Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth

Among various groups of fishes, a shift in peak wavelength sensitivity has been correlated with changes in their photic environments. The genus Sebastes is a radiation of marine fish species that inhabit a wide range of depths from intertidal to over 600 m. We examined 32 species of Sebastes for evidence of adaptive amino acid substitution at the rhodopsin gene. Fourteen amino acid positions were variable among these species. Maximum likelihood analyses identify several of these to be targets of positive selection. None of these correspond to previously identified critical amino acid sites, yet they may in fact be functionally important. The occurrence of independent parallel changes at certain amino acid positions reinforces this idea. Reconstruction of habitat depths of ancestral nodes in the phylogeny suggests that shallow habitats have been colonized independently in different lineages. The evolution of rhodopsin appears to be associated with changes in depth, with accelerated evolution in lineages that have had large changes in depth.

On Semi-weakly n-Hyponormal Weighted Shifts

Semi-weak n-hyponormality is defined and studied using the notion of positive determinant partition. Several examples related to semi-weakly n-hyponormal weighted shifts are discussed. In particular, it is proved that there exists a semi-weakly three-hyponormal weighted shift W (alpha) with alpha (0) = alpha (1) < alpha (2) which is not two-hyponormal, which illustrates the gaps between various weak subnormalities.

Quadratically Hyponormal Weighted Shifts with Recursive Tail

We characterize positive quadratic hyponormality of the weighted shift W-alpha(x) associated to the weight sequence alpha(x) : 1, 1, root x, (root u, root v, root w)(Lambda) with Stampfli recursive tail, and produce an interval in x with non-empty interior in the positive real line for quadratic hyponormality but not positive quadratic hyponormality for such a shift. (C) 2013 Elsevier Inc. All rights reserved.

Backward Extensions of Recursively Generated Weighted Shifts and Quadratic Hyponormality

Given the weight sequence for a subnormal recursively generated weighted shift on Hilbert space, one approach to the study of classes of operators weaker than subnormal has been to form a backward extension of the shift by prefixing weights to the sequence. We characterize positive quadratic hyponormality and revisit quadratic hyponormality of certain such backward extensions of arbitrary length, generalizing earlier results, and also show that a function apparently introduced as a matter of convenience for quadratic hyponormality actually captures considerable information about positive quadratic hyponormality.

k-Hyponormality and n-Contractivity for Agler-Type Shifts

We consider k-hyponormality and n-contractivity (k, n = 1, 2, ...) as "weak subnormalities" for a Hilbert space operator. It is known that k-hyponormality implies 2k-contractivity; we produce some classes of weighted shifts including a parameter for which membership in a certain n-contractive class is equivalent to k-hyponormality. We consider as well some extensions of these results to operators arising as restrictions of these shifts, or from linear combinations of the Berger measures associated with the shifts.

EXPLORING CHANGES IN DETRITAL FLOCCULENT LAYER DYNAMICS DUE TO SHIFTS IN MACROPHYTE COMMUNITIES IN THE NORTHERN EVERGLADES

A shift in plant communities of the Water Conservation Areas (WCAs) within the Everglades has been linked to changes in hydrology and high levels of nutrient loading from surrounding agicultural areas. This has resulted in the encroachment of dense cattail stands (Typha domingensis) into areas that had previously been a ridge and slough landscape populated primarily by native sawgrass (Cladium jamaicense). In order to study ecological management solutions in this area, WCA-2A was broken into study plots; several of which became open water areas through the application of herbicide and burning regimens. The open water areas allowed for Chara spp (a submersed algal species) to replace Typha domingensis as the dominant macrophyte. This study investigated the polymer and ionic profiles of Chara spp, Typha domingensis and Cladium jamaicense and their contributions to detrital flocculent (floc) in the study plots where they are the dominant macrophytes. Floc is not only an important food source for aquatic species; it also supports many algal, fungal and bacterial communities. Data gathered in this study indicated that the floc sample from a phosphorus enriched open water study plot (EO1) where Chara spp was the dominant macrophyte may contain cell wall polymers from sources other than Chara spp (most likely Typha domingensis), while the chemical and polymeric profile of the floc of the study plot where Typha domingensis is the dominant macrophyte (EC1) suggests that the floc layer has contributions from algal sources as well as Typha domingensis. Additionally, monoclonal antibodies to Arabinoglalactan protein (AGP) and (1,4)-β-D galactan were identified as possible biomarkers for distinguishing algal dominated floc layers from layers dominated by emergent vegetation. Calcium labeling could be a useful tool for this as well because of the high amount of Ca2+ associated with Chara spp cell walls. When looking into the soluble phosphorus content of the macrophytes and paired floc samples of WCA-2A, it was found that Chara spp may be contributing a greater amount of Ca-bound phosphorus to floc layers where it is the dominant macrophyte when compared to floc layers from study plots dominated by emergent macrophytes. Floc layers also appear to be acting as a nutrient sink for soluble phosphorus. The findings of this study support the overall hypothesis that the shift from native emergent macrophyte communities to submersed macrophyte communities in study sites of the northern Everglades is affecting the polymeric/chemical profile and ionic content of detrital floc layers. The effects of this shift may contribute to changes in complex flocculent community dynamics.

