Molecular Characterization of Viruses Causing the Cassava Brown Streak Disease Epidemic in Eastern Africa

Cassava brown streak disease (CBSD) was described for the first time in Tanganyika (now Tanzania) about seven decades ago. Tanganyika (now Tanzania) about seven decades ago. It was endemic in the lowland areas of East Africa and inland parts of Malawi and caused by Cassava brown streak virus (CBSV; genus Ipomovirus; Potyviridae). However, in 1990s CBSD was observed at high altitude areas in Uganda. The causes for spread to new locations were not known.The present work was thus initiated to generate information on genetic variability, clarify the taxonomy of the virus or viruses associated with CBSD in Eastern Africa as well as to understand the evolutionary forces acting on their genes. It also sought to develop a molecular based diagnostic tool for detection of CBSD-associated virus isolates. Comparison of the CP-encoding sequences of CBSD-associated virus isolates collected from Uganda and north-western Tanzania in 2007 and the partial sequences available in Genbank revealed occurrence of two genetically distinct groups of isolates. Two isolates were selected to represent the two groups. The complete genomes of isolates MLB3 (TZ:Mlb3:07) and Kor6 (TZ:Kor6:08) obtained from North-Western (Kagera) and North-Eastern (Tanga) Tanzania, respectively, were sequenced. The genomes were 9069 and 8995 nucleotides (nt), respectively. They translated into polyproteins that were predicted to yield ten mature proteins after cleavage. Nine proteins were typical in the family Potyviridae, namely P1, P3, 6K1, CI, 6K2, VPg, NIa-Pro, NIb and CP, but the viruses did not contain HC-Pro. Interestingly, genomes of both isolates contained a Maf/HAM1-like sequence (HAM1h; 678 nucleotides, 25 kDa) recombined between the NIb and CP domains in the 3’-proximal part of the genomes. HAM1h was also identified in Euphorbia ringspot virus (EuRSV) whose sequence was in GenBank. The HAM1 gene is widely spread in both prokaryotes and eukaryotes. In yeast (Saccharomyces cerevisiae) it is known to be a nucleoside triphosphate (NTP) pyrophosphatase. Novel information was obtained on the structural variation at the N-termini of polyproteins of viruses in the genus Ipomovirus. Cucumber vein yellowing virus (CVYV) and Squash vein yellowing virus (SqVYV) contain a duplicated P1 (P1a and P1b) but lack the HC-Pro. On the other hand, Sweet potato mild mottle virus (SPMMV), has a single but large P1 and has HC-Pro. Both virus isolates (TZ:Mlb3:07 & TZ:Kor6:08) characterized in this study contained a single P1 and lacked the HC-Pro which indicates unique evolution in the family Potyviridae. Comparison of 12 complete genomes of CBSD-associated viruses which included two genomes characterized in this study, revealed genetic identity of 69.0–70.3% (nt) and amino acid (aa) identities of 73.6–74.4% at polyprotein level. Comparison was also made among 68 complete CP sequences, which indicated 69.0-70.3 and 73.6-74.4 % identity at nt and aa levels, respectively. The genetic variation was large enough for dermacation of CBSD-associated virus isolates into two distinct species. The name CBSV was retained for isolates that were related to CBSV isolates available in database whereas the new virus described for the first time in this study was named Ugandan cassava brown streak virus (UCBSV) by the International Committee on Virus Taxonomy (ICTV). The isolates TZ:Mlb3:07 and TZ:Kor6:08 belong to UCBSV and CBSV, respectively. The isolates of CBSV and UCBSV were 79.3-95.5% and 86.3-99.3 % identitical at nt level, respectively, suggesting more variation amongst CBSV isolates. The main sources of variation in plant viruses are mutations and recombination. Signals for recombination events were detected in 50% of isolates of each virus. Recombination events were detected in coding and non-coding (3’-UTR) sequences except in the 5’UTR and P3. There was no evidence for recombination between isolates of CBSV and UCBSV. The non-synonomous (dN) to synonomous (dS) nucleotide substitution ratio (ω) for the HAM1h and CP domains of both viruses were ≤ 0.184 suggesting that most sites of these proteins were evolving under strong purifying selection. However, there were individual amino acid sites that were submitted to adaptive evolution. For instance, adaptive evolution was detected in the HAM1h of UCBSV (n=15) where 12 aa sites were under positive selection (P< 0.05) but not in CBSV (n=12). The CP of CBSV (n=23) contained 12 aa sites (p<0.01) while only 5 aa sites in the CP gene of UCBSV were predicted to be submitted to positive selection pressure (p<0.01). The advantages offered by the aa sites under positive selection could not be established but occurrence of such sites in the terminal ends of UCBSV-HAMIh, for example, was interpreted as a requirement for proteolysis during polyprotein processing. Two different primer pairs that simultaneously detect UCBSV and CBSV isolates were developed in this study. They were used successfully to study distribution of CBSV, UCBSV and their mixed infections in Tanzania and Uganda. It was established that the two viruses co-infect cassava and that incidences of co-infection could be as high as 50% around Lake Victoria on the Tanzanian side. Furthermore, it was revealed for the first time that both UCBSV and CBSV were widely distributed in Eastern Africa. The primer pair was also used to confirm infection in a close relative of cassava, Manihot glaziovii (Müller Arg.) with CBSV. DNA barcoding of M. glaziovii was done by sequencing the matK gene. Two out of seven M. glaziovii from the coastal areas of Korogwe and Kibaha in north eastern Tanzania were shown to be infected by CBSV but not UCBSV isolates. Detection in M. glaziovii has an implication in control and management of CBSD as it is likely to serve as virus reservoir. This study has contributed to the understanding of evolution of CBSV and UCBSV, which cause CBSD epidemic in Eastern Africa. The detection tools developed in this work will be useful in plant breeding, verification of the phytosanitary status of materials in regional and international movement of germplasm, and in all diagnostic activities related to management of CBSD. Whereas there are still many issues to be resolved such as the function and biological significance of HAM1h and its origin, this work has laid a foundation upon which the studies on these aspects can be based.

