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Thesis submitted in Trinity Term 2001 for the degree of Master of Philosophy, Worcester College, Oxford

Dengue em Portugal – Experiência da Região Autónoma da Madeira

Introdução: O dengue é uma doença viral, autolimitada, transmitida pelo mosquito do género Aedes. A introdução do vetor de transmissão na ilha da Madeira levantou a ameaça de uma epidemia. Apesar da implementação de medidas de controlo do vetor, oito anos após a sua deteção verificou-se o primeiro surto de dengue na região. Este estudo teve como objetivo a caracterização dos casos de dengue em idade pediátrica no primeiro surto desta doença na Madeira. Métodos: Estudo retrospetivo, observacional e descritivo. Foram incluídas crianças e adolescentes dos zero aos catorze anos com diagnóstico de dengue confirmado laboratorialmente. Foi feita a caracterização das variáveis demográficas, clínicas e analíticas, com posterior análise e tratamento estatístico. Resultados: Foram confirmados laboratorialmente 182 casos, verificando-se predomínio do sexo masculino e idade média de 9,6 anos. A taxa de incidência foi de 413,5/100000 habitantes, com pico de incidência em novembro de 2012. Os sintomas de apresentação mais frequentes foram febre (98,3%), cefaleias (75,2%), mialgias (66,5%) e exantema (51,6%), surgindo manifestações hemorrágicas em 9,9% dos casos. A taxa de internamento foi de 15,9%, com duração média de 3,8 dias, não sendo registados óbitos. Foi identificado somente o serotipo DEN-1. Conclusões: A elevada densidade do vetor associada à presença de hospedeiros suscetíveis poderá ter originado a explosão do surto, após a introdução do vírus na região. Sendo a imunidade serotipo-específica, a presença de um novo serotipo poderia ter consequências devastadoras, pelo que dada a possibilidade de um novo surto, deverão ser mantidas as medidas de controlo entomológico e de proteção individual.

Evaluation of air lime and clayish earth mortars for earthen wall renders

CIAV2013 – International Conference on Vernacular Architecture, 7º ATP, VerSus, 16-20 october 2013

Prevalência de parasitoses intestinais na cidade de Eirunepé, Amazonas

Foram analisadas, pelo método de sedimentação espontânea, amostras de fezes de 413 pacientes e encontrada positividade em 266 (64,4%) dos seguintes parasitas: Ascaris lumbricoides (35,6%); Trichuris trichiura (18,6%); Ancilostomídeos(9,9%), Strongyloides stercoralis (1%), Enterobius vermiculares (0,5%), e Entamoeba histolytica (13,3%) e Giardia lamblia (1%).