Paleo erosion rates and climate shifts recorded by Quaternary cut-and-fill sequences in the Pisco valley, central Peru

Fluvial cut-and-fill sequences have frequently been reported from various sites on Earth. Nevertheless, the information about the past erosional regime and hydrological conditions have not yet been adequately deciphered from these archives. The Quaternary terrace sequences in the Pisco valley, located at ca. 13°S, offer a manifestation of an orbitally-driven cyclicity in terrace construction where phases of sediment accumulation have been related to the Minchin (48–36 ka) and Tauca (26–15 ka) lake level highstands on the Altiplano. Here, we present a 10Be-based sediment budget for the cut-and-fill terrace sequences in this valley to quantify the orbitally forced changes in precipitation and erosion. We find that the Minchin period was characterized by an erosional pulse along the Pacific coast where denudation rates reached values as high as 600±80 mm/ka600±80 mm/ka for a relatively short time span lasting a few thousands of years. This contrasts to the younger pluvial periods and the modern situation when 10Be-based sediment budgets register nearly zero erosion at the Pacific coast. We relate these contrasts to different erosional conditions between the modern and the Minchin time. First, the sediment budget infers a precipitation pattern that matches with the modern climate ca. 1000 km farther north, where highly erratic and extreme El Niño-related precipitation results in fast erosion and flooding along the coast. Second, the formation of a thick terrace sequence requires sufficient material on catchment hillslopes to be stripped off by erosion. This was most likely the case immediately before the start of the Minchin period, because this erosional epoch was preceded by a >50 ka-long time span with poorly erosive climate conditions, allowing for sufficient regolith to build up on the hillslopes. Finally, this study suggests a strong control of orbitally and ice sheet forced latitudinal shifts of the ITCZ on the erosional gradients and sediment production on the western escarpment of the Peruvian Andes at 13° during the Minchin period.

A TEX 86 lake record suggests simultaneous shifts in temperature in Central Europe and Greenland during the last deglaciation

High-resolution quantitative temperature records from continents covering glacial to interglacial transitions are scarce but important for understanding the climate system. We present the first decadal resolution record of continental temperatures in Central Europe during the last deglaciation (similar to 14,60010,600cal. yrB.P.) based on the organic geochemical palaeothermometer TEX86. The TEX86-inferred temperature record from Lake Lucerne (Vierwaldstattersee, Switzerland) reveals typical oscillations during the Late Glacial Interstadial, followed by an abrupt cooling of 2 degrees C at the onset of Younger Dryas and a rapid warming of 4 degrees C at the onset of the Holocene, within less than 350years. The remarkable resemblance with the Greenland and regional stable oxygen isotope records suggests that temperature changes in continental Europe were dominated by large-scale reorganizations in the northern hemispheric climate system.

Circum-Antarctic Coastal Environmental Shifts During the Late Quaternary Reflected by Emerged Marine Deposits

This review assesses the circumpolar occurrence of emerged marine macrofossils and sediments from Antarctic coastal areas in relation to Late Quaternary climate changes. Radiocarbon ages of the macrofossils, which are interpreted in view of the complexities of the Antarctic marine radiocarbon reservoir and resolution of this dating technique, show a bimodal distribution. The data indicate that marine species inhabited coastal environments from at least 35000 to 20000 yr sp, during Marine Isotope Stage 3 when extensive iceberg calving created a 'meltwater lid' over the Southern Ocean. The general absence of these marine species from 20000 to 8500 yr sp coincides with the subsequent advance of the Antarctic ice sheets during the Last Glacial Maximum. Synchronous re-appearance of the Antarctic marine fossils in emerged beaches around the continent, all of wh ich have Holocene marine-limit elevations an order of magnitude lower than those in the Arctic, reflect minimal isostatic rebound as relative sea-level rise decelerated. Antarctic coastal marine habitat changes around the continent also coincided with increasing sea-ice extent and outlet glacial advances during the mid-Holocene. in view of the diverse environmental changes that occurred around the Earth during this period, it is suggested that Antarctic coastal areas were responding to a mid-Holocene climatic shift associated with the hydrological cycle. This synthesis of Late Quaternary emerged marine deposits demonstrates the application of evaluating circum-Antarctic phenomena from the glacial-terrestrial-marine transition zone.