A delta13C record of late Quaternary climate change from tropical peats in southern India

STABLE-ISOTOPE ratios of carbon in soils or lake sediments1-3 and of oxygen and hydrogen in peats4,5 have been found to reflect past moisture variations and hence to provide valuable palaeoclimate records. Previous applications of the technique to peat have been restricted to temperate regions, largely because tropical climate variations are less pronounced, making them harder to resolve. Here we present a deltaC-13 record spanning the past 20 kyr from peats in the Nilgiri hills, southern India. Because the site is at high altitude (>2,000 m above sea level), it is possible to resolve a clear climate signal. We observe the key climate shifts that are already known to have occurred during the last glacial maximum (18 kyr ago) and the subsequent deglaciation. In addition, we observe an arid phase from 6 to 3.5 kyr ago, and a short, wet phase about 600 years ago. The latter appears to correspond to the Mediaeval Warm Period, which previously was believed to be confined to Europe and North America6,7. Our results therefore suggest that this event may have extended over the entire Northern Hemisphere.

Influences of the springtime northern Indian biomass burning over the central Himalayas

The influences of the springtime northern Indian biomass burning are shown for the first time over the central Himalayas by using three years (2007-2009) of surface and space based observations along with a radiative transfer model. Near-surface ozone, black carbon (BC), spectral aerosol optical depths (AODs) and the meteorological parameters are measured at a high altitude site Nainital (29.37 degrees N, 79.45 degrees E, 1958 m amsl) located in the central Himalayas. The satellite observations include the MODIS derived fire counts and AOD (0.55 mu m), and OMI derived tropospheric column NO(2), ultraviolet aerosol index and single scattering albedo. MODIS fire counts and BC observations are used to identify the fire-impacted periods (372 h during 2007-2009) and hence the induced enhancements in surface BC, AOD (0.5 mu m) and ozone are estimated to be 1802 ng m(-3) (similar to 145%), 0.3 (similar to 150%) and 19 ppbv (similar to 34%) respectively. Large enhancements (53-100%) are also seen in the satellite derived parameters over a 2 degrees x 2 degrees region around Nainital. The present analysis highlights the northern Indian biomass burning induced cooling at the surface (-27 W m(-2)) and top of the atmosphere (-8 W m(-2)) in the lesser polluted high altitude regions of the central Himalayas. This cooling leads to an additional atmospheric warming of 19 W m(-2) and increases the lower atmospheric heating rate by 0.8 K day(-1). These biomass burning induced changes over the central Himalayan atmosphere during spring may also lead to enhanced short-wave absorption above clouds and might have an impact on the monsoonal rainfall.

