江苏省云台山7种野生中草药植物根区土壤真菌多样性研究

通过对江苏省云台山地区7种不同野生中草药植物烟台百里香(T.quinquecostatusCelak.)、掌叶半夏(P.pedatisectaSchott.)、何首乌(P.multiflorumThunb.)、海洲香薷(E.splendensNakai ex F.)、野葛[P.lobata(Willd)Ohwi]、紫金牛(A.japonicaBl.)和菝葜(S.sieboldiiMiq.)根区土壤真菌进行分离鉴定,共分离出真菌16属126种。多样性分析结果表明,7种野生中草药植物根区土壤真菌种群多样性丰富,其中青霉属(Penicillium)、曲霉属(Asper-gillus)和木霉属(Trichoderma)是中草药植物根区土壤中的优势种群,镰孢菌属(Fusarium)、交链孢属(Alternaria)、腐霉属(Pythium)、毛霉属(Mucor)真菌分布丰度也较高。结果也表明根区土壤真菌群落在一定程度上受到中草药植物的影响,大部分野生中草药植物根区土壤的真菌群落的均匀度指数低于裸地非根区土壤,而丰富度指数却高于裸地非根区土壤。不同野生中草药植物根区土壤真菌区系的结构和组成存在一定的差异性,紫金牛根区土壤中真菌种类最多,达到14属,而野葛根区土壤中真菌种类最少,只有8属。

Possible suppression of exogenous beta-1,3-glucanase gene gluc78 on rice transformation and growth

Three genes encoding for fungal cell wall degrading enzymes (CWDE), ech42, nag7O and gluc78 from the biocontrol fungus Trichoderma atroviride were transformed into rice mediated by Agrobacterium tumefaciens singly and in all possible combinations. A total of more than 1800 independently regenerated plantlets in seven different populations (for each of the three genes and each of the four gene combinations) were obtained. Our data indicated that gluc78 gene had negative effects on transformation frequency and plant growth. Some regenerated plants with gluc78 gene were stunted; spontaneously produced brown specks; could not tassel. The combination with either one of the two other genes (ech42, nag70) present in the same T-DNA region reduced the negative effect of gluc78 on plant growth. These results indicated that expression of several genes in one T-DNA region interfered with each other and expression of exogenous gene in recipient plant was a complex behavior. (c) 2007 Published by Elsevier Ireland Ltd.

微生物——铊相互作用的生物地球化学研究——以真菌（Fungus）为例

铊是一种有毒有害的重金属元素，已经引起了广泛的关注。本论文通过对黔西南铊矿区土壤和沉积物样品的菌株分离、铊高耐受性菌株的筛选、胞外吸附、富集、亚细胞水平区系分布、絮凝实验及ITS序列等实验研究分析，并结合铊的地球化学相关研究，较系统地阐述了真菌--铊的生物地球化学过程机理，得出以下结论： 1、与环境背景区相比，黔西南滥木厂铊矿区内的河流、土壤中铊的已有不同程度的积累，直接导致了当地微生物生物量在很大程度上的降低，微生物生物量与铊含量间有显著的负相关关系。研究区内的沉积物、土壤中的微生物区系结构和数量发生了明显变化，细菌、真菌及放线菌数量均出现显著降低，而且三大微生物对重金属污染的敏感性大小也不一样，即放线菌>细菌>真菌。从土壤样品中分离到的主要菌群仍为常见种属，如青霉属（Penicillium）、木霉属（Trichoderma）、拟青霉（Paecilomyces）等。 2、经过初筛菌株的铊耐受性实验，在1000 mg/L水平筛选得到九株高耐受性菌株。吸附实验表明：微生物菌株对铊的吸附效率在4.63～16.89%，且随着环境中铊浓度的上升而降低，这可能是因为铊浓度的升高加大了对微生物生长的抑制作用，所形成的菌丝体（或菌丝球）减少，表面积也相应减少，从而导致了吸附效率的下降。各种常量元素和铊的关系呈显著相关性，钙、钾和钠等常量元素也是微生物赖以维持生存的因子，可能由于微生物细胞对钙、钾的吸附方式与对铊的吸附方式类似。因此，随着铊处理浓度的上升，钙和钾的吸附量也随之减少，而钠则呈现相反的趋势。 3、富集实验表明，九株菌株对铊的富集量随着铊处理浓度上升而降低，其影响趋势与对生物量的影响趋势基本一致，最高可达到7189 mg/kg，最大富集系数为7.2。九株菌株对常量元素的富集与对铊的富集并无明显的相关性，但在考察铊处理浓度对常量元素的富集影响时发现，铊处理浓度的上升与对钙的富集量表现出较强的正相关；而对钾、钠、镁的富集影响并不明显。 4、亚细胞水平上的铊分布研究表明，铊的富集优先顺序为：细胞质>细胞壁>细胞器。亚细胞水平的区隔化作用是微生物对铊的主要耐受机制，细胞质是赋存铊的主要场所（53.83～79.45 %）。结合各亚细胞组分中常量元素与铊之间的相关性，并联系前人的研究，Tl+主要是通过细胞壁的Na+ -K+ ATPase和K+ -电位门通道进入细胞内的从而影响细胞的正常代谢的，而Ca2+的活化更有助于这一过程。 5、絮凝实验表明，培养三天后的发酵液对矿区废水中铊的去除率最高可达到70.49 %，最佳影响因子组合为：pH=8，温度为16℃，搅拌时间为4分钟。菌株的絮凝活性最高可达到57.32%，最佳影响因子组合为：pH=8，温度为14℃，搅拌时间为4分钟。 6、通过对九株铊高耐受性菌株的ITS序列分析及其在Gene Bank中的BLAST比对结果表明，五株菌株同属于木霉属（Trichoderma），两株菌株同属于青霉属（Penicillium）。这表明这两类真菌对铊的适应性较强，为以后寻找铊高耐受性菌株及其资源化利用提供了理论基础。

