水稻分蘖逆制的可塑性生长发育试验和模型辅助分析: 应用植物生长模型缩减基因型与表现型的间隙

表现型是基因型和环境相互作用的结果，不同环境条件下给定基因型能表达为不同的表型，这是我们所熟知的植物表型可塑性。可塑性一方面帮助植物更好地适应不利环境，但我们也不得不承认可塑性，使得人们难以从表型直接理解基因功能。如今，基因组学快速发展允许解密基因更迅速便捷，甚至发现大量基因。因此，进一步理解可塑性过程的基因背景、理解基因和环境对表型的作用非常必要。由于从基因到表型非线性过程，从而引起基因型和表型差异，期望有效方法或工具能跨越这个横沟。植物生长模型已被开发用来模拟植物响应环境动态关系，并且将参数和环境整合到模型方法中。因此，普遍认为植物生长模型将在探讨复杂可塑性基因功能扮演重要作用。水稻是普遍应用在基因组学和功能基因组学典型的模式植物。水稻分蘖是重要的基因依赖环境敏感的过程，这是农学上非常关注的现象。本文将应用模型方法理解水稻分蘖逆制的可塑性。本研究设计了一个相对优化环境条件下，野生型水稻分蘖逆制试验，该试验有两个处理（1）手工剪切分蘖;（2）一个TDNA突变体，并分别设置对照。本试验在法国国际农业研究发展中心（CIRAD）温室开展，每个试验利用水培方法，培育植株50天左右（营养生长阶段）。在营养生长阶段，定期破坏性测量单个器官的鲜重、干重和单个器官的大小。本文尝试应用两个植物生长模型模拟和解释水稻响应分蘖逆制表型发育。GreenLab是一个植物结构数学模型，已被开发用来模拟植物结构动态和结构功能反馈。植物3D结构决定光捕获和生物产量，然后，生物量分配到新的器官，因此，器官形态结构将发生变化，新阶段的生物量生产将会更新。通过基于最小二乘法的CornerFit软件实现了模型参数优化。另一个模型EcoMeristem，基于作物模型和形态发生概念，用来模拟水稻分生组织活动、器官发生和形态过程等可塑性过程，内部竞争指数Ic主要与环境相关，参数主要描述基因功能。通过植物生长过程模拟与测量的优化，手工提取了模型参数。这两个植物生长模型演示了缩减基因型与表型之间的差距，并实现了水稻响应分蘖完全逆制的可塑性过程。GreenLab模型有一个极好的器官发生基础，但本研究限于单茎拓扑结构。另外，该模型有更长的时间步长，这对描述植物可塑性没有提供足够的分辨能力，这在EcoMeristem模型中得到了解决。很明显，EcoMeristem模型有更弱的结构基础，这可能蕴含了一些可塑性信息的缺失。总体而言，EcoMeristem模型有更专业的可塑性过程、基因环境理解和表达能力。

Numerical simulations of unsteady wet steam flows with non-equilibrium condensation in the nozzle and the steam turbine

Numerical techniques for non-equilibrium condensing flows are presented. Conservation equations for homogeneous gas-liquid two-phase compressible flows are solved by using a finite volume method based on an approximate Riemann solver. The phase change consists of the homogeneous nucleation and growth of existing droplets. Nucleation is computed with the classical Volmer-Frenkel model, corrected for the influence of the droplet temperature being higher than the steam temperature due to latent heat release. For droplet growth, two types of heat transfer model between droplets and the surrounding steam are used: a free molecular flow model and a semi-empirical two-layer model which is deemed to be valid over a wide range of Knudsen number. The computed pressure distribution and Sauter mean droplet diameters in a convergent-divergent (Laval) nozzle are compared with experimental data. Both droplet growth models capture qualitatively the pressure increases due to sudden heat release by the non-equilibrium condensation. However the agreement between computed and experimental pressure distributions is better for the two-layer model. The droplet diameter calculated by this model also agrees well with the experimental value, whereas that predicted by the free molecular model is too small. Condensing flows in a steam turbine cascade are calculated at different Mach numbers and inlet superheat conditions and are compared with experiments. Static pressure traverses downstream from the blade and pressure distributions on the blade surface agree well with experimental results in all cases. Once again, droplet diameters computed with the two-layer model give best agreement with the experiments. Droplet sizes are found to vary across the blade pitch due to the significant variation in expansion rate. Flow patterns including oblique shock waves and condensation-induced pressure increases are also presented and are similar to those shown in the experimental Schlieren photographs. Finally, calculations are presented for periodically unsteady condensing flows in a low expansion rate, convergent-divergent (Laval) nozzle. Depending on the inlet stagnation subcooling, two types of self-excited oscillations appear: a symmetric mode at lower inlet subcooling and an asymmetric mode at higher subcooling. Plots of oscillation frequency versus inlet sub-cooling exhibit a hysteresis loop, in accord with observations made by other researchers for moist air flow. Copyright © 2006 by ASME.