A Problemática da Erosão Costeira: O Caso Específico da Praia do Pedrógão

Ao longo das últimas décadas, tem-se verificado uma crescente ocupação populacional e urbanística, em paralelo com a concentração de diversas actividades económicas, ao longo das zonas costeiras. Neste sentido, torna-se fulcral o desenvolvimento de políticas de gestão integrada destes ecossistemas naturais, dada a sua grande vulnerabilidade, no que respeita aos usos e ocupação do solo. Como resultado de acções naturais e do Homem (na sua grande maioria), a erosão estabelece-se como o principal problema que assola as zonas costeiras, em Portugal. Neste sentido, as Tecnologias de Informação Geográfica, em especial os Sistemas de Informação Geográfica, conferem-se como importantes ferramentas, tanto na monitorização do litoral, como no apoio aos processos de tomada de decisão. A presente dissertação detém, como principal objectivo, demonstrar as mais-valias dos SIG no estudo das zonas costeiras, especialmente na área da prevenção. Tendo como área de estudo a praia do Pedrógão, em Leiria, considerando o período temporal 1947 – 2014 (1947-1983; 1983-2003; 2003-2007; 2007-2012; 2012-2014), propõe-se: estabelecer uma base cartográfica que analise, espacialmente, o comportamento da linha da costa face à gradual erosão; quantificar as taxas de erosão/acreção e, por fim, proceder à delimitação de faixas de perigo, em paralelo com a análise dos resultados previamente conseguidos, assim como da topografia do local em análise. Para o troço costeiro seleccionado, é de constatar que existe, efectivamente, um recuo da linha da costa, especialmente na praia Sul (Praia dos Campistas), onde se regista o maior recuo médio anual (-17.72m, entre 2012-2014). Na praia Norte, as v taxas anuais variam entre os -0.64m (1947-1983) e os -15.07m (2012-2014), tendo apresentado valores de acreção, com excepção para o intervalo de tempo mais recente. É certo que as recargas de areia, iniciadas em 2011, procuram minimizar os impactos da erosão, o que pode condicionar os resultados obtidos. Por outro lado, no que respeita às faixas de perigo, é certo que, com o recuar da costa, há uma tendência da frente urbana aproximar-se do nível de “perigo muito elevado”. Nesse sentido, a grande maioria do edificado situa-se na faixa de perigo moderado (211 edifícios), constatando-se que outra grande parte (193 edifícios) não se encontre ameaçado. De um total de 413 edifícios, apenas 1 encontra-se em perigo elevado. Mantendo-se esta tendência de recuo da costa e tendo por base o trabalho de campo efectuado, estima-se que os valores apresentados venham a alterar-se, isto é, tanto a população local, como o edificado tendem a aproximar-se do perigo máximo/elevado.

Phlebotomine sandflies (Diptera: Psychodidae) in Governador Valadares, a transmission area for American tegumentary leishmaniasis in State of Minas Gerais, Brazil

INTRODUCTION: A study on the phlebotomine sandfly fauna was carried out in an endemic area for American tegumentary leishmaniasis in the municipality of Governador Valadares, in the State of Minas Gerais, Brazil. METHODS: Captures were undertaken using HP light traps in four districts, on three nights per month, for one year (from January to December 2008). Correlations between climatic factors (temperature, relative air humidity and rainfall) and the numbers of sandflies collected was observed. RESULTS: 5,413 phlebotomine specimens were caught and were identified as belonging to 12 species. Of these specimens, 2,851 (52%) were females and 2,562 (48%) were males. CONCLUSIONS: Lutzomyia intermedia predominated (29.9% of the species caught), thus suggesting that they were responsible for transmission of American tegumentary leishmaniasis, together with L. whitmani, which was also found in the area (4.3%). The presence of L. longipalpis (11.9%), the main vector for visceral leishmaniasis in Brazil, is an important finding, which makes rigorous entomological surveillance of the area necessary.

The effectiveness of a rotavirus vaccine in preventing hospitalizations and deaths presumably due to acute infectious diarrhea in Brazilian children: a quasi-experimental study

INTRODUCTION: Rotavirus is the main etiologic agent of acute infectious diarrhea in children worldwide. Considering that a rotavirus vaccine (G1P8, strain RIX4414) was added to the Brazilian vaccination schedule in 2006, we aimed to study its effectiveness and safety regarding intestinal intussusception. METHODS: A quasi-experimental trial was performed in which the primary outcome was the number of hospitalizations that were presumably due to acute infectious diarrhea per 100,000 children at risk (0-4 years old). The secondary outcomes included mortality due to acute infectious diarrhea and the intestinal intussusception rates in children in the same age range. We analyzed three scenarios: Health Division XIII of the State of São Paulo (DRS XIII) from 2002 to 2008, the State of São Paulo, and Brazil from 2002 to 2012. RESULTS: The averages of the hospitalization rates for 100,000 children in the pre- and post-vaccination periods were 1,413 and 959, respectively, for DRS XIII (RR=0.67), 312 and 249, respectively, for the State of São Paulo (RR=0.79), and 718 and 576, respectively, for Brazil (RR=0.8). The mortality rate per 100,000 children in the pre- and post-vaccination periods was 2.0 and 1.3, respectively, for DRS XIII (RR=0.66), 5.5 and 2.5, respectively, for the State of São Paulo (RR=0.47), and 15.0 and 8.0, respectively, for Brazil (RR=0.53). The average annual rates of intussusception for 100,000 children in DRS XIII were 28.0 and 22.0 (RR=0.77) in the pre- and post-vaccination periods, respectively. CONCLUSIONS: A monovalent rotavirus vaccine was demonstrated to be effective in preventing the hospitalizations and deaths of children that were presumably due to acute infectious diarrhea, without increasing the risk of intestinal intussusception.