Crescimento de fungos na superfície de madeira de caixas do tipo 'K' usadas para hortaliças.

A madeira é o material mais utilizado para embalagem de hortaliças noBrasil, principalmente devido ao seu baixo custo e alta resistênciamecânica. O objetivo deste trabalho foi estimar a absorção e a perdaprogressiva de água de ripas de madeira de Pinus utilizadas namontagem de caixas do tipo "K" em três condições de umidade relativae determinar o crescimento de fungos em sua superfície. O experimentofoi conduzido no Laboratório de Pós-Colheita da Embrapa Hortaliças, emBrasília-DF, em 2003. Trinta ripas novas de madeira de Pinus (52 x 6 x0,6cm) foram pesadas individualmente, imersas em água durante 1h epesadas novamente para avaliar a absorção de água. Em outroexperimento, dez ripas foram incubadas ao acaso em cada uma das trêscâmaras úmidas (61%, 86% e 94% UR) mantidas a 25oC (±2oC). A perda progressiva de água foi avaliada por pesagens diárias das ripasindividualmente e o desenvolvimento de fungos na madeira foi avaliadocom uma escala de notas (0-3) durante oito dias. A madeira nova dePinus pode absorver até 38% de seu peso em água, e permanecerúmida durante vários dias de acordo com a condição dearmazenamento. A umidade relativa do ambiente afetou a taxa de perdade água diária da madeira, estimada em 4,7%, 2,5% e 1,0%respectivamente a 61% UR, 86% UR e 94% UR, e ao final de oito diasalcançou 37,5%, 19,9% e 7,9%, respectivamente. Os fungospredominantes foram Trichoderma harzianum e Rhizopus stolonifer, mastambém observou-se crescimento de Aspergillus sp. e Penicillium sp.

Controle biológico da podridão de raízes causada por Pythium spp. em cultivos hidropônicos.

2009

A exocorte da lima ácida 'Tahiti'.

Os citros podem ser infectados por várias espécies de viróides, dentre elas destaca-se o Citrus exocotis viróide, CEVd como o agente causal da exocorte dos citros. Esta doença está presente em praticamente todos as regiões citrícolas do mundo, associada aos sintomas de descamação em porta-enxertos como o limão ´Cravo' (Citrus limonia Osbeck) e o Poncirus trifoliata e ao nanismo de plantas neles estabelecidas. Na América Latina a lima ácida ´Tahiti' (C. latifolia Tan) é também descrita como suscetível à exocorte.