Transient electric field distribution within the working volume of an NEMP simulator

Nuclear electro-magnetic pulse (NEMP) simulators which are used in the simulation of transient electromagnetic fields due to a high altitude nuclear detonation are generally excited with a double exponential high voltage pulse. This results in a current distribution on the wires of the simulator and hence a transient electric field in the working volume of the simulator where the test object is kept. It is found that for the simulator under study, the current distribution is non-uniform and so is the field distribution along the width of the simulator in the working volume. To make the current distribution uniform, several methods have been suggested and the results of these methods are analyzed and suitable conclusions are arrived at from those results.

Radiative effects of elevated aerosol layer in Central Himalayas

Systematic observations of light detection and ranging (LIDAR) to detect elevated aerosol layer were carried out at Manora Peak (29.4 degrees N, 79.5 degrees E, similar to 1960 m a.s.l), Nainital, in the Central Himalayas during January-May 2008. In spite of being a remote, high-altitude site, an elevated aerosol layer is observed quite frequently in the altitude range of 2460-4460 m a.s.l with a width of similar to 2 km during the observation period. We compare these profiles with the vertical profiles observed over Gadanki (13.5 degrees N, 79.2 degrees E, similar to 370 m a.s.l), a tropical station, where no such elevated aerosol layer was found. Further, there is a steady increase in aerosol optical depth (AOD) from January (winter) to May (summer) from 0.043 to 0.742, respectively, at Manora Peak, indicating aerosol loading in the atmosphere. Our observations show north-westerly winds indicating the convective lifting of aerosols from far-off regions followed by horizontal long-range transport. The presence of strongly absorbing and scattering aerosols in the elevated layer resulted in a relatively large diurnal mean aerosol surface radiative forcing efficiency (forcing per unit optical depth) of about -65 and -63 W m(-2) and the corresponding mean reduction in the observed net solar flux at the surface (cooling effect) is as high as -22 and -30 W m(-2). The reduction of radiation will heat the lower atmosphere by redistributing the radiation with heating rate of 1.13 and 1.31 K day(-1) for April and May 2008, respectively, in the lower atmosphere.

VAM Applied to Dimensional Reduction of Nonlinear Multifunctional Film-fabric Laminates

This work aims at asymptotically accurate dimensional reduction of non-linear multi-functional film-fabric laminates having specific application in design of envelopes for High Altitude Airships (HAA). The film-fabric laminate for airship envelope consists of a woven fabric core coated with thin films on each face. These films provide UV protection and Helium leakage prevention, while the core provides required structural strength. This problem is both geometrically and materially non-linear. To incorporate the geometric non-linearity, generalized warping functions are used and finite deformations are allowed. The material non-linearity is handled by using hyper-elastic material models for each layer. The development begins with three-dimensional (3-D) nonlinear elasticity and mathematically splits the analysis into a one-dimensional through-the-thickness analysis and a two-dimensional (2-D) plate analysis. The through-the-thickness analysis provides the 2-D constitutive law which is then given as an input to the 2-D reference surface analysis. The dimensional reduction is carried out using Variational Asymptotic Method (VAM) for moderate strains and very small thickness-to-wavelength ratio. It features the identification and utilization of additional small parameters such as ratio of thicknesses and stiffness coefficients of core and films. Closed form analytical expressions for warping functions and 2-D constitutive law of the film-fabric laminate are obtained.

