Platinum group elements and geochemistry of altered oceanic crust of ODP Hole 140-504B

Primary chemical heterogeneity in the sheeted dike complex in Deep Sea Drilling Project Hole 504B makes these rocks unsuitable for conventional mass balance calculations in determining element mobility associated with hydrothermal alteration. Due to the original heterogeneity and variable degrees of fractionation in the dikes, an appropriate reference sample on which calculations can be based is difficult to find. Therefore, the use of incompatible element ratios is developed to evaluate geochemical changes during alteration(s). For example, on a Zr/Yb-La/Yb plot, scatter along a straight line suggests tapping of a variably depleted mantle source and deviation from the line suggests element mobility (gain or loss). Using this method, our data indicates that the hydrothermal evolution of the sheeted dike complex was accompanied by significant loss of Cu, Zn, and Ti and some loss of La. The sheeted dike complex has low platinum group element (PGE) concentrations and steep PGE patterns, typical of mid-ocean ridge basalts (MORBs) on the global scale. We propose that the unusual PGE patterns of MORBs cannot be entirely generated by a partial melting and sulfide segregation model; instead, these patterns in part must have been inherited from their mantle source. The Au data show no evidence for mobilization during hydrothermal alteration of the dikes.

Planificación Participativa en la gestión urbana local, identificación de factores claves y nuevas formas de participación? Seguimiento a 13 Alcaldías del Área Metropolitana de Santiago, Chile

La presente tesis se presenta como un continuo de investigaciones realizadas durante el proceso de desarrollo del Doctorado en torno al tema de la Participación Ciudadana en la Gestión Urbana Local. El Objetivo general de la tesis es verificar y evaluar la existencia de una planificación participativa en la gestión urbana local en Chile. Los objetivos específicos abordan los factores clave que facilitan y restringen los procesos participativos en la gestión urbana local, la factibilidad de desarrollar nuevas formas de participación en el medio local y los avances que se han registrado o no en materia de planificación y gestión participativa en Chile. La Metodología planteada es de tipo cualitativa y se centra en el estudio del caso: la RED de Alcaldías Pro-Participación del Área Metropolitana de Santiago. Se utilizan diversos instrumentos metodológicos básicamente cualitativos donde destaca la utilización de la Transparencia Activa con 2 consultas a los 13 municipios, entrevistas a los Directores de la Secretaría de Planificación, SECPLA, a Encargados de las Unidades de Participación y con algunos Asesores Urbanos. Paralelamente en el segundo semestre del año 2013 se llevo a cabo una observación directa de los cabildos territoriales realizados en el marco del proceso de actualización del Plan de Desarrollo Comunal. Por último se realizó un Focus Group con integrantes de los Consejos de la Sociedad Civil de modo de complementar los resultados de las entrevistas y las consultas a los municipios. Todo lo anterior complementado con una revisión documental en relación a la conceptualización de la participación, los tipos de participación, los actores que intervienen en el proceso y los mecanismos o herramientas que hacen posible el desarrollo de estos procesos. Finalmente los resultados esperados, en el marco de los objetivos y las hipótesis planteadas estaban básicamente enfocados en los desafíos que impone llevar adelante una gestión más participativa y transparente. ABSTRACT This thesis is presented as a continuum of the research conducted during the development of the doctorate process on the subject of Citizen Participation in Local Urban Management. Initially referring to the more specific field of urban planning and in this case in the more general context of local planning. The overall aim of the thesis is to verify and assess the existence of participatory planning in local urban management in Chile. The specific objectives address the key factors that facilitate and constrain participatory processes in local urban management, the feasibility of developing new forms of participation in the local environment and the progress that has been registered or not in participatory planning and management in Chile. The proposed methodology is a qualitative approach and focuses on the case study: A Pro-Participation mayors of Greater Santiago. Basically using different qualitative methodological tools which highlights the use of Active Transparency with 2 consultations to the 13 municipalities, interviews with the directors of the Planning Office, SECPLAN, directors or managers of Participation Units in those municipalities that had created one and some professionals in charge of the Urban Office. Parallel to those methodological tools in the second half of 2013 was held a direct observation of the territorial councils (Caboildos Territoriales) made under the PLADECO update process. Finally, a focus group was held with members of the Civil Society Council, COSOC that will complement the results of interviews and consultations with municipalities. All this with tools in the context of a review of documents related to the conceptualization of participation, types of participation, the actors involved in the process and the mechanisms and tools that make possible these participatory processes. Finally the expected results within the framework of the objectives and hypotheses were basically focused on identifying the elements that facilitate or constrain participatory processes and identify accordingly the challenges posed pursue a more participatory and transparent management.

