Study of Pinna nobilis growth from inner record: How biased are posterior adductor muscle scars estimates?

Previous studies have shown that the external growth records of the posterior adductor muscle scar (PAMS) of the bivalve Pinna nobilis are incomplete and do not produce accurate age estimations. We have developed a new methodology to study age and growth using the inner record of the PAMS, which avoids the necessity of costly in situ shell measurements or isotopic studies. Using the inner record we identified the positions of PAMS previously obscured by nacre and estimated the number of missing records in adult specimens with strong abrasion of the calcite layer in the anterior portion of the shell. The study of the PAMS and inner record of two shells that were 6 years old when collected showed that only 2 and 3 PAMS were observed, while 6 inner records could be counted, thus confirming our working methodology. Growth parameters of a P. nobilis population located in Moraira, Spain (western Mediterranean) were estimated with the new methodology and compared to those obtained using PAMS data and in situ measurements. For the comparisons, we applied different models considering the data alternatively as length-at-age (LA) and tag-recapture (TR). Among every method we tested to fit the Von Bertalanffy growth model, we observed that LA data from inner record fitted to the model using non-linear mixed effects and the estimation of missing records using the calcite width was the most appropriate. The equation obtained with this method, L = 573*(1 - e(-0.16(t-0.02))), is very similar to that calculated previously from in situ measurements for the same population.

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans

Genome-wide association studies (GWAS) have identified numerous common prostate cancer (PrCa) susceptibility loci. We have fine-mapped 64 GWAS regions known at the conclusion of the iCOGS study using large-scale genotyping and imputation in 25 723 PrCa cases and 26 274 controls of European ancestry. We detected evidence for multiple independent signals at 16 regions, 12 of which contained additional newly identified significant associations. A single signal comprising a spectrum of correlated variation was observed at 39 regions; 35 of which are now described by a novel more significantly associated lead SNP, while the originally reported variant remained as the lead SNP only in 4 regions. We also confirmed two association signals in Europeans that had been previously reported only in East-Asian GWAS. Based on statistical evidence and linkage disequilibrium (LD) structure, we have curated and narrowed down the list of the most likely candidate causal variants for each region. Functional annotation using data from ENCODE filtered for PrCa cell lines and eQTL analysis demonstrated significant enrichment for overlap with bio-features within this set. By incorporating the novel risk variants identified here alongside the refined data for existing association signals, we estimate that these loci now explain ∼38.9% of the familial relative risk of PrCa, an 8.9% improvement over the previously reported GWAS tag SNPs. This suggests that a significant fraction of the heritability of PrCa may have been hidden during the discovery phase of GWAS, in particular due to the presence of multiple independent signals within the same region.

Portrait of Louis Gottschalk, Julia Rothschild, Henriette Rothschild und Jenny Rothschild looking at photo album.

From left to right: Julia Rothschild, Henriette Rothschild, Jenny Rothschild; Louis Gottschalk stanting

Terapia homeopatica con Nosode en el control de mastitis bovina en Finca Santa Ana, municipio de Paiwas de la RAAS, Nicaragua

El presente trabajo se realizó en la finca Santa Ana Ana ubicada en las coordenadas de latitud Norte de 12º 47’longitud Oeste de 85º 07’y una altitud aproximada de 145.88 msnm en el Municipio de Paiwas, Departamento de la RAAS. Con el objetivo de evaluar un tratamiento homeopático (nosode de leche–mastitis-CH 7)contra mastitis bovina la cual es normalmente atendida por antibióticos, durante el trabajo de investigación se aplicaron tres tratamientos: I aplicación pliegue ano caudal, II aplicación sublingual y III tratamiento testigo con masticilina. Se seleccionaron 30 vacas con mastitis dividiéndolos en tres grupos de 10 cada uno donde las hembras se encontraban entre dos y tres meses de lactancia. Se encontró diferencia altamente significativa (P<0.01) para las variables fecha y vacas, y significativa (P<0.05), para las variables tratamiento y cuartos afectados. En los tratamientos el que controló mejor las afecciones en menos tiempo fue el químico, seguido del nosode de aplicación ano caudal, y el de menor control el nosode de aplicación sublingual, aunque este no difirió significativamente del nosode de aplicación ano caudal El cuarto que presentó la mayor afectación fue el cuarto trasero derecho (64%) seguido del cuarto delantero derecho (61%), el delantero izquierdo presentó la menor afectación con 49%, y el trasero izquierdo un porcentaje de afectación intermedia de 53%.