Molecular phylogeny of Glyphochloa (Poaceae, Panicoideae), an endemic grass genus from the Western Ghats, India

The genus Glyphochloa (Poaceae: Panicoideae: Andropogoneae: Rottboellinae) is endemic to peninsular India and is distributed on lateritic plateaus of low and high altitude in and around Western Ghats and the Malabar Coast. The genus presumably originated and diversified in the Western Ghats. Species relationships in the genus Glyphochloa were deduced here based on molecular phylogenies inferred using nuclear ribosomal ITS sequences and plastid intergenic spacer regions (atpB-rbcL, trnT-trnL, trnL-trnF), and new observations were made of spikelet morphology, caryopsis morphology and meiotic chromosome counts. We observed two distinct clades of Glyphochloa s.l. One of these (group I') includes Ophiuros bombaiensis, and is characterized by a single-awned lower glume and a base chromosome number of 6; it grows in low elevation coastal areas. The other clade (group II') has a double-awned lower glume, a base chromosome number of 7, and is restricted to higher elevation lateritic plateaus; G. ratnagirica may belong to the group II clade, or may be a third distinct lineage in the genus. A sister-group relationship between group I and II taxa (with or without G. ratnagirica) is not well supported, although the genus is recovered as monophyletic in shortest trees inferred using ITS or concatenated plastid data. We present a key to species of Glyphochloa and make a new combination for O. bombaiensis.

航天运载器尾舱高空热环境数值分析

航天运载器在70km以上高空高速飞行，火箭发动机的喷流是影响其尾舱热环境的主要因素之一。采用代数方程和偏微分方程相结合的多块网格生成方法，达到热流计算中对近壁面网格的正交性和分布上的要求；通过改进的NND有限体积法高超程序，数值耦合求解多组分NS方程、湍流方程、热辐射方程和非平衡化学反应方程，提高了壁面热流计算的精度。计算结果与飞行遥测及地面实验结果对比分析表明，所采用的计算方法及得到的结果是正确有效的。

Rarefied gas dynamics: fundamentals, simulations and micro flows

Kinetic studies of gas flows

Our recent studies on kinetic behaviors of gas flows are reviewed in this paper. These flows have a wide range of background, but share a common feature that the flow Knudsen number is larger than 0.01. Thus kinetic approaches such as the direct simulation Monte Carlo method are required for their description. In the past few years, we studied several micro/nano-scale flows by developing novel particle simulation approach, and investigated the flows in low-pressure chambers and at high altitude. In addition, the microscopic behaviors of a couple of classical flow problems were analyzed, which shows the potential for kinetic approaches to reveal the microscopic mechanism of gas flows.

Densidade, genética e saúde populacional como ferramentas para propor um plano de controle e erradicação de invasão biológica: o caso de Callithrix aurita (Primates) no Parque Nacional da Serra dos Órgãos, RJ, Brasil

A introdução de espécies em locais fora de sua distribuição natural é uma preocupação importante na conservação da biodiversidade. A espécie Callithrix aurita é endêmica das regiões de floresta de altitude da Mata Atlântica do Sudeste do Brasil. Os critérios mais relevantes que a enquadram como espécie ameaçada de extinção são: destruição do habitat, incapacidade de adaptação a florestas secundárias degradadas, declínio populacional, distribuição restrita e introdução de espécies exóticas invasoras. Estes critérios, aliados à evidente raridade, explicam a sua inclusão na Lista Oficial de Espécies da Fauna Brasileira Ameaçadas de Extinção. Os objetivos do trabalho são: estimar o tamanho populacional de C. aurita, C. penicillata e seus híbridos no Parque Nacional da Serra dos Órgãos, avaliar a hibridação entre as espécies por caracteres morfológicos e laboratoriais, verificar o estado de saúde e confirmar a participação de C. aurita na paternidade dos animais capturados, propor um plano de erradicação e de controle de invasão de C. penicillata no Parque. Os tamanhos populacionais das duas espécies de primatas foram estimados através do método Distance Sampling. Um total de sete sagüis foi capturado com armadilhas de captura viva para a contenção física e química e posterior realização dos procedimentos. Para o hemograma, as dosagens bioquímicas e as análises genéticas, o sangue foi recolhido em um tubo de ensaio contendo anticoagulante e mantido em temperatura de refrigeração até o momento da manipulação / processamento das amostras. Callithrix aurita parece estar bem preservada apenas na área do Parque correspondente ao trecho situado no município de Petrópolis. As análises citogenéticas e moleculares dos híbridos são uma ferramenta útil para confirmar se há ou não hibridação, identificando as espécies envolvidas e verificando se há tendência nos retrocruzamentos. Pode-se sugerir que existe uma tendência à diferenciação das espécies e identificação de indivíduos híbridos pelo padrão hematológico e bioquímico, a ser confirmada com uma amostragem maior de animais da espécie C. aurita, preferencialmente da mesma localidade e nas mesmas condições. No caso de C. aurita, as principais recomendações para sua conservação incluem pesquisas para o registro de outras populações em áreas de distribuição livres de invasão, para que se possa avaliar as chances de recuperação populacional e sobrevivência da espécie. A criação de novas Unidades de Conservação deve ser estimulada, assim como estudos mais aprofundados sobre a espécie nos locais já conhecidos de ocorrência, além de um programa seguro de criação em cativeiro.