Evaluation of the reference value for the Montenegro skin test

Abstract:INTRODUCTION:The Montenegro skin test (MST) has good clinical applicability and low cost for the diagnosis of American tegumentary leishmaniasis (ATL). However, no studies have validated the reference value (5mm) typically used to discriminate positive and negative results. We investigated MST results and evaluated its performance using different cut-off points.METHODS:The results of laboratory tests for 4,256 patients with suspected ATL were analyzed, and 1,182 individuals were found to fulfill the established criteria. Two groups were formed. The positive cutaneous leishmaniasis (PCL) group included patients with skin lesions and positive direct search for parasites (DS) results. The negative cutaneous leishmaniasis (NCL) group included patients with skin lesions with evolution up to 2 months, negative DS results, and negative indirect immunofluorescence assay results who were residents of urban areas that were reported to be probable sites of infection at domiciles and peridomiciles.RESULTS:The PCL and NCL groups included 769 and 413 individuals, respectively. The mean ± standard deviation MST in the PCL group was 12.62 ± 5.91mm [95% confidence interval (CI): 12.20-13.04], and that in the NCL group was 1.43 ± 2.17mm (95% CI: 1.23-1.63). Receiver-operating characteristic curve analysis indicated 97.4% sensitivity and 93.9% specificity for a cut-off of 5mm and 95.8% sensitivity and 97.1% specificity for a cut-off of 6mm.CONCLUSIONS:Either 5mm or 6mm could be used as the cut-off value for diagnosing ATL, as both values had high sensitivity and specificity.

Da intercepção de comunicações, acções encobertas e serviços de informações

The Portuguese Intelligence Services have their operational skills limited due to the grievances caused by the Dictatorship and, in particular, by its political police. With the help of historical elements, and by analyzing current legislation, we demonstrate that such grievances are today unjustified and misplaced, mainly taking into account the Risk Society’s multifaceted threats. Also part of our analysis is the impugnment of the Constitutional Court’s decision nº 413/2015, which pronounced unconstitutional the norm contained in Decree nº 426/XII, of the Republic’s Assembly, article nº 78, nº2, which intended to allow Intelligence Services access to the so-called “metadata”, as well as to tax and banking information. It is our understanding, and we demonstrate it in our dissertation, that should be allowed the access of, not only the above mentioned information, but also the means known as communications interception and undercover operations to the Intelligence Services, as long as properly supervised and inspected.

Avaliação do desempenho das políticas de gestão e proteção do litoral continental português