Morphometrics, length-weight relationship and condition of Rastrineobola argentea (Pellegrin 1904) in the Winam Gulf of Lake Victoria (Kenya)

Correlation between total length (TL), fork length (FL) and standard length (SL) of Raslrineobola argentea (pellegrin 1904) in the Winam Gulf of Lake Victoria indicate that FL = 0.92 TL - 0.74 and SL = 0.90 TL - 1.74. Length-weight relationship of log-transformed data shows that the slopes of the regression lines were 3.06 to 3.22 for juveniles, 2.70 to 3.05 for males and 3.24 to 3.71 for females. The slopes were significantly different between groups at at a =0.05. The Fulton's condition factor (K) was highest in December (1.019-1.073) and March/April (1.015-1.030) but lowest in June (1:00-1.025) for all stations. Significant differences between groups demands for the use of different growth models for juveniles, males and females especially for the von Bertalanffy growth equation which uses length-weight relationship. Observed cyclic viations in condition factor suggests two peak breeding seasons for this species in the Winam Gulf. The practical lmplications of these results in stock assessment using length-based fish stock assessment methods is briefly discussed.

Modelling and validation of wet steam flow in a low pressure steam turbine

Results of numerical investigations of the wet steam flow in a three stage low pressure steam turbine test rig are presented. The test rig is a scale model of a modern steam turbine design and provides flow measurements over a range of operating conditions which are used for detailed comparisons with the numerical results. For the numerical analysis a modern CFD code with user defined models for specific wet steam modelling is used. The effect of different theoretical models for nucleation and droplet growth are examined. It is shown that heterogeneous condensation is highly dependent on steam quality and, in this model turbine with high quality steam, a homogeneous theory appears to be the best choice. The homogeneous theory gives good agreement between the test rig traverse measurements and the numerical results. The differences in the droplet size distribution of the three stage turbine are shown for different loads and modelling assumptions. The different droplet growth models can influence the droplet size by a factor of two. An estimate of the influence of unsteady effects is made by means of an unsteady two-dimensional simulation. The unsteady modelling leads to a shift of nucleation into the next blade row. For the investigated three stage turbine the influence due to wake chopping on the condensation process is weak but to confirm this conclusion further investigations are needed in complete three dimensions and on turbines with more stages. Copyright © 2011 by ASME.

Integration of double-fluorescence expression vectors into zebrafish genome for the selection of site-directed knockout/knockin

Production of zebrafish by modifying endogenous growth hormone (GH) gene through homologous recombination is described here. We first constructed the targeting vectors pGHT1.7k and pGHT2.8k, which were used for the knockout/knockin of the endogenous GH gene of zebrafish, and injected these two vectors into the embryos of zebrafish. Overall, the rate of targeted integration with the characteristic of germ line transmission in zebrafish was 1.7x10(-6). In one experimental patch, the integrating efficiency of pGHT2.8k was higher than that of pGHT1.7k, but the lethal effect of pGHT2.8k was stronger than that of pGHT1.7k. The clones with the correct integration of target genes were identified by a simple screening procedure based on green fluorescent protein (GFP) and RFP dual selection, which corresponded to homologous recombination and random insertion, respectively. The potential homologous recombination zebrafish was further bred to produce a heterozygous F-1 generation, selected based on the presence of GFP. The potential targeted integration of exogenous GH genes into a zebrafish genome at the P-0 generation was further verified by polymerase chain reaction and Southern blot analysis. Approximately 2.5% of potential founder knockout and knockin zebrafish had the characteristic of germ line transmission. In this study, we developed an efficient method for producing the targeted gene modification in zebrafish for future studies on genetic modifications and gene functions using this model organism.

Carbonization process of Si(100) by ion-beam bombardment

The evolution of carbonization process on Si as a function of ion dose has been carried out by mass-selected ion-beam deposition technique. 3C-SiC layer has been obtained at low ion dose, which has been observed by reflection high energy electron diffraction and X-ray photoelectron spectroscopy (XPS). The chemical states of Si and carbon have also been examined as a function of ion dose by XPS. Carbon enrichment was found regardless of the used ion dose here, which may be due to the high deposition rate. The formation mechanism of SiC has also been discussed based on the subplantation process. The work will also provide further understanding of the ion-bombardment effect. (C) 2001 Published by Elsevier Science B.V.

