Sediment color variation in laminated Holocene sediments of ODP Site 178-1098

Continuous sediment color records with a resolution of one measurement per millimeter were generated for Site 1098 (Palmer Deep, Antarctic Peninsula) from digital images of the core surfaces to test if the laminated intervals at this site will allow for analysis of high-frequency climate variability in the Circum-Antarctic. Long-term variation in color values correlates with gamma-ray attenuation bulk density. Darker colors are found in laminated intervals with lower bulk density, high biogenic silica, and high total organic carbon content. Darker color values result from the addition of dark laminae to background sediments that show little variation in color. The thicknesses of dark and light laminae were measured in the top 25 meters composite depth to determine the temporal resolution of the laminae. The alternation between dark, biogenic-rich laminae and background sediment essentially represents an annual cycle, but the sediment is not consistently varved. The modal thickness of light laminae is close to the long-term average annual accumulation rate, and results indicate that approximately half of the dark/light couplets in distinctly laminated intervals represent a single year. Missing biogenic laminae are interpreted to represent reduced primary productivity during cold years with delayed breakup of the sea-ice cover.

The effects of parabens on the mechanosensitive channels of E. coli

Parabens are alkyl esters of p-hydroxybenzoic acid used as preservatives in a wide range of food, pharmaceutical, and cosmetic products (Soni et al. Food Chem. Toxicol. 39:513-532, 2001). Despite their common use for over 50 years, their mechanism of action is still unclear. In this study we examined the effects of ethyl and propyl paraben, on gating of the E. coli mechanosensitive channel of large conductance (MscL) reconstituted into azolectin liposomes. We found that propyl and ethyl paraben spontaneously activate MscL. Moreover, the addition of propyl paraben caused an increase in MscL activity and the lowering Of P-1/2, the pressure at which the MscL was opened 50% of the time, the AGO, the free energy required to open the MscL, and the parameter a, which describes the channel sensitivity to pressure. In addition, in silico studies showed that propyl paraben binds to the channel gate of the MscL. The mechanosensitive channel of small conductance was also found to be spontaneously activated by parabens. In summary, our study indicates that one of the previously unidentified mechanisms of action of parabens as antimicrobial agents is via an interaction with the mechanosensitive channels to upset the osmotic gradients in bacteria.

Determination of the orientational distribution and orientation factor for transfer between membrane-bound fluorophores using a confocal microscope

Orientational fluorophores have been a useful tool in physical chemistry, biochemistry, and more recently structural biology due to the polarized nature of the light they emit and that fact that energy can be transferred between them. We present a practical scheme in which measurements of the intensity of emitted fluorescence can be used to determine limits on the mean and distribution of orientation of the absorption transition moment of membrane-bound. uorophores. We demonstrate how information about the orientation of. uorophores can be used to calculate the orientation factor k(2) required for use in FRET spectroscopy. We illustrate the method using images of AlexaFluor probes bound to MscL mechanosensitive transmembrane channel proteins in spherical liposomes.