of these features on the actual genetic population structure. Integrated holistic approach was applied to combine the tracers with different spatio-temporal scales. SNPs data was also used to illustrate the population structure of European hake (Merluccius merluccius) within the Alboran Sea, extending into the neighboring Mediterranean Sea and Atlantic Ocean. The aim was to identify patterns of neutral and potential adaptive genetic variation by applying seascape genomic framework. Results from both genetic and otolith data suggested significant divergence among putative populations of common sole, confirming a clear separation between Western, Adriatic Sea and Eastern Mediterranean Sea. Evidence of fine-scale population structure in the Western Mediterranean Sea was observed at outlier loci level and in the Adriatic. Our study not only indicates that separation among Mediterranean sole population is led primarily by neutral processes, but it also suggests the presence of local adaptation influenced by environmental and spatial factors. The holistic approach by considering the spatio-temporal scales of variation confirmed that the same pattern of separation between these geographical sites is currently occurring and has occurred for many generations. Results showed the occurrence of population structure in Merluccius merluccius by detecting westward–eastward differentiation among populations and distinct subgroups at a fine geographical scale using outlier SNPs. These results enhance the knowledge of the population structure of commercially relevant species to support the application of spatial stock assessment models, including a redefinition of fishery management units.

The routes of the Mediterranean Sea circulation

The Mediterranean Sea is a semi-enclosed basin connected to the Atlantic Ocean through the narrow and shallow Strait of Gibraltar and further subdivided in two different sub-basins, the Eastern Mediterranean and the Western Mediterranean, connected through the Stait of Sicily. On annual basis, a net heat budget of −7 W/m2, combined with exceeding evaporation over precipation and runoff together with wind stress, is responsible for the antiestuarine character of the zonal thermoaline circulation. The outflow at Gibraltar Strait is mainly composed of Levantine Intermediate Water (LIW) and deep water masses formed in the Western Mediterranean Sea. The aim of this thesis is to validate and quantitatively assess the main routes of water masses composing the ouflow at Gibraltar Strait, using for the first time in the Mediterranean Sea a lagrangian interpretation of the eulerian velocity field produced from an eddy-resolving reanalysis dataset, spanning from 2000 to 2012. A lagrangian model named Ariane is used to map out three-dimensional trajectories in order to describe the pathways of water mass transport from the Strait of Sicily, the Gulf of Lyon and the Northern Tyrrhenian Sea to the Gibraltar Strait. Numerical experiments were carried out by seeding millions of particles in the Strait of Gibraltar and following them backwards in time to track the origins of water masses and transport exchanged between the different sections of the Mediterranean. Finally, the main routes of the intermediate and deep water masses are reconstructed from virtual particles trajectories, which highlight the role of the Western Mediterranean Deep Water (WMDW) as the main contributor to the Gibraltar Strait outflow. For the first time, the quantitative description of the flow of water masses coming from the Eastern Mediterranean towards the Gibraltar Strait is provided and a new route that directly links the Northern Tyrrhenian Sea to Gibralatr Strait has been detected.

New mitochondrial and nuclear evidences support recent demographic expansion and an atypical phylogeographic pattern in the Spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae)

Copyright: © 2014 Rodrigues et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Late Quaternary warm marine mollusks from Santa Maria (Azores); paleoecologic and paleobiogeographic considerations

The sub-fossil fauna from the Late Quaternary marine deposits of Santa Maria is made of more than 50 species of gastropods and bivalves, 19 of them collected recently and for the first time in the northern coast of the island (Lagoinhas Bay). The sub-fossil shells are found in deposits of beach sands, situated 2-3 meters above the present low tide. The carbonated sands from the basal part of the succession yield an autochthonous association of borers dominated by the bivalve Myoforceps aristata (Dillwin, 1817). Upwards, the marine sands contain concentrations of beach drift shells, including well-preserved supratidal and intertidal gastropods, among them a large number of Rissoidae. The bivalve fauna is dominated by disarticulated valves of Ervilia castanea (Montagu, 1803), a small infaunal coloniser of mobile sandy substrates. The composition of the fauna is made essentially of West European species, many of them common to the West Coast of Portugal. However, a few "warm guests" with West African or Caribbean affinities were also found, suggesting a close relation with some of the "Tyrrhenian" warm associations found in the Western Mediterranean.