Validación de diferentes opciones de manejo para el control de la roya del café (Hemileia vastatrix B y Br.) en la finca Santa Ana, El Mombacho, Nicaragua

El presente trabajo tuvo como objetivo buscar nuevas alternativas de manejo para el control de la roya del café (Hemileia vastatrix B & BR.) con el uso de Bacillus thuringiensis Berliner (Bt) y oxicloruro de cobre, como complemento al manejo de la sombra, para buscar como disminuir la incidencia de la roya y determinar el mejor momento para la aplicación tomando en cuenta los porcentajes de ésta enfermedad. Para ello se escogió la finca Santa Ana ubicada en el cerro Mombacho (Nicaragua) a 750 metros sobre el nivel del mar. De junio de 1994 a febrero de 1995 se realizaron quincenalmente muestreos aleatorios por conglomerados para roya, mancha de hierro (Cercospora coffeicola B & CK.) y antracnosis (Colletotrichum sp), así como se registraron todas las labores de manejo que realizó el productor. Se establecieron 4 opciones: 2 con cobre: una en forma calendarizado y otra con 10 por ciento de incidencia acumulada, una tercera opc1on usando Bt y por último una parcela testigo. Con los datos obtenidos se elaboraron curvas de incidencia simple y acumulada. Las proporciones de incidencia fueron transformadas a monolitos y lógitos para la realización de regresión simple y poder calcular la velocidad de crecimiento de la epidemia, se calculó el área bajo la curva de la epidemia y las X máximas alcanzadas, se realizaron análisis de varianza para establecer diferencias estadísticas entre los tratamientos y las repeticiones. De manera general la epidemia de roya se hace evidente en agosto y septiembre manteniéndose siempre en aumento, alcanzando los máximos valores en enero y febrero. De los tratamientos en estudio podemos decir que las aplicaciones de cobre calendarizado y con 10 por ciento de incidencia acumulada, presentaron la menor incidencia para la epidemia de roya, sin embargo en el cobre de aplicación calendarizada el efecto de cobre se observa mejor por lo que presenta el mejor comportamiento. En el caso de Bt no se logró determinar su efecto a nivel de campo, a la dosis empleada y en el momento aplicado, su comportamiento fue similar al testigo, quien presentó los mayores porcentajes de acumulados. Para el caso de mancha de hierro se observó una menor incidencia bajo el efecto de aplicaciones calendarizadas. La epidemia de antracnosis no se consideró un problema grave, debido a que los acumulados finales no sobre pasaron el nivel considerado riesgoso (15 por ciento).

Dinámica poblacional de arvenses en el cultivo del pipian (Cucurbita pepo L.) producido bajo un sistema de manejo orgánico y un sistema de manejo convencional, en Tipitapa, Masaya 2007