Esta dissertação teve como objectivo principal desenvolver indicadores que sejam ao mesmo tempo abrangentes e diferenciadores das especificidades locais existentes na orla costeira do continente português com base na informação de base disponível e assim evidenciar a importância desta abordagem no apoio à gestão integrada das zonas costeiras tal como preconizado pelas Recomendações Europeias sobre GIZC de 2002 (Recomendações 2002/413/CE, 2002). Em Portugal, é no litoral que se encontra a maior parte da sua população, assim como recursos e atividades económicas estratégicas para o interesse nacional, pelo que a disponibilização de dados, que permitam rápidas leituras em diversos domínios sobre o litoral, assumem aspectos de enorme importância em diversas vertentes que importam a um efetivo desenvolvimento que se deseja sustentável e que vão desde o apoio à gestão do ponto de vista técnico e administrativo, no suporte a decisões políticas e no apoio a sectores produtivos. Esta dissertação resulta de um estágio de 7 meses na Agência Portuguesa do Ambiente onde foi efectuado um tratamento da informação em ambiente SIG após uma recolha dos dados de base disponíveis que, embora não tenha sido exaustiva, abrange um conjunto de indicadores muito representativos da realidade costeira e que vai desde os tradicionais censos do INE de 2011 até à sua combinação com dados geográficos. O trabalho teve como ponto de partida o trabalho desenvolvido no âmbito do projeto europeu SUSTAIN, que é um projeto que pretendeu avaliar e promover políticas locais de sustentabilidade das zonas costeiras, mas onde os indicadores referentes à caracterização do risco costeiro dominaram face às recomendações resultantes do Grupo de Trabalho do Litoral criado ao abrigo do despacho n.º 6574/2014, de 20 de maio. A dissertação teve ainda como objetivo secundário a inserção dos indicadores em sistemas de informação baseados em informação geográfica de forma a poderem ter uma ampla divulgação, sendo exemplo a plataforma colaborativa SIARL - Sistema de Administração do Recurso Litoral, que possui um campo próprio para implementação de indicadores deste tipo (www.siarl.igeo.pt) e que tem como objetivo principal ser uma ferramenta de apoio à decisão e que facilite a troca de experiências e o acesso à informação institucional. A análise efetuada no âmbito desta dissertação vem em grande parte evidenciar as assimetrias já referenciadas por muitos especialistas que se debruçaram sobre estas matérias, designadamente em termos de usos do solo, de risco ou demográficos, permitindo definir rumos claros quanto à política de dados a desenvolver pelas entidades responsáveis pela sua produção tendo em vista obterem-se indicadores que visem favorecer a gestão integrada das zonas costeiras.

Acellular Gellan-gum based bilayered structures for the regeneration of osteochondral defects: a preclinical study

 In orthopaedics, the management and treatment of osteochondral (OC) defects remains an ongoing clinical challenge. Autologous osteochondral mosaicplasty has been used as a valid option for OC treatments although donor site morbidity remains a source of concern [1]. Engineering a whole structure capable of mimicking different tissues (cartilage and subchondral bone) in an integrated manner could be a possible approach to regenerate OC defects. In our group we have been proposing the use of bilayered structures to regenerate osteochondral defects [2,3]. The present study aims to investigate the pre-clinical performance of bilayered hydrogels and spongy-like hydrogels in in vivo  models (mice and rabbit, respectively), in both subcutaneous and orthotopic models. The bilayered structures were produced from Low Acyl Gellan Gum (LAGG) from Sigma-Aldrich, USA. Cartilage-like layers were obtained from a 2wt% LAGG solution. The bone-like layers were made of 2wt% LAGG with incorporation of hydroxyapatite at 20% and 30% (w/v). Hydrogels and spongy-like were subcutaneouly implanted in mice to evaluate the inflammatory response. Then, OC defects were induced in rabbit knee to create a critical size defect (4 mm diameter and 5 mm depth), and then hydrogels and sponges implanted. Both structures followed different processing methods. The hydrogels were injected allowing in situ  crosslinking. Unlike, the spongy-like were pre-formed by freeze-drying. The studies concerning subcutaneous implantation and critical size OC defect were performed for 2 and 4 weeks time, respectively. Cellular behavior and inflammatory responses were assessed by means of histology staining and biochemical function and matrix deposition by immunohistochemistry. Additionally, both OC structures stability and new cartilage and bone formation were evaluated by using vivo- computed tomography (Scanco 80). The results showed no acute inflammatory response for both approaches. New tissue formation and integration in the adjacent tissues were also observed, which present different characteristic behaviors when comparing hydrogels and sponges response. As future insights, a novel strategy for regeneration of OC defects can be designed encompassing both, hydrogels and spongy-like structures and cellular approaches. References: 1. Espregueira-Mendes J. et al. Osteochondral transplantation using autografts from the upper tibio-fibular joint for the treatment of knee cartilage lesions. Knee Surgery, Sports Traumatology, Arthroscopy 20,1136, 2012. 2. Oliveira JM. et al, Novel hydroxyapatite/chitosan bilayered scaffold for osteochondral tissue-engineering applications: Scaffold design and its performance when seeded with goat bone marrow stromal cells. Biomaterials 27, 6123, 2006. 3. Pereira D R. et al. Gellan Gum-Based Hydrogel Bilayered Scaffolds for Osteochondral Tissue Engineering. Key Engineering Materials 587, 255, 2013.

