Proof for a nonproteinaceous calcium-selective channel in Escherichia coli by total synthesis from (R)-3-hydroxybutanoic acid and inorganic polyphosphate

Traditionally, the structure and properties of natural products have been determined by total synthesis and comparison with authentic samples. We have now applied this procedure to the first nonproteinaceous ion channel, isolated from bacterial plasma membranes, and consisting of a complex of poly(3-hydroxybutyrate) and calcium polyphosphate. To this end, we have now synthesized the 128-mer of hydroxybutanoic acid and prepared a complex with inorganic calcium polyphosphate (average 65-mer), which was incorporated into a planar lipid bilayer of synthetic phospholipids. We herewith present data that demonstrate unambiguously that the completely synthetic complex forms channels that are indistinguishable in their voltage-dependent conductance, in their selectivity for divalent cations, and in their blocking behavior (by La3+) from channels isolated from Escherichia coli. The implications of our finding for prebiotic chemistry, biochemistry, and biology are discussed.

Importance of anchor genomes for any plant genome project

Progress in agricultural and environmental technologies is hampered by a slower rate of gene discovery in plants than animals. The vast pool of genes in plants, however, will be an important resource for insertion of genes, via biotechnological procedures, into an array of plants, generating unique germ plasms not achievable by conventional breeding. It just became clear that genomes of grasses have evolved in a manner analogous to Lego blocks. Large chromosome segments have been reshuffled and stuffer pieces added between genes. Although some genomes have become very large, the genome with the fewest stuffer pieces, the rice genome, is the Rosetta Stone of all the bigger grass genomes. This means that sequencing the rice genome as anchor genome of the grasses will provide instantaneous access to the same genes in the same relative physical position in other grasses (e.g., corn and wheat), without the need to sequence each of these genomes independently. (i) The sequencing of the entire genome of rice as anchor genome for the grasses will accelerate plant gene discovery in many important crops (e.g., corn, wheat, and rice) by several orders of magnitudes and reduce research and development costs for government and industry at a faster pace. (ii) Costs for sequencing entire genomes have come down significantly. Because of its size, rice is only 12% of the human or the corn genome, and technology improvements by the human genome project are completely transferable, translating in another 50% reduction of the costs. (iii) The physical mapping of the rice genome by a group of Japanese researchers provides a jump start for sequencing the genome and forming an international consortium. Otherwise, other countries would do it alone and own proprietary positions.

Distribution of foraminiferal fauna from ODP Hole 122-762C (Table 1)

Planktonic foraminiferal diversity, equitability and biostratigraphic analysis of samples from Ocean Drilling Program (ODP) Leg 122, Hole 762C show that in general, cool water conditions prevailed during the latest Campanian-Maastrichtian in the eastern Indian Ocean. This is indicated by planktonic foraminiferal assemblages characterized by low species diversity and equitability with abundant rugoglobigerinids and heterohelicids. Archaeoglobigerinids, globigerinelloids, hedbergellids, and long-ranging double-keeled globotruncanids are also present in varying abundance but single-keeled forms occur rarely and sporadically. Identification of the stage and zonal boundaries for the studied geologic interval have been achieved through biostratigraphic analyses of closely spaced samples. Three planktonic foraminiferal biozones were identified, namely; in stratigraphic order, the Heterohelix rajagopalani, Contusotruncana contusa and Abathomphalus mayaroensis Zones. In Hole 762C, a Transitional Realm with Austral influences is defined for the latest Campanian to Maastrichtian, as shown by the high relative abundance of fauna characteristic of Transitional and Austral Realms. Austral endemic species such as Archaeoglobigerina australis Huber and Hedbergella sliteri Huber were found in the samples studied but Globigerinelloides impensus Sliter andA rchaeoglobigerina mateola Huber are conspicuously absent. From the latest Campanian to middle Maastrichtian, cooler parts of the Transitional Realm prevailed. A slight warming trend is assumed towards the end of the middle Maastrichtian because the faunas contain more species indicative of warm water conditions. The late Maastrichtian also appears to have been warmer than the latest Campanian-middle Maastrichtian. This conclusion is based on the high diversity and equitability values and recognition of some thermophilic taxa. A Tethyan influence is inferred for the latest Maastrichtian on the basis of an increase of planktonic foraminiferal species diversity and occurrences of several keeled taxa.

The gardeners labyrinth, or, A new art of gardening : wherein is laid down new and rare inventions and secrets of gardening not heretofore known : for sowing, planting, and setting all manner of roots, herbs, and flowers, both for the use of the kitchen garden, and a garden of pleasure ... /

"Reprinted for the first time since the edition dated 1652, from the copy now owned by Mrs. Rosetta E. Clarkson."--T.p. verso.

The decrees of Memphis and Canopus, /

v.1-2. The Rosetta stone.--v.3 The decree of Canopus.

The decrees of Memphis and Canopus /

The texts of the decrees are in the original Egyptian and Greek, with translations into English, Latin, German, and French.

Egyptological researches,

"The 'first' bilingual decree of Philae ... is a modified copy of the famous decree of Rosetta."--pt. 4.

Mimicking the action of GroEL in molecular dynamics simulations: Application to the refinement of protein structures

Bacterial chaperonin, GroEL, together with its co-chaperonin, GroES, facilitates the folding of a variety of polypeptides. Experiments suggest that GroEL stimulates protein folding by multiple cycles of binding and release. Misfolded proteins first bind to an exposed hydrophobic surface on GroEL. GroES then encapsulates the substrate and triggers its release into the central cavity of the GroEL/ES complex for folding. In this work, we investigate the possibility to facilitate protein folding in molecular dynamics simulations by mimicking the effects of GroEL/ES namely, repeated binding and release, together with spatial confinement. During the binding stage, the (metastable) partially folded proteins are allowed to attach spontaneously to a hydrophobic surface within the simulation box. This destabilizes the structures, which are then transferred into a spatially confined cavity for folding. The approach has been tested by attempting to refine protein structural models generated using the ROSETTA procedure for ab initio structure prediction. Dramatic improvements in regard to the deviation of protein models from the corresponding experimental structures were observed. The results suggest that the primary effects of the GroEL/ES system can be mimicked in a simple coarse-grained manner and be used to facilitate protein folding in molecular dynamics simulations. Furthermore, the results Sur port the assumption that the spatial confinement in GroEL/ES assists the folding of encapsulated proteins.