Actualmente, el manejo de arvenses en las Cucurbitaceae es a base de herbicidas, repercutiendo en serios problemas al ambiente y al hombr e. En la finca experimental El Plantel, ubicado en el km 43 ½ carretera Tipitapa – Masaya, se estableció un estudio con el objetivo de conocer la dinámica poblacional de arvenses y su incidencia en el cultivo de pipián Cucurbita pepo L; producido bajo dos sistemas de manejo. Se evaluó un sistema convencional con el uso de Completo (12 - 30 - 10) 522.98 Kg/Ha, Urea 190.06 Kg/Ha, y un sistema orgánico con el uso Humus 10,886.95Kg/Ha, Compost: 21,900.62Kg/Ha, Biofertilizante: 14,765.21 Kg/Ha En una área 525m2, en tres parcelas de 80.5 m2, alternando con el pipián, el caupí. ( Vigna unguiculata . (L) Walp). En la diversidad se encontraron 13 especies en el sistema orgánico, predominando Tithonia rotundifolia (Mill) Blake, Boerhavia erecta L., Sorghum halepense (L) P e rs. Y 10 familias, entre ellas, Portulacaceae, Asteraceae, Nyctaginaceae, y Cyperaceae. Y en el sistema convencional 11 especies, predominando, Ixophorus unicetus (Presl), Sorghum halepense (L) P ers, Tithonia rotundifolia (Mill) Blake, y 9 familias, sobres alieron Poaceae, Portulacaceae, Asteraceae, y Nyctaginaceae. El porcentaje de cobertura en los dos sistemas de manejo se presento similar. La biomasa por familia, especie y cultivo, fue mayor en el sistema orgánico. El rendimiento del cultivo no reflejo di ferencia significativa entre los dos sistemas de manejo evaluados. Los resultados demostraron que presencia de arvenses no afectó el desarrollo y crecimiento del cultivo. El manejo orgánico puede verse como una alternativa viable para el productor y para l a conservación del ambiente, a pesar de ser este un corto ciclo, este manejo muestra que a futuro se pueden obtenerse mejores resultados

Diagnóstico del estado nutricional de los suelos en los Sistemas productivos de café (Coffea arabica L.), maíz (Zea mays L.) y frijol (Phaseolus vulgaris L.), en la comunidad de Santa Julia, El Crucero, Managua, 2014

Uno de los parámetros de mayor importancia en la agricultura es el estado nutricional del suelo, así como el manejo por parte de los agricultores. A través del programa para el Desarrollo Participativo Integral Rural (DEPARTIR), en la comunidad de Santa Julia, municipio de El Crucero, departamento de Managua, Se realizó un muestreo de suelo, a una profundidad de 20 cm en un total de 34 lotes productivos de 17 unidades productivas, dedicadas a la producción de café, maíz y frijol. Se utilizó análisis univariado (ANDEVA, DMS) y multivariado, análisis de correspondencia. Basado en los resultados, la disponibilidad de elementos mayores (N-P-K), así como (Mg, Ca, MO, CO, pH), algunos factores que condicionan el uso del suelo. Los resultados demostraron que el 95% de las unidades productivas estudiadas tienen dimensiones menores a las 10.5 hectáreas, siendo el café el cultivo predominante. La aplicación de fertilizantes químicos fue una práctica generalizada en todas las unidades productivas para los tres cultivos estudiados. Los muestreos efectuados en las parcelas donde se estableció el maíz fueron homogéneos a lo interno y externo de las unidades productivas. En el sistema café las variantes de contenido en los diferentes muestreos, en las unidades productivas fueron considerables, esto obedece al manejo que cada agricultor realiza en sus plantaciones,similares resultados se obtuvieron en el rubro frijol. Al 0 correlacionar el manejo con la disponibilidad de elementos minerales en el suelo se encontró, que el tamaño de las áreas de siembra, tiene una alta relación con la aplicación de fertilizantes químicos, así mismo el aumento en las áreas de siembra, está en dependencia del destino de la producción.

Identification of a biomarker panel for colorectal cancer diagnosis

Background: Malignancies arising in the large bowel cause the second largest number of deaths from cancer in the Western World. Despite progresses made during the last decades, colorectal cancer remains one of the most frequent and deadly neoplasias in the western countries. Methods: A genomic study of human colorectal cancer has been carried out on a total of 31 tumoral samples, corresponding to different stages of the disease, and 33 non-tumoral samples. The study was carried out by hybridisation of the tumour samples against a reference pool of non-tumoral samples using Agilent Human 1A 60- mer oligo microarrays. The results obtained were validated by qRT-PCR. In the subsequent bioinformatics analysis, gene networks by means of Bayesian classifiers, variable selection and bootstrap resampling were built. The consensus among all the induced models produced a hierarchy of dependences and, thus, of variables. Results: After an exhaustive process of pre-processing to ensure data quality–lost values imputation, probes quality, data smoothing and intraclass variability filtering–the final dataset comprised a total of 8, 104 probes. Next, a supervised classification approach and data analysis was carried out to obtain the most relevant genes. Two of them are directly involved in cancer progression and in particular in colorectal cancer. Finally, a supervised classifier was induced to classify new unseen samples. Conclusions: We have developed a tentative model for the diagnosis of colorectal cancer based on a biomarker panel. Our results indicate that the gene profile described herein can discriminate between non-cancerous and cancerous samples with 94.45% accuracy using different supervised classifiers (AUC values in the range of 0.997 and 0.955).