Modulation of the secretome of hBMSCs by tailoring the macromolecular gradient in hydrogels to generate tissue-to-tissue interfaces

Tissue-to-tissue interfaces are commonly present in all tissues exhibiting structural, biological and chemical gradients serving a wide range of physiological functions. These interfaces are responsible for mediation of load transfer between two adjacent tissues. They are also important structures in sustaining the cellular communications to retain tissueâ s functional integration and homeostasis. [1] All cells have the capacity to sense and respond to physical and chemical stimulus and when cultured in three-dimensional (3D) environments they tend to perform their function better than in two-dimensional (2D) environments. Spatial and temporal 3D gradient hydrogels better resemble the natural environment of cells in mimicking their extracellular matrix. [2] In this study we hypothesize that differential functional properties can be engineered by modulation of macromolecule gradients in a cell seeded threedimensional hydrogel system. Specifically, differential paracrine secretory profiles can be engineered using human Bone Marrow Stem Cells (hBMSCâ s). Hence, the specific objectives of this study are to: assemble the macromolecular gradient hydrogels to evaluate the suitablity for hBMSCâ s encapsulation by cellular viability and biofunctionality by assessing the paracrine secretion of hBMSCâ s over time. The gradient hydrogels solutions were prepared by blend of macromolecules in one solution such as hyaluronic (HA) acid and collagen (Col) at different ratios. The gradient hydrogels were fabricated into cylindrical silicon moulds with higher ratio solutions assembled at the bottom of the mould and adding the two solutions consecutively on top of each other. The labelling of the macromolecules was performed to confirm the gradient through fluorescence microscopy. Additionally, AFM was conducted to assess the gradient hydrogels stiffness. Gradient hydrogels characterization was performed by HA and Col degradation assay, degree of crosslinking and stability. hBMSCâ s at P3 were encapsulated into each batch solution at 106 cells/ml solution and gradient hydrogels were produced as previously described. The hBMSCâ s were observed under confocal microscopy to assess viability by Live/Dead® staining. Cellular behaviour concerning proliferation and matrix deposition was also performed. Secretory cytokine measurement for pro-inflammatory and angiogenesis factors was carried out using ELISA. At genomic level, qPCR was carried out. The 3D gradient hydrogels platform made of different macromolecules showed to be a suitable environment for hBMSCâ s. The hBMSCâ s gradient hydrogels supported high cell survival and exhibited biofunctionality. Besides, the 3D gradient hydrogels demonstrated differentially secretion of pro-inflammatory and angiogenic factors by the encapsulated hBMSCâ s. References: 1. Mikos, AG. et al., Engineering complex tissues. Tissue Engineering 12,3307, 2006 2. Phillips, JE. et al., Proc Natl Acad Sci USA, 26:12170-5, 2008