Primary cosmic-ray positrons and negatrons in 1968 at energies between 11 and 204 MeV

The cosmic-ray positron and negatron spectra between 11 and 204 MeV have been measured in a series of 3 high-altitude balloon flights launched from Fort Churchill, Manitoba, on July 16, July 21, and July 29, 1968. The detector system consisted of a magnetic spectrometer utilizing a 1000-gauss permanent magnet, scintillation counters, and a lucite Čerenkov counter.

Launches were timed so that the ascent through the 100 g/cm² level of residual atmosphere occurred after the evening geomagnetic cutoff transition. Data gathered during ascent are used to correct for the contribution of atmospheric secondary electrons to the flux measured at float altitude. All flights floated near 2.4 g/cm².

A pronounced morning intensity increase was observed in each flight. We present daytime positron and negatron data which support the interpretation of the diurnal flux variation as a change in the local geomagnetic cutoff. A large diurnal variation was observed in the count rate of positrons and negatrons with magnetic rigidities less than 11 MV and is evidence that the nighttime cutoff was well below this value.

Using nighttime data we derive extraterrestrial positron and negatron spectra. The positron-to-total-electron ratio which we measure indicates that the interstellar secondary, or collision, source contributes ≾50 percent of the electron flux within this energy interval. By comparing our measured positron spectrum with the positron spectrum calculated for the collision source we derive the absolute solar modulation for positrons in 1968. Assuming negligible energy loss during modulation, we derive the total interstellar electron spectrum as well as the spectrum of directly accelerated, or primary, electrons. We examine the effect of adiabatic deceleration and find that many of the conclusions regarding the interstellar electron spectrum are not significantly altered for an assumed energy loss of up to 50 percent of the original energy.

A comunidade de anuros em uma área de floresta ombrófila densa montana do Parque Estadual dos Três Picos, sudeste do Brasil

O conhecimento sobre a fauna de anfíbios em áreas de altitude (> 1000 m) da Mata Atlântica do sudeste do Brasil é ainda insuficiente. O Parque Estadual dos Três Picos (PETP), no estado do Rio de Janeiro, constitui um dos maiores remanescentes de Mata Atlântica do estado inserido em uma Unidade de Conservação. Os limites do PETP abrangem um amplo gradiente altitudinal, alcançando mais de 2000 m de elevação e protegem áreas de cinco municípios do estado do Rio de Janeiro. Neste estudo, eu apresento dados de três anos de amostragem e pesquisa (2008-2010) sobre a composição e a abundância de espécies de anfíbios em área de altitude localizada entre 1100 e 1400 m no PETP, distrito de Theodoro de Oliveira, município de Nova Friburgo, estado do Rio de Janeiro, Brasil. O esforço amostral total foi de 360 horas de buscas ativas, padronizado em 180 horas de procura em cada uma das estações do ano (úmida e seca). Foram registradas 32 espécies de anuros durante o estudo, das quais 18 representaram novos registros para o Parque e três novas espécies ainda não conhecidas da Ciência foram descobertas (Holoaden pholeter, recentemente descrita, foi uma delas). As espécies mais abundantes foram os anuros de desenvolvimento direto Ischnocnema parva e I. erythromera. Nove das 32 espécies encontradas são consideradas endêmicas do estado do Rio de Janeiro: Brachycephalus sp., B. didactylus, B. garbeanus, Ischnocnema cf. holti, I. erythromera, Bokermannohyla carvalhoi, Scinax albicans, H. pholeter e Hylodes charadranaetes. Houve diferença em alguns parâmetros da comunidade entre as estações e entre as faixas de altitude amostradas, com uma maior riqueza e abundância de anuros na estação úmida do que na seca, e mudança na composição de espécies entre as estações. Apesar de nenhuma das espécies registradas durante o estudo constar na lista de espécies ameaçadas, H. pholeter pode ser um candidato à inclusão na categoria vulnerável da Lista das Espécies Ameaçadas de Extinção da IUCN, devido à sua distribuição geográfica conhecida ser restrita apenas à localidade tipo (Theodoro de Oliveira) e à sua densidade populacional ser aparentemente baixa. . A alta diversidade de anfíbios, com espécies endêmicas ao estado, e a ocorrência de espécies raras atestam a relevância biológica das áreas estudadas no PETP.