Coastal and marine protected areas in Mexico

This study on marine protected areas (MPAs) in Mexico relies on a variety of data sources as well as the authors’ longstanding field experience, particularly in the Yucatan Peninsula, to analyze the design, establishment and operation of protected areas. It discusses two case studies of MPAs in detail and summarizes the findings from four others, focusing primarily on the role played by local communities in managing coastal and marine resources. The study also draws on the perspective of key informants, namely, Mexican experts on coastal and ocean management issues, including government officials, decisionmakers, researchers, members of non governmental organizations (NGOs), and consultants. (97 pp.)

Proceedings of the Eighteenth International Sea Turtle Symposium, 3-7 March 1998, Mazatlán, Sinaloa, Mexico

For the first time in its history, the International Symposium on Sea Turtle Biology and Conservation migrated to a site outside of the United States. Thus the Eighteenth edition was hosted by the Mazatlán Research Unit of the Instituto de Ciencias del Mar y Limnología of the Mexican National Autonomous University (UNAM) in Mazatlán, Sinaloa (Mexico) where it was held from 3-7, March, 1998. Above all, our symposium is prominent for its dynamism and enthusiasm in bringing together specialists from the world´s sea turtle populations. In an effort to extend this philosophy, and fully aware of how fast the interest in sea turtles has grown, the organizers paid special attention to bring together as many people as possible. With the tremendous efforts of the Travel Committee and coupled with a special interest by the Latin American region´s devotees, we managed to get 653 participants from 43 countries. The number of presentations increased significantly too, reaching a total of 265 papers, ranging from cutting-edge scientific reports based on highly sophisticated methods, to the experiences and successes of community-based and environmental education programs. A priority given by this symposium was the support and encouragement for the construction of "bridges" across cultural and discipline barriers. We found success in achieving a multinational dialogue among interest groups- scientists, resource managers, decision makers, ngo's, private industry. There was a broad representation of the broad interests that stretch across these sectors, yet everyone was able to listen and offer their own best contribution towards the central theme of the Symposium: the conservation of sea turtles and the diversity of marine and coastal environments in which they develop through their complicated and protracted life cycle. Our multidisciplinary approach is highly important at the present, finding ourselves at a cross roads of significant initiatives in the international arena of environmental law, where the conservation of sea turtles has a key role to play. Many, many people worked hard over the previous 12 months, to make the symposium a success. Our sincerest thanks to all of them: Program committee: Laura Sarti (chair), Ana Barragán, Rod Mast, Heather Kalb, Jim Spotilla, Richard Reina, Sheryan Epperly, Anna Bass, Steve Morreale, Milani Chaloupka, Robert Van Dam, Lew Ehrhart, J. Nichols, David Godfrey, Larry Herbst, René Márquez, Jack Musick, Peter Dutton, Patricia Huerta, Arturo Juárez, Debora Garcia, Carlos Suárez, German Ramírez, Raquel Briseño, Alberto Abreu; Registration and Secretary: Jane Provancha (chair), Lupita Polanco; Informatics: Germán Ramírez, Carlos Suárez; Cover art: Blas Nayar; Designs: Germán Ramírez, Raquel Briseño, Alberto Abreu. Auction: Rod Mast; Workshops and special meetings: Selina Heppell; Student prizes: Anders Rhodin; Resolutions committee: Juan Carlos Cantú; Local organizing committee: Raquel Briseño, Jane Abreu; Posters: Daniel Ríos and Jeffrey Semminoff; Travel committee: Karen Eckert (chair), Marydele Donnelly, Brendan Godley, Annette Broderick, Jack Frazier; Student travel: Francisco Silva and J. Nichols; Vendors: Tom McFarland and J. Nichols; Volunteer coordination: Richard Byles; Latin American Reunión: Angeles Cruz Morelos; Nominations committee: Randall Arauz, Colleen Coogan, Laura Sarti, Donna Shaver, Frank Paladino. Once again, Ed Drane worked his usual magic with the Treasury of the Symposium Significant financial contributions were generously provided by government agencies. SEMARNAP (Mexico´s Ministry of Environment, Natural Resources and Fisheries) through its central office, the Mazatlán Regional Fisheries Research Center (CRIP-Mazatlán) and the National Center for Education and Capacity Building for Sustainable Development (CECADESU) contributed to the logistics and covered the costs of auditoria and audiovisual equipment for the Symposium, teachers and their hotels for the Community Development and Environmental Education workshop in the 5th Latin American Sea Turtle Specialists; DIF (Dept of Family Affairs) provided free accomodation and food for the more than 100 participants in the Latin American Reunion. In this Reunion, the British Council-Mexico sponsored the workshop on the Project Cycle. The National Chamber of the Fisheries Industry (CANAINPES) kindly sponsored the Symposium´s coffee breaks. Personnel from the local Navy (Octave Zona Naval) provided invaluable aid in transport and logistics. The Scientific Coordination Office from UNAM (CICUNAM) and the Latin American Biology Network (RELAB) also provided funding. Our most sincere recognition to all of them. In the name of this Symposium´s compilers, I would like to also express our gratitude to Wayne Witzell, Technical Editor for his guidance and insights and to Jack Frazier for his help in translating and correcting the English of contributions from some non-native English speakers. Many thanks to Angel Fiscal and Tere Martin who helped with the typing in the last, last corrections and editions for these Proceedings. To all, from around the world, who generously helped make the 18th Symposium a huge success, shared their experiences and listened to ours, our deepest gratitude! (PDF contains 316 pages)