Artificial thymus: a tissue engineering strategy

The thymus is the central organ responsible for the generation of T lymphocytes (1). Various diseases cause the thymus to produce in- sufficient T cells, which can lead to immune-suppression (2). Since T cells are essential for the protection against pathogens, it is crucial to promote de novo differentiation of T cells on diseased individuals. The available clinical solutions are: 1) one protocol involving the transplant of thymic stroma from unrelated children only applicable for athymic children (3); 2) for patients with severe peripheral T cell depletion and reduced thymic activity, the administration of stimu- lating molecules stimulating the activity of the endogenous thymus (4). A scaffold (CellFoam) was suggested to support thymus regen- eration in vivo (5), although this research was discontinued. Herein, we propose an innovative strategy to generate a bioartificial thymus. We use a polycaprolactone nanofiber mesh (PCL-NFM) seeded and cultured with human thymic epithelial cells (hTECs). The cells were obtained from infant thymus collected during pediatric cardio-tho- racic surgeries. We report new data on the isolation and characterization of those cells and their interaction with PCL-NFM, by expanding hTECs into relevant numbers and by optimizing cell seeding methods.

Inventário florestal a 100% em pequenas áreas sob manejo florestal madeireiro

O inventário é uma etapa básica do manejo florestal em que é avaliado a composição da floresta e a sua potencialidade para o manejo. O inventário a 100% tem o propósito de determinar o estoque de madeira existente para fins de planejamento da exploração. Este trabalho apresenta resultados de inventário florestal a 100% de um projeto de manejo florestal comunitário madeireiro conduzido pela Embrapa Acre em parceria com um grupo de produtores do Projeto de Colonização Pedro Peixoto, no estado Acre. A área total inventariada foi de 206,8 ha, composta por 57 talhões de tamanho médio de 3,6 ha cada um, correspondente a 48% da área total sob manejo de 12 pequenas propriedades. Foram abordadas todas as árvores com DAP ³ a 50,0 cm. Os resultados foram expressos, por espécie, por propriedade e para a área total em: número total de árvores (NT); abundância por hectare (AB); volume total (VT); volume por hectare (V); área basal total (ABsT); área basal por hectare (ABs); índice de importância da espécie (IND); e condição de aproveitamento da tora. Para a área total os resultados foram: NT = 3.518 árvores; AB = 17,01 árvores.ha-1; VT = 21.667,41 m³; V = 104,77 m³.ha-1; ABsT = 1.413,77 m²; e ABs = 6,84 m².ha-1. Foram reconhecidas em campo 204 espécies, pertencentes a 136 gêneros e a 43 famílias. Foi observado acentuada concentração dos dados dendrométricos em poucas espécies, pois somente cinco espécies respondem por um terço (33,6%) do IND total.

Centrality and rapidity dependence of inclusive jet production in sNN=5.02 TeV proton-lead collisions with the ATLAS detector

Measurements of the centrality and rapidity dependence of inclusive jet production in sNN−−−√=5.02 TeV proton--lead (p+Pb) collisions and the jet cross-section in s√=2.76 TeV proton--proton collisions are presented. These quantities are measured in datasets corresponding to an integrated luminosity of 27.8 nb−1 and 4.0 pb−1, respectively, recorded with the ATLAS detector at the Large Hadron Collider in 2013. The p+Pb collision centrality was characterised using the total transverse energy measured in the pseudorapidity interval −4.9<η<−3.2 in the direction of the lead beam. Results are presented for the double-differential per-collision yields as a function of jet rapidity and transverse momentum (pT) for minimum-bias and centrality-selected p+Pb collisions, and are compared to the jet rate from the geometric expectation. The total jet yield in minimum-bias events is slightly enhanced above the expectation in a pT-dependent manner but is consistent with the expectation within uncertainties. The ratios of jet spectra from different centrality selections show a strong modification of jet production at all pT at forward rapidities and for large pT at mid-rapidity, which manifests as a suppression of the jet yield in central events and an enhancement in peripheral events. These effects imply that the factorisation between hard and soft processes is violated at an unexpected level in proton--nucleus collisions. Furthermore, the modifications at forward rapidities are found to be a function of the total jet energy only, implying that the violations may have a simple dependence on the hard parton--parton kinematics.