Growing process of CdS nanoclusters in zeolite Y studied by positron annihilation

Zeolite Y has been used as the host to generate CdS nanoclusters. The location of CdS nanoclusters inside zeolite hosts was confirmed by the blue-shifted reflection absorption spectra with respect to that of bulk CdS materials. But which kind of cage inside zeolite Y, sodalite cage or supercage, was preferred for the CdS clusters remained unclear. In this paper, we conducted positron annihilation spectroscopy (PAS) measurements for the first time on a series of CdS/Y zeolite samples and concluded that CdS clusters were not located in supercages but in smaller sodalite cages. The stability of CdS clusters inside the sodalite units was due to the coordination of Cd atoms with the framework oxygen atoms of the double six-ring windows. Moreover, PAS revealed some important information of surface states existing on the interfacial layers between CdS clusters and zeolite Y. (C) 2001 Elsevier Science B,V, All rights reserved.

Pienen kiinteistösijoitusyhtiön kasvustrategia

Tämän pro gradu-tutkielman tarkoituksena oli tutkia minkälaisia kasvupyrkimyksiä Suomessa toimivilla pienillä kiinteistösijoittajilla tai kiinteistösijoitusyhtiöillä on. Tutkimuksen pohjaksi esiteltiin yrityksen strategiateoriaa ja kasvun malleja pienyritysnäkökulmasta. Tutkimuksen tulokset voivat antaa yrittäjille mietteitä kasvamisen suunnitelmallisuudesta ja sen hyödyistä. Tutkimusosuus suoritettiin laadullisena tutkimuksena. Aineisto kerättiin haastattelemalla 16 pientä kiinteistösijoittajaa nettipohjaisen kyselyn avulla. Painopiste oli vapaissa vastauksissa ja tällä pyrittiin saamaan laajoja mielipiteitä. Kohdeyritykset valittiin sattumalta tutkijan lähipiiriin kuuluvien yrittäjien avulla. Maantieteellinen jakauma oli laaja, koko maan kattava. Kohdeyrityksistä haastateltiin yhtä henkilöä, joka oli tyypillisesti yrityksen omistaja. Haastatteluista saatua materiaalia analysoitiin strategisten näkemysten ja yrityksen kasvuteorioiden valossa. Tutkimuksessa todettiin, että pienyrittäjät suhtautuvat kiinteistösijoittamiseen lähinnä säästämismuotona eikä niinkään systemaattisena yrittämisenä. Useat vastaajat tekivät kiinteistösijoittamista osa-aikaisesti. Kasvua tavoittelee kyllä valtaosa yrityksistä, mutta sen eteen ei tehdä juuri mitään. Odotellaan vain sopivia kohteita ostettavaksi. Kasvamisen määrä riippuu hyvin pitkälti yrittäjän persoonasta. Jos yrittäjä on kunnianhimoinen toiminnan kasvattaja, niin se heijastuu myös hänen harjoittamaan kiinteistösijoittamiseen.

Testing Mean-Variance Efficiency in CAPM with Possibly Non-Gaussian Errors : An Exact Simulation-Based Approach

In this paper we propose exact likelihood-based mean-variance efficiency tests of the market portfolio in the context of Capital Asset Pricing Model (CAPM), allowing for a wide class of error distributions which include normality as a special case. These tests are developed in the frame-work of multivariate linear regressions (MLR). It is well known however that despite their simple statistical structure, standard asymptotically justified MLR-based tests are unreliable. In financial econometrics, exact tests have been proposed for a few specific hypotheses [Jobson and Korkie (Journal of Financial Economics, 1982), MacKinlay (Journal of Financial Economics, 1987), Gib-bons, Ross and Shanken (Econometrica, 1989), Zhou (Journal of Finance 1993)], most of which depend on normality. For the gaussian model, our tests correspond to Gibbons, Ross and Shanken’s mean-variance efficiency tests. In non-gaussian contexts, we reconsider mean-variance efficiency tests allowing for multivariate Student-t and gaussian mixture errors. Our framework allows to cast more evidence on whether the normality assumption is too restrictive when testing the CAPM. We also propose exact multivariate diagnostic checks (including tests for multivariate GARCH and mul-tivariate generalization of the well known variance ratio tests) and goodness of fit tests as well as a set estimate for the intervening nuisance parameters. Our results [over five-year subperiods] show the following: (i) multivariate normality is rejected in most subperiods, (ii) residual checks reveal no significant departures from the multivariate i.i.d. assumption, and (iii) mean-variance efficiency tests of the market portfolio is not rejected as frequently once it is allowed for the possibility of non-normal errors.