El riego por goteo como sistema para la aplicación de agentes biocontroladores de fitopatógenos del suelo

p.31-35

Eficiencia in vitro de antagonistas de Rhizoctonia solani y Sclerotium rolfsii y análisis camparativo de distintos modelos de crecimiento

p.59-65

Produção de enzimas celulósicas, usando resíduos industriais e seu uso como biocatalisador na produção de biocombustíveis

Dissertação mest., Engenharia Biológica, Universidade do Algarve, 2010

Dynamics of cork mycobiota throughout stopper manufacturing process: from diversity to metabolite

Dissertation presented to obtain the Ph.D degree in Biology

Alicaligenes faecalis : identification and study of its antagonistic properties against Botrytis cinerea

A Gram negative aerobic flagellated bacterium with fungal growth inhibitory properties was isolated from a culture of Trichoderma harzianum. According to its cultural characteristics and biochemical properties it was identified as a strain of Alcaligenes (aeca/is Castellani and Chalmers. Antisera prepared in Balbc mice injected with live and heat-killed bacterial cells gave strong reactions with the homologous immunogen and with ATCC 15554, the type strain of A. taeca/is, but not with Escherichia coli or Enterobacter aerogens in immunoprecipitation and dot immunobinding assays. Growth of Botrytis cinerea Pers. and several other fungi was significantly affected when co-cultured with A. taeca/is on solid media. Its detrimental effect on germination and growth of B. cinerea has been found to be associated with antifungal substances produced by the bacterium and released into the growth medium. A biotest for the antibiotic substances, based on their inhibitory effect on germination of B. cinerea conidia, was developed. This biotest was used to study the properties of these substances, the conditions in which they are produced, and to monitor the steps of their separation during extraction procedures. It has been found that at least two substances could be involved in the antagonistic interaction. One of these is a basic volatile substance and has been identified as ammonia. The other substance is a nonvolatile, dialysable, heat stable, polar compound released into the growth medium. After separation of growth medium samples by Sephadex G-10 column chromatography a single peak with a molecular weight below 700 Daltons exhibited inhibitory activity. From its behaviour in electrophoretic separation in agarose gels it seems that this is a neutral or slightly positively charged.

The significance of volatile antifungal metabolites produced by trichomerma harzianum biotype Th4, in green-mould disease of commercial mushroom crops /

The aggressive mushroom competitor, Trichoderma harzianum biotype Th4, produces volatile antifungal secondary metabolites both in culture and during the disease cycle in compost. Th4 cultures produced one such compound only when cultured in the presence of Agaricus bisporus mycelium or liquid medium made from compost colonised with A. bisporus. This compound has TLC and UVabsorption and characteristics indicating that it belongs to a class of pyrone antibiotics characterised from other T. harzianum biotypes. UV absorption spectra indicated this compound was not 6-pentyl-2H-pyran-one (6PAP), the volatile antifungal metabolite widely described in Th1. Furthermore, this compound was not produced by Th1 under any culture conditions. Mycelial growth of A. bisporus, Botrytis cinerea and Sclerotium cepivorum was inhibited in the presence of this compound through volatility , diffusion and direct application. This indicates that Th4 produces novel, volatile, antifungal metabolites in the presence of A. bisporus that are likely involved in green mould disease of mushroom crops.

Protein subcellular targeting inTrichoderma aggressivum f. aggressivum

Trichoderma aggressivum f. aggressivum is a filamentous soil fungus. Green mold disease of commercial mushrooms caused by this species in North America has resulted in millions of dollars in lost revenue within the mushroom growing industry. Research on the molecular level of T aggressivum have jus t begun with the goal of understanding the functions of each gene and protein, and their expression control. Protein targeting has not been well studied in this species yet. Therefore, the intent of this study was to test the protein localization and production levels in T aggressivum with green fluorescent protein (GFP) with an intron and tagged with either nuclear localization signal (NLS) or an endoplasmic reticulum retention signal (KDEL). Two GFP constructs (with and without the intron) were used as controls in this study. All four constructs were successfully transferred into T aggressivum and all modified strains showed similar growth characteristics as the wild type non-transformed isolate. GFP expression was detected from all modified T aggressivum with confocal microscopy and the expression was similar in all four strains. The intron tested in this study had no or very minor effects as GFP expression was similar with or without it. The GFP signal increased over a 5 day period for all transformants, while the GFP to total protein ratio decreased over the same period for all transformants. The GFP-KDEL transformant showed similar protein expression level and localization as did the control transformant lacking the KDEL retention signal. The GFP-NLS transformant similarly failed to localize GFP into nucleus as fluorescence with this strain was virtually identical to the GFP transformant lacking the NLS. Thus, future research is required to find effective localization signals for T aggressivum.