O sagui-da-serra-escuro (Callithrix aurita) e os saguis invasores no Parque Nacional da Serra dos Órgãos, RJ, Brasil: distribuição espacial e estratégias de conservação

O sagui-da-serra-escuro (Callithrix aurita) (É.Geoffroy, 1812) é uma espécie endêmica da Mata Atlântica e ameaçada de extinção, considerada em perigo. Callithrix jacchus e C. penicillata são espécies invasoras no Estado do Rio de Janeiro, que competem com C. aurita pelos mesmos recursos, além de formarem híbridos. Nesse contexto, avaliamos a distribuição espacial das espécies de saguis (nativa e invasoras) no interior e entorno do Parque Nacional da Serra dos Órgãos (PARNASO), RJ, Brasil, através do método de playback, entrevistas, e a modelagem de ocupação e detecção. Além disso, comparamos os dados de distribuição atual com os registros de ocorrência anteriores a esse estudo. Os resultados mostraram que a população de saguis nativos e invasores presentes no interior no parque possuem probabilidade de ocupação (0,20 e 0,22), detecção (0,22 e 0,26) e abundância (12,65 e 13,68 grupos) semelhantes. A ocupação de C. aurita está relacionada às áreas do parque mais afastadas da estrada e com menor interferência humana, provavelmente pelo efeito da elevada altitude nessas regiões. Enquanto que a ocupação dos saguis invasores está relacionada à proximidade dos limites do parque e a maior interferência humana, tanto em maiores altitudes quanto em menores. Registramos o processo de hibridação entre saguis nativos e invasores, e a formação de grupos mistos entre eles, em diversos pontos da região de Petrópolis, inclusive no interior do parque, evidenciando as consequências do processo de invasão. Concluímos que a população de Callithrix aurita no PARNASO é pequena, restrita a uma única região do parque, e parte dela possui contato com grupos de saguis invasores, ou está bem próxima deles. As espécies de saguis invasores ocorrem em alguns locais no interior do parque e por todo o seu entorno. Portanto, há uma pressão dos saguis invasores em direção ao interior do PARNASO. Diante deste processo de extinção local de uma espécie endêmica, ameaçada de extinção, e com uma restrita distribuição geográfica, alertamos para a urgente necessidade de iniciar um eficiente programa de manejo das espécies de saguis invasores, juntamente com a reintrodução de grupos de Callithrix aurita.