Data for the sustainable management of an emerging fishery: Age, growth and stock structure of Atlantic saury Scomberesox saurus saurus (Walbaum), in the Northeastern Atlantic Ocean

Almost half of Ireland’s commercial stocks face overexploitation. As traditional species decrease in abundance and become less profitable, the industry is increasingly turning to alternate species. Atlantic saury (Scomberesox saurus saurus (Walbaum)) has been identified as a potential species for exploitation. Very little information is available on its biology or population dynamics, especially for Irish waters. This thesis aims to obtain sound scientific data, which will help to ensure that a future Atlantic saury fishery can be sustainably managed. The research has produced valuable data, some of which contradicts previous studies. Growth of Atlantic saury measured using otolith microstructure is found to be more than twice that previously calculated from annual structures on scales and otoliths. This results in a significant reduction of the expected life span from five to about two years. Investigation of maturity stage at age indicates that Atlantic saury will reproduce for the first time at age one and will survive for one or at most two reproduction seasons. It is concluded that a future Irish fishery will target mostly fish prior to their first reproduction. Finally the thesis gives some insights into the population structure of Atlantic saury, by analysis of otolith morphometric. Significant differences are detected between Northeastern Atlantic and western Mediterranean Sea specimens of the 0+ age class (less than one year old). The implications of these results for the management of an emerging fishery are discussed.

Anàlisi del desenvolupament floral d'un arbust mediterrani, la Globularia alypum, en poblacions costaneres i continentals

En aquest projecte s’ha estudiat la fenologia de floració de nou poblacions de G.alypum, un arbust de fulla perenne típic dels ambients termòfils de l’oest de l’Àrea Mediterrània, situades en diferents localitats de Catalunya. Aquesta espècie té una fenologia de la floració molt variable entre poblacions, ja que poden florir des de l’estiu tardà - tardor primerenca fins a la primavera següent depenent de la població. Es distingeixen dos grups de població, el de floració primerenca i el floració tardana. Les poblacions primerenques creixen, majoritàriament, a les localitats costaneres i floreixen des de setembre fins a novembre. Les poblacions tardanes creixen a les localitats d’interior i floreixen des de febrer fins a abril. En aquest treball es pretén millorar la comprensió sobre les diferències geogràfiques dels patrons de la fenologia floral entre les poblacions de G. alypum. Unes diferències que ja es manifesten al juliol, quan el desenvolupament floral es troba en els seus estadis preliminars. Alhora, en els mesos posteriors, l’increment del desenvolupament floral de les poblacions de G. alypum s’ha correlacionat positivament amb la temperatura mínima del mes de desembre. En aquest projecte també es pretén aprofundir en el coneixement sobre el desenvolupament floral d’aquesta espècie, descriure’n els diferents estadis i trobar un indicador adient per realitzar anàlisis estadístics. Uns aspectes gens banals tenint en compte la importància ecològica de la floració, sobretot en la seva sincronització amb el cicle vital dels pol·linitzadors així com en la seva importància adaptativa.

Anàlisi del metabolisme ambiental de nuclis turístics litorals: el cas de Menorca

L’objectiu del present estudi és l’anàlisi del metabolisme energètic associat a nuclis turístics litorals de l’illa de Menorca (Mediterrani occidental) i el grau d’autosuficiència a partir d’energies renovables. La caracterització dels nuclis i la definició del perfil del turista s’ha realitzat mitjançant SIG i informació de qualitat a partir d’enquestes. Els principals resultats mostren que els nuclis turístics de Menorca tenen unes emissions associades entre 213 i 318 kg de CO2 per estada. De mitjana, el recorregut del turista fins a la illa (mobilitat externa) és de 1334 km (representant el 80% de les emissions), mentre que la mobilitat interna durant l’estada és de 22 km. A diari, cada turista consumeix entre 8 i 26 kWh d’electricitat, consum que es podria satisfer en un 100% amb la instal·lació de sistemes fotovoltaics a les cobertes del nucli.