Functional analysis of human POT1 and RPA : insights into the role of single stranded DNA binding proteins at telomeres

Abstract Telomeres, the natural ends of chromosomes, need to be protected from chromosome end fusions, aberrant homologous recombination and degradation. In humans, chromosome ends are specified through arrays of tandemly repeated 5'-TTAGGG-3' hexamers, ending in a 3' overhang. A complex formed by the six proteins TRF1, TRF2, hRap1, TIN2, TPP1 and POT1 specifically assocìates with and protects telomeres. Telomeres are maintained by semiconservative DNA replication and by a specialized reverse transcriptase, telomerase, that carries an RNA subunit which templates new telomeric repeat synthesis. The telomeric single stranded (ss) DNA binding protein POT1 protects the telomeric 3' overhang and modulates telomerase-mediated telomere elongation. It is possible that POT1 also influences DNA synthesis during semiconservative DNA replication, which is initiated by the DNA polymerase alpha-primase complex. The heterotrimeric ss DNA-binding protein RPA plays essential roles during DNA replication. RPA binds to ss DNA with high affinity in order to stabilize ss DNA and facilitate nascent strand synthesis at the replication fork. Here we investigate how the two proteins RPA and POT1 contribute to telomere maintenance by regulating semi-conservative DNA replication and telomerase. Using chromatin immunoprecipitation experiments, we show that RPA associates with telomeres during S-phase. Analysis of telomere structure in cells shRNA-depleted for RPA and POT1 reveals that loss of RPA and POT1 causes exposure of single-stranded DNA at telomeres, suggestive of incomplete DNA replication. Biochemical experiments using purified recombinant POT1 and RPA show that saturating telomeric oligonucleotides with POT1 or RPA reduces the primase activity of the DNA polymerase alpha-primase complex and the overall activity of telomerase. POT1 and RPA also increase the primer extension by DNA polymerase alpha-primase complex and the processivity of telomerase under certain conditions, although POT1 increases the activities to a greater extent than RPA. We propose that POT1 is required for proper replication of the lagging strand of telomeres and that some phenotypes observed in POT1-depleted cells may stern from incomplete DNA replication rather than de-protection of the single-stranded overhang. Résumé Les télomères, les extrémités normales des chromosomes linéaires, doivent être protégés des fusions chromosomiques, d'événements de recombinaison homologue aberrants et de phénomènes de dégradation. Chez l'Homme, les extrémités des chromosomes sont constitués d'ADN double brin répétitif de séquence 5'-TTAGGG-3', d'une extension simple brin 3' sortante et d'un complexe protéique formé des six facteurs TRF1, TRF2, hRap1, TIN2, TPP1 et POT1 qui, s'associant à cette séquence, protègent l'ADN télomèrique. Les télomères sont maintenus par la télomérase, une transcriptase inverse capable d'allonger l'extension 3' sortante télomérique. POT1 lie l'ADN simple brin télomérique et module l'élongation des télomères par la télomérase. POT1 pourrait en théorie également influencer la réplication semi-conservative de l'ADN. L'ADN-polymérase Pal alpha-primase amorce et initie la synthèse d'ADN. Pendant la réplication, l'ADN simple brin est stabilisé par RPA, un complexe hétérotrimèrique qui lie l'ADN simple brin. RPA facilite la synthèse du brin naissant à la fourche de réplication. Ici nous avons étudié comment ces deux protéines qui lient l'ADN simple brin, RPA et POT1, régulent la réplication des télomères par la télomérase et la machinerie classique de réplication de l'ADN. Par immunoprécipitation de chromatine (ChIP), nous montrons que RPA est localisé aux télomères lors de la phase S du cycle cellulaire. De plus, l'analyse de la structure des télomeres indique que !a perte de RPA ou de POT1 conduit à l'apparition d'ADN simple brin télomérique, suggérant une réplication incomplète de l'ADN télomérique in vivo. Par une approche complémentaire biochimique utilisant les protéines POT1 et RPA recombinantes purifiées, nous montrons également que la liaison de POT1 ou de RPA à des oligonucléotides télomériques bloque l'activité primase du complexe polymérase alpha/primase et réduit l'activité télomérase sur ces substrats. En revanche, leur liaison augmente l'activité ADN-polymérase du complexe polymérase alpha/primase, ainsi que fa processivité de la télomérase dans certaines conditions, POT1 étant le plus efficace des deux facteurs. Nous proposons que POT1 est nécessaire à la réplication du brin retardé au niveau des télomères, ce qui suggère que certains phénotypes des cellules déplétés en POT1 puissent résulter d'une réplication incomplète de l'ADN télémétrique plutôt que d'une déprotection de l'extrémité sortante des télomères.