Explosive invasion of plant mitochondria by a group I intron

Group I introns are mobile, self-splicing genetic elements found principally in organellar genomes and nuclear rRNA genes. The only group I intron known from mitochondrial genomes of vascular plants is located in the cox1 gene of Peperomia, where it is thought to have been recently acquired by lateral transfer from a fungal donor. Southern-blot surveys of 335 diverse genera of land plants now show that this intron is in fact widespread among angiosperm cox1 genes, but with an exceptionally patchy phylogenetic distribution. Four lines of evidence—the intron’s highly disjunct distribution, many incongruencies between intron and organismal phylogenies, and two sources of evidence from exonic coconversion tracts—lead us to conclude that the 48 angiosperm genera found to contain this cox1 intron acquired it by 32 separate horizontal transfer events. Extrapolating to the over 13,500 genera of angiosperms, we estimate that this intron has invaded cox1 genes by cross-species horizontal transfer over 1,000 times during angiosperm evolution. This massive wave of lateral transfers is of entirely recent occurrence, perhaps triggered by some key shift in the intron’s invasiveness within angiosperms.

Functional antioxidant responsive elements

Exposure of human and rodent cells to a wide variety of chemoprotective compounds confers resistance against a broad set of carcinogens. For a subset of the chemoprotective compounds, protection is generated by an increase in the abundance of protective enzymes like glutathione S-transferases (GST). Antioxidant responsive elements (AREs) mediate the transcriptional induction of a battery of genes which comprise much of this chemoprotective response system. Past studies identified a necessary ARE “core” sequence of RTGACnnnGC, but this sequence alone is insufficient to mediate induction. In this study, the additional sequences necessary to define a sufficient, functional ARE are identified through systematic mutational analysis of the murine GST Ya ARE. Introduction of the newly identified necessary nucleotides into the regions flanking a nonresponsive, ARE-like, GST-Mu promoter sequence produced an inducible element. A screen of the GenBank database with the newly identified ARE consensus identified 16 genes which contained the functional ARE consensus sequence in their promoters. Included within this group was an ARE sequence from the murine ferritin-L promoter that mediated induction when tested. In an electrophoretic mobility-shift assay, the ferritin-L ARE was bound by ARE–binding protein 1, a protein previously identified as the likely mediator of the chemoprotective response. A three-level ARE classification system is presented to account for the distinct induction strengths observed in our mutagenesis studies. A model of the ARE as a composite regulatory site, where multiple transcription factors interact, is presented to account for the complex characteristics of ARE-mediated chemoprotective gene expression.

Group B streptococci escape host immunity by deletion of tandem repeat elements of the alpha C protein.

Group B streptococci (GBS) are the most common cause of neonatal sepsis, pneumonia, and meningitis. The alpha C protein is a surface-associated antigen; the gene (bca) for this protein contains a series of tandem repeats (each encoding 82 aa) that are identical at the nucleotide level and express a protective epitope. We previously reported that GBS isolates from two of 14 human maternal and neonatal pairs differed in the number of repeats contained in their alpha C protein; in both pairs, the alpha C protein of the neonatal isolate was smaller in molecular size. We now demonstrate by PCR that the neonatal isolates contain fewer tandem repeats. Maternal isolates were susceptible to opsonophagocytic killing in the presence of alpha C protein-specific antiserum, whereas the discrepant neonatal isolates proliferated. An animal model was developed to further study this phenomenon. Adult mice passively immunized with antiserum to the alpha C protein were challenged with an alpha C protein-expressing strain of GBS. Splenic isolates of GBS from these mice showed a high frequency of mutation in bca--most commonly a decrease in repeat number. Isolates from non-immune mice were not altered. Spontaneous deletions in the repeat region were observed at a much lower frequency (6 x 10(-4)); thus, deletions in that region are selected for under specific antibody pressure and appear to lower the organism's susceptibility to killing by antibody specific to the alpha C protein. This mechanism of antigenic variation may provide a means whereby GBS evade host immunity.