Développement de méthodes analytiques de séparation des produits de digestion enzymatique des dérivés de cellulose

La cellulose et ses dérivés sont utilisés dans un vaste nombre d’applications incluant le domaine pharmaceutique pour la fabrication de médicaments en tant qu’excipient. Différents dérivés cellulosiques tels que le carboxyméthylcellulose (CMC) et l’hydroxyéthylcellulose (HEC) sont disponibles sur le commerce. Le degré de polymérisation et de modification diffèrent énormément d’un fournisseur à l’autre tout dépendamment de l’origine de la cellulose et de leur procédé de dérivation, leur conférant ainsi différentes propriétés physico-chimiques qui leurs sont propres, telles que la viscosité et la solubilité. Notre intérêt est de développer une méthode analytique permettant de distinguer la différence entre deux sources d’un produit CMC ou HEC. L’objectif spécifique de cette étude de maitrise était l’obtention d’un profil cartographique de ces biopolymères complexes et ce, par le développement d’une méthode de digestion enzymatique donnant les oligosaccharides de plus petites tailles et par la séparation de ces oligosaccharides par les méthodes chromatographiques simples. La digestion fut étudiée avec différents paramètres, tel que le milieu de l’hydrolyse, le pH, la température, le temps de digestion et le ratio substrat/enzyme. Une cellulase de Trichoderma reesei ATCC 26921 fut utilisée pour la digestion partielle de nos échantillons de cellulose. Les oligosaccharides ne possédant pas de groupements chromophores ou fluorophores, ils ne peuvent donc être détectés ni par absorbance UV-Vis, ni par fluorescence. Il a donc été question d’élaborer une méthode de marquage des oligosaccharides avec différents agents, tels que l’acide 8-aminopyrène-1,3,6-trisulfonique (APTS), le 3-acétylamino-6-aminoacridine (AA-Ac) et la phénylhydrazine (PHN). Enfin, l’utilisation de l’électrophorèse capillaire et la chromatographie liquide à haute performance a permis la séparation des produits de digestion enzymatique des dérivés de cellulose. Pour chacune de ces méthodes analytiques, plusieurs paramètres de séparation ont été étudiés.

Influence of fibrolytic enzymes on the hydrolysis and fermentation of pure cellulose and xylan by mixed ruminal microorganisms in vitro

A series of in vitro studies was, conducted to determine the effects of adding a commercial enzyme product on the hydrolysis and fermentation of cellulose, xylan, and a mixture (1:1 wt/wt) of both. The enzyme product (Liquicell 2500, Specialty Enzymes and Biochemicals, Fresno, CA) was derived from Trichoderma reesei and contained mainly xylanase and cellulase activities. Addition of enzyme (0.5, 2.55 and 5.1 muL/g of DM) in the absence of ruminal fluid increased (P < 0.001) the release of reducing sugars from xylan and the mixture after 20 h of incubation at 20degreesC. Incubations with ruminal fluid showed that enzyme (0.5 and 2.55 muL/g of DM) increased (P < 0.05) the initial (up to 6 h) xylanase, endoglucanase, and beta-D-glucosidase activities in the liquid fraction by an average of 85%. Xylanase and endoglucanase activities in the solid fraction also were increased (P < 0.05) by enzyme addition, indicating an increase in fibrolytic activity due to ruminal microbes. Gas production over 96 h of incubation was determined using a gas pressure measurement technique. Incremental levels of enzyme increased (P < 0.05) the rate of gas production of all substrates, suggesting that fermentation of cellulose and xylan was enzyme-limited. However, adding the enzyme at levels higher than 2.55 muL/g of DM failed to further increase the rate of gas production, indicating that the maximal level of stimulation was already achieved at lower enzyme concentrations. It was concluded that enzymes enhanced the fermentation of cellulose and xylan by a combination of pre- and postincubation effects (i.e., an increase in the release of reducing sugars during the pretreatment phase and an increase in the hydrolytic activity of the liquid and solid fractions of the ruminal fluid), which was reflected in a higher rate of fermentation.