Haematopoietic stem cell transplantation: activity in Switzerland compared with surrounding European countries.

Haematopoietic stem cell transplantation (HSCT) is a highly specialised procedure used to treat malignancies of the lymphohaematopoietic system as well as some acquired and inherited disorders of the blood. This analysis by the Swiss Blood Stem Cell Transplantation Group, based on data from 2008-2011, describes, treatment rates in Switzerland for specific indications and compares this with data from Germany, France, Italy and the Netherlands, corrected for the size of the population. Differences in transplant rates, in rates for particular indications, and in the use of specific transplant technologies such as use of unrelated donors, use of cord blood or mismatched family donors are described. These data are put in correlation with donor availability from international registries and with number of transplant teams and number of procedures per team all corrected for population size.

Hematopoietic stem cell transplantation in Switzerland: a comprehensive quality control report on centre effect.

Interest groups advocate centre-specific outcome data as a useful tool for patients in choosing a hospital for their treatment and for decision-making by politicians and the insurance industry. Haematopoietic stem cell transplantation (HSCT) requires significant infrastructure and represents a cost-intensive procedure. It therefore qualifies as a prime target for such a policy. We made use of the comprehensive database of the Swiss Blood Stem Cells Transplant Group (SBST) to evaluate potential use of mortality rates. Nine institutions reported a total of 4717 HSCT - 1427 allogeneic (30.3%), 3290 autologous (69.7%) - in 3808 patients between the years 1997 and 2008. Data were analysed for survival- and transplantation-related mortality (TRM) at day 100 and at 5 years. The data showed marked and significant differences between centres in unadjusted analyses. These differences were absent or marginal when the results were adjusted for disease, year of transplant and the EBMT risk score (a score incorporating patient age, disease stage, time interval between diagnosis and transplantation, and, for allogeneic transplants, donor type and donor-recipient gender combination) in a multivariable analysis. These data indicate comparable quality among centres in Switzerland. They show that comparison of crude centre-specific outcome data without adjustment for the patient mix may be misleading. Mandatory data collection and systematic review of all cases within a comprehensive quality management system might, in contrast, serve as a model to ascertain the quality of other cost-intensive therapies in Switzerland.

Pieces of Iowa’s Past, May 1, 2013

Pieces of Iowa’s Past, published by the Iowa State Capitol Tour Guides weekly during the legislative session, features historical facts about Iowa, the Capitol, and the early workings of state government. All historical publications are reproduced here with the actual spelling, punctuation, and grammar retained THIS WEEK: Steamboating on the Rivers in Iowa BACKGROUND: Built at Wheeling, Virginia, in 1819, the steamboat Virginia was a small stern-wheeler of 109-132 tons, and was owned by Redick McKee, James Pemberton, and seven others. She was 118 feet long, 18 feet 10 inches beam, and her depth was 5 feet 2 inches. She had a cabin on deck but no pilot house, being guided by a tiller at the stern.

Astrocyte-neuron lactate transport is required for long-term memory formation.

We report that, in the rat hippocampus, learning leads to a significant increase in extracellular lactate levels that derive from glycogen, an energy reserve selectively localized in astrocytes. Astrocytic glycogen breakdown and lactate release are essential for long-term but not short-term memory formation, and for the maintenance of long-term potentiation (LTP) of synaptic strength elicited in vivo. Disrupting the expression of the astrocytic lactate transporters monocarboxylate transporter 4 (MCT4) or MCT1 causes amnesia, which, like LTP impairment, is rescued by L-lactate but not equicaloric glucose. Disrupting the expression of the neuronal lactate transporter MCT2 also leads to amnesia that is unaffected by either L-lactate or glucose, suggesting that lactate import into neurons is necessary for long-term memory. Glycogenolysis and astrocytic lactate transporters are also critical for the induction of molecular changes required for memory formation, including the induction of phospho-CREB, Arc, and phospho-cofilin. We conclude that astrocyte-neuron lactate transport is required for long-term memory formation.