Reliability Estimation of Open Source Software based Computational Systems

Software systems are progressively being deployed in many facets of human life. The implication of the failure of such systems, has an assorted impact on its customers. The fundamental aspect that supports a software system, is focus on quality. Reliability describes the ability of the system to function under specified environment for a specified period of time and is used to objectively measure the quality. Evaluation of reliability of a computing system involves computation of hardware and software reliability. Most of the earlier works were given focus on software reliability with no consideration for hardware parts or vice versa. However, a complete estimation of reliability of a computing system requires these two elements to be considered together, and thus demands a combined approach. The present work focuses on this and presents a model for evaluating the reliability of a computing system. The method involves identifying the failure data for hardware components, software components and building a model based on it, to predict the reliability. To develop such a model, focus is given to the systems based on Open Source Software, since there is an increasing trend towards its use and only a few studies were reported on the modeling and measurement of the reliability of such products. The present work includes a thorough study on the role of Free and Open Source Software, evaluation of reliability growth models, and is trying to present an integrated model for the prediction of reliability of a computational system. The developed model has been compared with existing models and its usefulness of is being discussed.

Confianza inversionista. Inversión extranjera directa en Colombia. Periodo 2002–2010

Desde el surgimiento de las doctrinas económicas sobre el crecimiento endógeno, se ha determinado que la inversión extranjera es un factor que contribuye al crecimiento económico, ya que facilita la transferencia de tecnología y conocimientos en técnicas de producción, de mercadeo y de gestión en mercado extranjeras donde la competencia permite la existencia de incrementos en la productividad de los factores. Hacia el año 2000 la política de IED en Colombia, contemplaba unas políticas de gobierno centradas en la paz, reformas estructurales y promoción a las exportaciones. Dadas estas condiciones, los retos concernientes a aumentar la inversión extranjera eran bastante exigentes al momento de iniciar el periodo de gobierno de Álvaro Uribe Vélez (2002 – 2010), razón por la cual el objetivo de esta investigación es analizar los resultados al finalizar los dos periodos consecutivos de mandato del Presidente Uribe. Durante su gobierno, el Presidente Uribe Vélez, logró que la inversión extranjera directa alcanzara un notable incremento en sectores específicos como el minero y el petrolero, acompañando el proceso de crecimiento económico, sin embargo, este crecimiento no figura generalizado y contrariamente los índices de desempleo se incrementaron y las utilidades generadas se convierten en remesas al exterior conllevando baja reinversión en el país y estancamiento de otros sectores. Centraré la investigación en las situaciones inicial y final del periodo presidencial, en los aspectos concernientes a los niveles de inversión captados en Colombia, los sectores más favorecidos con dicha inversión, el origen de los recursos y la relación que estos flujos han tenido en los resultados de indicadores de crecimiento económico, productividad, competitividad, empleo y reinversión de utilidades.

Salud y crecimiento económico: un modelo de generaciones traslapadas, expectativa de vida endógena y capital humano

Este trabajo desarrolla un modelo de generaciones traslapadas con expectativa de vida endógena y capital humano. Recoge parte de la evidencia empírica acerca de la transición demográfica explicada por Notestein en 1945, donde variaciones en la longevidad de los individuos afectan positivamente el crecimiento económico de un país. El modelo establece que la falta de incentivos para invertir en salud estanca a una economía en una trampa de pobreza y muestra que incrementos en la productividad en el sector de producción de capital humano, al igual que cambios tecnológicos sesgados al uso intensivo del mismo, incrementan el producto de estado estacionario y pueden sacar a una economía de una trampa de pobreza.

Seasons, savings and GDP

The industrial revolution and the subsequent industrialization of the economies occurred Orst in temperate regions. We argue that this and the associated positive correlation between absolute latitude and GDP per capita is due to the fact that countries located far from the equator suffered more profound seasonal auctuations in climate, namely stronger and longer winters. We propose a growth model of biased innovations that accounts for these facts and show that countries located in temperate regions were more likely to create or adopt capital intensive modes of production. The intuition behind this result is that savings are used to smooth consumption; therefore, in places where output auctuations are more profound, savings are bigger. Because the incentives to innovate depend on the relative supply factors, economies where savings are bigger are more likely to create or adopt capital intensive technologies.

Biased technological change, human capital and factor shares

We propose a one-good model where technological change is factor saving and costly. We consider a production function with two reproducible factors: physical capital and human capital, and one not reproducible factor. The main predictions of the model are the following: (a) The elasticity of output with respect to the reproducible factors depends on the factor abundance of the economies. (b) The income share of reproducible factors increases with the stage of development. (c) Depending on the initial conditions, in some economies the production function converges to AK, while in other economies long-run growth is zero. (d) The share of human factors (raw labor and human capital) converges to a positive number lower than one. Along the transition it may decrease, increase or remain constant.