‘From the ‘roads to freedom’ to the ‘roads of humanism’? Sartre and his literary alter ego Mathieu in Les Chemins de la liberté (1938-1949)’

War and Memory international conference- Poetics after ’45,
QUB, Belfast, June 2008

Mutations within subdomain II of the extracellular region of epidermal growth factor receptor selectively alter TGF alpha binding

The interactions of epidermal growth factor (EGF) and transforming growth factor alpha (TGF alpha) with the epidermal growth factor receptor (EGFR) were examined by insertion mutagenesis of the receptor. Seventeen insertions were made throughout a construct containing only the extracellular domain. This truncated receptor (sEGFR) was secreted and had a dissociation constant similar to that of the full-length solubilized receptor. Receptors with insertions within subdomain III were not secreted. Two receptors with insertions at positions 291 and 474, which border subdomain III, have significantly decreased binding to both EGF and TGF alpha relative to wild type. This confirms previous work demonstrating that subdomain III forms the primary binding site for EGF and TGF alpha. Four of the mutants within subdomain II had a decreased binding to TGF alpha relative to wild type, but had wild type binding to EGF. These results suggest that a region within subdomain II may selectively regulate the binding of TGF alpha. Two receptors which contained insertions within subdomains II and IV, approximately equidistant from the center of subdomain III, bound twofold more ligand molecules than wild type receptor, with an affinity similar to that of wild type receptor. These findings suggest that insertion at these positions allows the access of more than one ligand molecule to the binding site.

Hydroclimatic shifts in northeast Thailand during the last two millennia - the record of Lake Pa Kho

The Southeast Asian mainland is located in the central path of the Asian summer monsoon, a region where paleoclimatic data are still sparse. Here we present a multi-proxy (TOC, C/N, δ¹³C, biogenic silica, and XRF elemental data) study of a 1.5m sediment/peat sequence from Lake Pa Kho, northeast Thailand, which is supported by 20 AMS ¹⁴C ages. Hydroclimatic reconstructions for Pa Kho suggest a strengthened summer monsoon between BC 170-AD 370, AD 800-960, and after AD 1450; and a weakening of the summer monsoon between AD 370-800, and AD 1300-1450. Increased run-off and a higher nutrient supply after AD 1700 can be linked to agricultural intensification and land-use changes in the region. This study fills an important gap in data coverage with respect to summer monsoon variability over Southeast Asia during the past 2000 years and enables the mean position of the Intertropical Convergence Zone (ITCZ) to be inferred based on comparisons with other regional studies. Intervals of strengthened/weaker summer monsoon rainfall suggest that the mean position of the ITCZ was located as far north as 35°N between BC 170-AD 370 and AD 800-960, whereas it likely did not reach above 17°N during the drought intervals of AD 370-800 and AD 1300-1450. The spatial pattern of rainfall variation seems to have changed after AD 1450, when the inferred moisture history for Pa Kho indicates a more southerly location of the mean position of the summer ITCZ.

Changes in the acoustic environment alter the foraging and sheltering behaviour of the cichlid Amititlania nigrofasciata

Anthropogenic noise can affect behaviour across a wide range of species in both terrestrial and aquatic environments. However, behaviours might not be affected in isolation. Therefore, a more holistic approach investigating how environmental stressors, such as noise pollution, affect different behaviours in concert is necessary. Using tank-based noise exposure experiments, we tested how changes in the acoustic environment affect the behaviour of the cichlid Amatitlania nigrofasciata. We found that exposure to anthropogenic noise affected a couple of behaviours: an increase in sheltering was accompanied by a decrease in foraging. Our results highlight the multiple negative effects of an environmental stressor on an individual's behaviour.

Pupil constriction can alter the accuracy of dark room provocative test.

BACKGROUND: Primary angle-closure glaucoma (PACG) is a major cause of visual morbidity in East Asia. Dark-room provocative test (DRPT) has been used to determine which narrow angles have the risk to develop angle closure. However, the accuracy of DRPT might be altered because that after emerging from the dark room, the configuration of the angle is affected by the light of the slit-lamp and the appositionally closed angle reopens. The aim of this study was to examine the pupillary diameter in different light conditions and use it as a parameter to assess the accuracy of dark-room provocative test. METHODS: Patients with suspected primary angle-closure glaucoma undergoing DRPT were recruited. The anterior chamber angle was examined by anterior segment optical coherence tomography under the following conditions: (1) in standard room illumination; (2) after short-term dark-adaptation and (3) after DRPT. Mean values of pupil size and numbers of appositionally closed angle under different conditions were compared. RESULTS: A total of 47 eyes of 47 patients were analyzed. The pupil size after DRPT was smaller than that after short-term dark-adaptation (P < 0.001) and smaller than that in standard room illumination (P = 0.026). The numbers of appositionally closed angles after short-term dark-adaptation were significantly larger than those after DRPT (P < 0.001). There was no significant difference between the numbers of appositionally closed angles in standard room illumination and after DRPT (P = 0.157). CONCLUSIONS: Constriction of pupil size immediately after prolonged dark room provocative test may lead to change in the angle configuration, which may lead to false negative results. We suggest a modified protocol of recording intraocular pressure immediately after DRPT and performing gonioscopy following short-term dark adaptation to improve the accuracy of angle closure assessment.