Long-term outcomes of 118 patients with eosinophilic granulomatosis with polyangiitis (Churg-Strauss syndrome) enrolled in two prospective trials.

The purpose of this study was to assess the outcomes of 118 patients with eosinophilic granulomatosis with polyangiitis (EGPA) enrolled in 2 prospective, randomized, open-label clinical trials (1994-2005), with or without Five-Factor Score (FFS)-defined poor-prognosis factors, focusing on survival, disease-free survival, relapses, clinical and laboratory findings, therapeutic responses, and factors predictive of relapse. Forty-four patients with FFS ≥ 1 were assigned to receive 6 or 12 cyclophosphamide pulses plus corticosteroids and the seventy-four with FFS = 0 received corticosteroids alone, with immunosuppressant adjunction when corticosteroids failed. Patients were followed (2005-2011) under routine clinical care in an extended study and data were recorded prospectively. Mean ± SD follow-up was 81.3 ± 39.6 months. Among the 118 patients studied, 29% achieved long-term remission and 10% died. Among the 115 patients achieving a first remission, 41% experienced ≥1 relapses, 26.1 ± 26.8 months after treatment onset, with 57% of relapses occurring when corticosteroid-tapering reached <10 mg/day. Treatment achieved new remissions in >90%, but relapses recurred in 38%. Overall survival was good, reaching 90% at 7 years, regardless of baseline severity. Age ≥65 years was the only factor associated with a higher risk of death during follow-up. The risk of relapse was higher for patients with anti-myeloperoxidase antibodies and lower for those with >3000 eosinophils/mm(3). Sequelae remained frequent, usually chronic asthma and peripheral neuropathy. In conclusion, EGPA patients' survival rate is very good when treatment is stratified according to the baseline FFS. Relapses are frequent, especially in patients with anti-myeloperoxidase antibodies and baseline eosinophilia <3000/mm(3).

Le triangle primaire : le père, la mère, le bébé

Préface de Daniel N. Stern - Préface d'Édith Goldbeter Merinfeld - Introduction à la deuxième édition - Comment aborder la famille - Le modèle familial de Lausanne: présentation générale - Typologie des alliances - Les fondements structuraux des alliances familiales - Les fondements dynamiques des alliances familiales - La petite enfance du processus triangulaire - Alliance de travail et interventions d'encadrement - Consultations avec des thérapeutes et des familles - Du développement du nourrisson à la dynamique - Le triangle primaire - Annexe A : Résultats du LTP - Annexe B : Consigne du jeu trilogique de Lausanne

Adaptabilidade e estabilidade como critérios para seleção de genótipos de girassol

O objetivo deste trabalho foi comparar critérios para seleção de genótipos de girassol com base na média geral obtida em vários locais e sua decomposição em ambientes favoráveis e desfavoráveis e por meio de outros métodos de análise de adaptabilidade e estabilidade, como os de Eberhart & Russell, Lin & Binns, Carneiro e Carvalho et al. Foram analisados dados obtidos entre os anos de 1999 e 2004 na Rede Nacional de Ensaios de Girassol, coordenada pela Embrapa Soja e que conta com a participação de empresas públicas e privadas. Os caracteres avaliados foram rendimento de grãos e de óleo (kg ha-1). A análise da decomposição da média geral em médias de ambientes favoráveis e desfavoráveis (método da indicação com base na decomposição da média geral - IDMG) foi o critério mais adequado para a indicação de genótipos. A análise de regressão contribuiu com informações adicionais, indicando a responsividade e previsibilidade dos genótipos diante das mudanças ambientais.

KIR-associated protection from CMV replication requires pre-existing immunity: a prospective study in solid organ transplant recipients.