Candida albicans Increases Tumor Cell Adhesion to Endothelial Cells In Vitro: Intraspecific Differences and Importance of the Mannose Receptor

The dimorphic fungus Candida albicans is able to trigger a cytokine-mediated pro-inflammatory response that increases tumor cell adhesion to hepatic endothelium and metastasis. To check the intraspecific differences in this effect, we used an in vitro murine model of hepatic response against C. albicans, which made clear that tumor cells adhered more to endothelium incubated with blastoconidia, both live and killed, than germ tubes. This finding was related to the higher carbohydrate/protein ratio found in blastoconidia. In fact, destruction of mannose ligand residues on the cell surface by metaperiodate treatment significantly reduced tumor cell adhesion induced. Moreover, we also noticed that the effect of clinical strains was greater than that of the reference one. This finding could not be explained by the carbohydrate/protein data, but to explain these differences between strains, we analyzed the expression level of ten genes (ADH1, APE3, IDH2, ENO1, FBA1, ILV5, PDI1, PGK1, QCR2 and TUF1) that code for the proteins identified previously in a mannoprotein-enriched pro-metastatic fraction of C. albicans. The results corroborated that their expression was higher in clinical strains than the reference one. To confirm the importance of the mannoprotein fraction, we also demonstrate that blocking the mannose receptor decreases the effect of C. albicans and its mannoproteins, inhibiting IL-18 synthesis and tumor cell adhesion increase by around 60%. These findings could be the first step towards a new treatment for solid organ cancers based on the role of the mannose receptor in C. albicans-induced tumor progression and metastasis.

Cambios oceanográficos y climáticos en el sur del golfo de Vizcaya durante el Cuaternario final, detectados por medio de los foraminíferos y ostrácodos