Low-pathogenicity Mycoplasma spp. alter human monocyte and macrophage function and are highly prevalent among patients with ventilator-acquired pneumonia

Background
Ventilator-acquired pneumonia (VAP) remains a significant problem within intensive care units (ICUs). There is a growing recognition of the impact of critical-illness-induced immunoparesis on the pathogenesis of VAP, but the mechanisms remain incompletely understood. We hypothesised that, because of limitations in their routine detection, Mycoplasmataceae are more prevalent among patients with VAP than previously recognised, and that these organisms potentially impair immune cell function.
Methods and setting
159 patients were recruited from 12 UK ICUs. All patients had suspected VAP and underwent bronchoscopy and bronchoalveolar lavage (BAL). VAP was defined as growth of organisms at >104 colony forming units per ml of BAL fluid on conventional culture. Samples were tested for Mycoplasmataceae (Mycoplasma and Ureaplasma spp.) by PCR, and positive samples underwent sequencing for speciation. 36 healthy donors underwent BAL for comparison. Additionally, healthy donor monocytes and macrophages were exposed to Mycoplasma salivarium and their ability to respond to lipopolysaccharide and undertake phagocytosis was assessed.

Results
Mycoplasmataceaewerefoundin49%(95%CI 33% to 65%) of patients with VAP, compared with 14% (95% CI 9% to 25%) of patients without VAP. Patients with sterile BAL fluid had a similar prevalence to healthy donor BAL fluid (10% (95% CI 4% to 20%) vs 8% (95% CI 2% to 22%)). The most common organism identified was M. salivarium. Blood monocytes from healthy volunteers incubated with M. salivarium displayed an impaired TNF-α response to lipopolysaccharide ( p=0.0003), as did monocyte-derived macrophages (MDMs) (p=0.024). MDM exposed to M. salivarium demonstrated impaired phagocytosis ( p=0.005).

Discussion and conclusions
This study demonstrates a high prevalence of Mycoplasmataceae among patients with VAP, with a markedly lower prevalence among patients with suspected VAP in whom subsequent cultures refuted the diagnosis. The most common organism found, M. salivarium, is able to alter the functions of key immune cells. Mycoplasmataceae may contribute to VAP pathogenesis.

Codon ambiguities as a mechanism to alter the genetic code in Saccharomyces cerevisiae

Although the genetic code is generally viewed as immutable, alterations to its standard form occur in the three domains of life. A remarkable alteration to the standard genetic code occurs in many fungi of the Saccharomycotina CTG clade where the Leucine CUG codon has been reassigned to Serine by a novel transfer RNA (Ser-tRNACAG). The host laboratory made a major breakthrough by reversing this atypical genetic code alteration in the human pathogen Candida albicans using a combination of tRNA engineering, gene recombination and forced evolution. These results raised the hypothesis that synthetic codon ambiguities combined with experimental evolution may release codons from their frozen state. In this thesis we tested this hypothesis using S. cerevisiae as a model system. We generated ambiguity at specific codons in a two-step approach, involving deletion of tRNA genes followed by expression of non-cognate tRNAs that are able to compensate the deleted tRNA. Driven by the notion that rare codons are more susceptible to reassignment than those that are frequently used, we used two deletion strains where there is no cognate tRNA to decode the rare CUC-Leu codon and AGG-Arg codon. We exploited the vulnerability of the latter by engineering mutant tRNAs that misincorporate Ser at these sites. These recombinant strains were evolved over time using experimental evolution. Although there was a strong negative impact on the growth rate of strains expressing mutant tRNAs at high level, such expression at low level had little effect on cell fitness. We found that not only codon ambiguity, but also destabilization of the endogenous tRNA pool has a strong negative impact in growth rate. After evolution, strains expressing the mutant tRNA at high level recovered significantly in several growth parameters, showing that these strains adapt and exhibit higher tolerance to codon ambiguity. A fluorescent reporter system allowing the monitoring of Ser misincorporation showed that serine was indeed incorporated and possibly codon reassignment was achieved. Beside the overall negative consequences of codon ambiguity, we demonstrated that codons that tolerate the loss of their cognate tRNA can also tolerate high Ser misincorporation. This raises the hypothesis that these codons can be reassigned to standard and eventually to new amino acids for the production of proteins with novel properties, contributing to the field of synthetic biology and biotechnology.