Previous studies have associated activating Killer cell Immunoglobulin-like Receptor (KIR) genes with protection from cytomegalovirus (CMV) replication after organ transplantation. Whether KIR-associated protection is operating in the context of primary infection, re-activation, or both, remains unknown. Here we correlated KIR genotype and CMV serostatus at the time of transplantation with rates of CMV viremia in 517 heart (n=57), kidney (n=223), liver (n=165) or lung (n=72) allograft recipients reported to the Swiss Transplant Cohort Study. Across the entire cohort we found B haplotypes-which in contrast to A haplotypes may contain multiple activating KIR genes-to be protective in the most immunosuppressed patients (receiving anti-thymocyte globulin induction and intensive maintenance immunosuppression) (hazard ratio after adjustment for covariates 0.46, 95% confidence interval 0.29-0.75, P=0.002). Notably, a significant protection was detected only in recipients who were CMV-seropositive at the time of transplantation (HR 0.45, 95% CI 0.26-0.77, P=0.004), but not in CMV seronegative recipients (HR 0.59, 95% CI 0.22-1.53, P=0.28). These data indicate a prominent role for KIR-and presumably natural killer (NK) cells-in the control of CMV replication in CMV seropositive organ transplant recipients treated with intense immunosuppression.

Evaluación económica de los impactos del cambio climático sobre la salud

El Informe Stern, realizado a instancias del Gobierno Británico, se ha convertido en el documento paradigmático de la economía del cambio climático. No solo proporciona una estimación de los costes del cambio climático, sino que resulta ser una aportación fundamental a la evaluación de los datos existentes y al fomento de un mayor conocimiento de los aspectos económicos del cambio climático. El informe tiene una perspectiva internacional, por cuanto el cambio climático es un problema mundial, tanto en sus causas como en sus consecuencias. La adopción de medidas colectivas a nivel internacional es crucial para conseguir una respuesta eficaz, eficiente y equitativa. Así, se insta a la comunidad internacional a actuar con fuerza y de forma inmediata en la toma de decisiones que permitan reducir las emisiones (de CO2) para que los efectos del cambio climático no comiencen a ser irremediables. De hecho, la principal conclusión del informe es que los beneficios de la adopción de medidas prontas y firmes sobre el cambio climático superarán con creces los costes

Texte et contexte dans la communication

DES FRONTIERES ENTRE TEXTE ET CONTEXTE : POINTS DE VUE THEORIQUES - Sur la métacommunication / C. Sluzki - De l'amour du texte à l'amour du contexte / J. Cosnier - Le dialogue entre l'intra-psychique et l'interpersonnel : une perspective développmentale / D. Stern - Texte et contexte. La perspective thermodynamique / R. Fivaz - Une position constructiviste pour la thérapie familiale / L. Hoffman MICROPROCESSUS DANS LES CONVERSATIONS : POINTS DE VUE EMPIRIQUES ET DEVELOPPEMENTAUX - Le contrat comme relation. Une étude des cadres sociaux du consentement / M. Modak - Recherche sur les axiomes de "Une logique de la communication" / J. Beavin-Bavelas - Distance physique ou distance psychique ? Les formations corporelles parents-bébé comme contextes de l'autonomisation dans la famille / C. Gertsch-Bettens - L'encadrement parental dans le jeu à trois. Une recherche exploratoire d'inspiration systémique / A. Corbosz-Warnery - L'évolution des formations corporelles lors de thérapies familiales en fonction de l'alliance thérapeutique / S. Serpa-Rusconi, P.-A. Doudin - Genèse de la négociation interpersonnelle des conflits : point de vue pragmatique / H. Jisa LES RECONTEXTUALISATIONS EN THERAPIE FAMILIALE - De l'ajustement du cadre en thérapie familiale / F. Seywert, E. Fivaz Depeursinge - Les questions réflexives, source d'autoguérison / K. Tomm...[et al.] - Langage et changement. L'usage de paroles-clés en thérapie / J. Pereira - Texte et contexte en psychosomatique : des modèles réductionnistes à une épistémologie de la complexité / L. Onnis