青藏高原过牧草地上灌木种类和分布对小尺度植被格局的影响

植物种间作用是决定物种分布、种群动态、群落演变和生态系统功能的重要因子。长期以来，相关研究集中在竞争作用上。然而自1990年代以来，易化作用逐渐受到重视，被认为是植物群落中物种共存的主要推动力，尤其是在极端和受到干扰的环境中。很多研究都揭示出植物对其他特定的物种产生直接或间接的正向的作用。护卫植物主要通过两种机制对临近的物种产生正向作用，即对恶劣的自然环境的改善和对高强度干扰的阻止和减轻。灌木在很多条件下能够成为护卫植物，影响种群的分布、群落的多样性和生态系统的功能。 中国西南部的青藏高原的牧场上，非生物的环境胁迫（比如生长季短暂、辐射强度大和极端温度等）和生物的干扰作用（比如过度放牧等）都很强。有文献表明，随着过度放牧现象的加重和草地的不断退化，灌木的分布有逐渐扩大的趋势。针对灌木对过度放牧草地上小尺度植被格局的影响，我们在若尔盖地区展开了以下两方面的研究。 为了研究不同种类灌木的影响，我们在若尔盖高原上选择了既具有恶劣的自然环境又遭受过度放牧压力的草地，对三种灌木内外的相同大小面积上小尺度范围内的植被进行调查。三种灌木分别是高山绣线菊、窄叶鲜卑花和金露梅，它们在形态结构、高度和可食性上都存在差异。在不考虑灌木种类的基础上，我们发现物种丰度、总盖度、开花的物种数和花序数都是灌木内部高于外部，而均匀度则恰好相反，是外部要高于内部，香农多样性指数内外没有明显的差异。金露梅灌丛中内外物种丰度和均匀度的差异要明显高于窄叶鲜卑花，但是总盖度、开花的物种数和花序数的差异不随着灌木种类的不同而有明显的差异。大多数的物种（占总物种数的47-85%）并没有因为灌木的存在而在内外出现的频数上表现出差异，而相当一部分物种（占总物种数的13-39%）在灌木外部的频率要高，仅仅有很少的物种（占总物种数的3-13%）因为灌木的存在而受益，内部的频数要高于外部。这种对某些物种的保护作用没有表现在群落水平上，即提高群落的物种丰富度和多样性，因为同时发生的灌木和其他植物的竞争作用也会限制以致排除冠层下面某些物种的存在。灌木的可食性和形态结构（比如盖度、高度、冠层的紧实度等）能对它们跟其他植物的相互之间净作用的类型和强度产生影响。不同的灌木能保护不同种类、不同数量的植物，表明易化作用是物种特异性的，跟护卫植物有关，也跟受益者有关。通过植被的排序，金露梅和高山绣线菊内外的植被得到了很明显的分离，而窄叶鲜卑花的则没有。总体上来说，灌木的存在确实能够通过提高出现或开花的频率，保护了某些对放牧比较敏感的物种，而且这种易化作用是物种特异性的。内外植被的差异在放牧压力最大的金露梅灌丛中最大，表明过度放牧导致的大尺度的植被状况对于小尺度上灌丛内外的植被的差异所起的作用比灌木种类的作用更大。 为了研究同种灌木不同的分布类型对植被格局的影响，选择金露梅作为目标灌木。金露梅是当地常见灌木，有的植株孤立存在，有的则是很多株联合形成比较大的斑块。我们选择金露梅形成的斑块中央、外沿金露梅植株内部、外围和孤立的金露梅植株内部、外部五个位置，并在小尺度上进行了植被调查和比较，发现金露梅的存在确实保护了一些物种，但是种类有限，反而是大部分的物种在外部的频数要高与内部;从群落水平来看，金露梅冠层下的植被从丰富度、多样性上来讲并没有超过外部，仅仅是具有更高的均匀度和同质性;生殖方面的结果也是类似的，而且大部分物种跟其分布呈现出基本类似的格局。金露梅斑块的存在和自然围栏的产生没有起到很明显的保护作用，并没有使得斑块中央植被的丰富度、多样性、均匀度提高，而仅仅是提高了植物的长势（表现为具有较高的总盖度等）;在物种水平，没有发现什么特异种的存在，仅仅发现能够促进一些物种在内部的生长或开花，而且比例很低。在这种效应的影响下，斑块边缘的金露梅相对于孤立的金露梅而言，也没有表现出更好的保护植被的能力。几乎所有的群落水平的指标都仅仅是受到灌木内外这个因素的影响，而两种分布格局（即：在斑块边缘和孤立存在）的影响是微乎其微的。植被排序的结果也充分证明了这一点，灌木内外的植被被明显的分离开来，而不同灌木中相应位置的植被则是混杂在一起。并且在物种水平上，除了极个别的物种之外，绝大部分物种内外的差异是是一致的，没有受到灌木分布格局的影响。即使个别物种具有不同的格局，也没有证据表明是受到了斑块中央植被的影响而产生的。