La microfauna bentónica y planctónica se ha convertido en una herramienta precisa de detección de las variaciones paleoceanográficas y paleoclimáticas. La combinación de grupos faunísticos diferentes, cuya respuesta ante los mismos factores ecológicos puede ser diversa, permite analizar de manera aún más concreta los cambios oceanográficos y climáticos en la misma área de estudio. Así mismo, el estudio de las asociaciones microfaunísticas con técnicas isotópicas y sedimentológicas, posibilitan la determinación del grado de afectación de los parámetros ecológicos considerados en las especies identificadas. La comparación de las variaciones específicas detectadas en el pasado con la distribución de dichas asociaciones en los modelos actuales, permite caracterizar los cambios pretéritos del medio que habitaban estos organismos. El presente trabajo está estructurado en dos bloques principales: por un lado, se estudia la microfauna (foraminíferos bentónicos, planctónicos y ostrácodos) en muestras superficiales de la plataforma, con el objetivo de determinar los parámetros ecológicos que controlan su distribución a lo largo del área de estudio. Por otra parte, se analizan 5 sondeos obtenidos a diferente profundidad, que permiten definir las variaciones oceanográficas y climáticas acontecidas en la plataforma Vasca a finales del Cuaternario, basándonos en los cambios de las asociaciones de microfauna que se suceden a lo largo de los sondeos. Estas variaciones faunísticas denotan, por tanto, cambios ambientales.

Plasma brain-derived neurotrophic factor levels, learning capacity and cognition in patients with first episode psychosis

Background: Cognitive impairments are seen in first psychotic episode (FEP) patients. The neurobiological underpinnings that might underlie these changes remain unknown. The aim of this study is to investigate whether Brain Derived Neurotrophic Factor (BDNF) levels are associated with cognitive impairment in FEP patients compared with healthy controls. Methods: 45 FEP patients and 45 healthy controls matched by age, gender and educational level were selected from the Basque Country area of Spain. Plasma BDNF levels were assessed in healthy controls and in patients. A battery of cognitive tests was applied to both groups, with the patients being assessed at 6 months after the acute episode and only in those with a clinical response to treatment. Results: Plasma BDNF levels were altered in patients compared with the control group. In FEP patients, we observed a positive association between BDNF levels at six months and five cognitive domains (learning ability,immediate and delayed memory, abstract thinking and processing speed) which persisted after controlling for medications prescribed, drug use, intelligence quotient (IQ) and negative symptoms. In the healthy control group, BDNF levels were not associated with cognitive test scores. Conclusion: Our results suggest that BDNF is associated with the cognitive impairment seen after a FEP. Further investigations of the role of this neurotrophin in the symptoms associated with psychosis onset are warranted.

Cannabis use and involuntary admission may mediate long-term adherence in first-episode psychosis patients: a prospective longitudinal study

Background: This study aimed to examine factors associated with treatment adherence in first-episode psychosis (FEP) patients followed up over 8 years, especially involuntary first admission and stopping cannabis use. Methods: This prospective, longitudinal study of FEP patients collected data on symptoms, adherence, functioning,and substance use. Adherence to treatment was the main outcome variable and was categorized as ‘good’ or ‘bad’. Cannabis use during follow-up was stratified as continued use, stopped use, and never used. Bivariate and logistic regression models identified factors significantly associated with adherence and changes in adherence over the 8-year follow-up period. Results: Of the 98 FEP patients analyzed at baseline, 57.1% had involuntary first admission, 74.4% bad adherence,and 52% cannabis use. Good adherence at baseline was associated with Global Assessment of Functioning score (p = 0.019), Hamilton Depression Rating Scale score (p = 0.017) and voluntary admission (p < 0.001). Adherence patterns over 8 years included: 43.4% patients always bad, 26.1% always good, 25% improved from bad to good. Among the improved adherence group, 95.7% had involuntary first admission and 38.9% stopped cannabis use. In the subgroup of patients with bad adherence at baseline, involuntary first admission and quitting cannabis use during follow up were associated with improved adherence. Conclusions: The long-term association between treatment adherence and type of first admission and cannabis use in FEP patients suggest targets for intervention to improve clinical outcomes.

Ictiólogos de la Argentina: Ana Luisa Thormählen.

This series will include all those people who, by means of their contributions, great and small, played a part in the consolidation of ichthyology in Argentina. The general plan of this work consists of individual factsheets containing a list of works by each author, along with reference bibliography and, whenever possible, personal pictures and additional material. The datasheets will be published primarily in chronological order, although this is subject to change by the availability of materials for successive editions. This work represents another approach for the recovery and revalorization of those who set the foundations of Argentine ichthyology while in diverse historical circumstances. I expect this to be the beginning of a major work that achieves the description of such a significant part of the history of natural sciences in Argentina. (PDF has 30 pages.)