Discussions sur les genres des québécoises de la génération X parlent d'autofiction au féminin

Ce mémoire porte sur la réception, par des lectrices de la génération X, de cinq oeuvres autofictionnelles écrites par les auteures québécoises Marie-Sissi Labrèche ( Borderline 2000 et La brèche 2003), Nelly Arcan (Putain 2001 et Folle 2004) et Mélikah Abdelmoumen (Le dégoût du bonheur 2001), lesquelles appartiennent à cette même génération. Leurs récits ont suscité un certain engouement public et obtenu un écho considérable dans la sphère médiatique et dans le milieu de la recherche universitaire. Les observateurs notent, de façon générale, que les narratrices autodiégétiques, alter ego des auteures, sont brutalement imparfaites, névrosées, mal dans leur peau, sexuellement soumises, assujetties aux désirs des hommes, et qu'elles ne parviennent pas à s'épanouir comme êtres humains, mais surtout, comme femmes. D'une part, les héroïnes rompent avec les représentations largement véhiculées dans les médias et dans la littérature québécoise contemporaine. D'autre part, leur profil correspond aux discours populaires sur la génération X, fréquemment qualifiée de génération sacrifiée, désabusée. Ma recherche, exploratoire, se fonde sur quatre approches théoriques : théorie des genres littéraires, théories de la réception, études féministes et gender studies, sociologie des générations. J'ai tenu cinq entretiens collectifs auprès de seize Québécoises de la génération X. J'ai réuni ces lectrices, qui s'étaient d'elles-mêmes intéressées aux récits, en petits groupe [i.e. groupes] de trois ou quatre participantes. Le compte-rendu et l'analyse de leurs discussions m'ont permis d'observer la portée sociale des récits éminemment personnels de Labrèche, d'Arcan et d'Abdelmoumen. Une interrogation m'a habitée du début à la fin de ma démarche : pourquoi et comment ces récits"parlent-ils", intellectuellement et émotionnellement, aux lectrices de la génération X? Je dégage de mon analyse quelques hypothèses interprétatives. D'abord, les lectrices ont du mal à distinguer les auteures et les narratrices. Elles tendent à appréhender les récits autofictionnels comme des autobiographies et elles procèdent à une lecture littérale des oeuvres. Ensuite, plus de la moitié des lectrices s'identifient, à différents degrés, aux narratrices. Comme ces dernières, les participantes à ma recherche affirment qu'elles ressentent une certaine pression sociale liée aux normes de beauté et de féminité et à l'hypersexualisation de l'espace public. En cela, leurs positions se rapprochent de celles du courant féministe radical. Cependant, les lectrices refusent d'être cantonnées dans un rôle de victime. Elles reprochent aux narratrices de s'autodétruire. Les femmes doivent, selon les participantes, se responsabiliser et se montrer critiques envers les modèles qui leur sont offerts. Enfin, les lectrices reconnaissent dans les héroïnes certains traits associés à la génération X. Elles attribuent en partie la souffrance des narratrices au contexte social dans lequel ces dernières évoluent. Mais elles estiment que cette souffrance est surtout tributaire de carences familiales. Les discussions des lectrices reflètent en quelque sorte leur propre appartenance à la génération X. Ainsi, l'importance qu'elles accordent à la sphère privée, par rapport à la sphère publique, constitue une des particularités des X qui ressort clairement des entretiens. Par ailleurs, leurs observations sont teintées d'un certain individualisme. Bref, à la lumière de mes résultats, je conclus que les récits autofictionnels de Marie-Sissi Labrèche, de Nelly Arcan et de Mélikah Abdelmoumen ont une certaine portée sociale, mais que leur écho résonne davantage sur le plan individuel, chez les lectrices qui s'identifient personnellement aux narratrices. Cela dit, les participantes semblent toutes avoir été portées à se questionner et à réfléchir, pendant et après leur lecture, sur l'identité féminine dans la société actuelle.

Letter, Lancaster City, PA, to sister, Chesterfield, SC, c. 1800

This letter is from Allie Grafft to her sister.

Interactivity and identification: alter ego and conversation piece

In this presentation I discuss two recent works that use new technologies to explore the expression or communication of individual human identity.

Produtividade de grãos de cultivares de feijão-caupi, [Vigna unguiculata (L.) Walp], no município de Capitão Poço, PA.

2016