Genetic Analysis of Tolerance to Rice Tungro Bacilliform Virus in Rice (Oryza sativa L.) Through Agroinoculation

Balimau Putih [an Indonesian cultivar tolerant to rice tungro bacilliform virus (RTBV)] was crossed with IR64 (RTBV, susceptible variety) to produce the three filial generations F1, F2 and F3. Agroinoculation was used to introduce RTBV into the test plants. RTBV tolerance was based on the RTBV level in plants by analysis of coat protein using enzyme-linked immunosorbent assay. The level of RTBV in cv. Balimau Putih was significantly lower than that of IR64 and the susceptible control, Taichung Native 1. Mean RTBV levels of the F1, F2 and F3 populations were comparable with one another and with the average of the parents. Results indicate that there was no dominance and an additive gene action may control the expression of tolerance to RTBV. Tolerance based on the level of RTBV coat protein was highly heritable (0.67) as estimated using the mean values of F3 lines, suggesting that selection for tolerance to RTBV can be performed in the early selfing generations using the technique employed in this study. The RTBV level had a negative correlation with plant height, but positive relationship with disease index value

Biolistic transformation of elite indica rice (Oryza sativa L.) cultivars through semi-solid and liquid medium selection systems

Following microprojectile mediated delivery of a plasmid construct (pAHC-25) encoding bar (bialophos resistance) gene into five-day-old scutellar calli derived from mature embryos, the effectiveness of selection procedure for bar-gene expressing tissue was compared for two indica rice cultivars (IR-64 and Karnal Local). While IR-64 transformants could be selected through the generally used semi-solid selection medium, the same procedure was not effective in the basmati cultivar Karnal Local. In the latter case, while lower concentrations (2–4 mg 1−1) of the selective agent phosphinothricin (PPT) yielded only escapes, higher concentrations (6–8 mg l−1) inhibited proliferation of transformed as well as untransformed sectors. For Karnal Local, a liquid medium based selection system was successfully utilized for recovering transformed sectors and, eventually, regenerants. The study demonstrates the generation of transformants of two elite indica cultivars using the environment-independent system of mature embryos from seeds.

Testing the simulation capability of APSIM-ORYZA under different levels of nitrogen fertiliser and transplanting time regimes in Korea

APSIM-ORYZA is a new functionality developed in the APSIM framework to simulate rice production while addressing management issues such as fertilisation and transplanting, which are particularly important in Korean agriculture. To validate the model for Korean rice varieties and field conditions, the measured yields and flowering times from three field experiments conducted by the Gyeonggi Agricultural Research and Extension Services (GARES) in Korea were compared against the simulated outputs for different management practices and rice varieties. Simulated yields of early-, mid- and mid-to-late-maturing varieties of rice grown in a continuous rice cropping system from 1997 to 2004 showed close agreement with the measured data. Similar results were also found for yields simulated under seven levels of nitrogen application. When different transplanting times were modelled, simulated flowering times ranged from within 3 days of the measured values for the early-maturing varieties, to up to 9 days after the measured dates for the mid- and especially mid-to-late-maturing varieties. This was associated with highly variable simulated yields which correlated poorly with the measured data. This suggests the need to accurately calibrate the photoperiod sensitivity parameters of the model for the photoperiod-sensitive rice varieties in Korea.

Responses of Super Rice (Oryza sativa L.) to Different Planting Methods for Grain Yield and Nitrogen-Use Efficiency in the Single Cropping Season

To break the yield ceiling of rice production, a super rice project was developed in 1996 to breed rice varieties with super high yield. A two-year experiment was conducted to evaluate yield and nitrogen (N)-use response of super rice to different planting methods in the single cropping season. A total of 17 rice varieties, including 13 super rice and four non-super checks (CK), were grown under three N levels [0 (N0), 150 (N150), and 225 (N225) kg ha−1] and two planting methods [transplanting (TP) and direct-seeding in wet conditions (WDS)]. Grain yield under WDS (7.69 t ha−1) was generally lower than TP (8.58 t ha−1). However, grain yield under different planting methods was affected by N rates as well as variety groups. In both years, there was no difference in grain yield between super and CK varieties at N150, irrespective of planting methods. However, grain yield difference was dramatic in japonica groups at N225, that is, there was an 11.3% and 14.1% average increase in super rice than in CK varieties in WDS and TP, respectively. This suggests that high N input contributes to narrowing the yield gap in super rice varieties, which also indicates that super rice was bred for high fertility conditions. In the japonica group, more N was accumulated in super rice than in CK at N225, but no difference was found between super and CK varieties at N0 and N150. Similar results were also found for N agronomic efficiency. The results suggest that super rice varieties have an advantage for N-use efficiency when high N is applied. The response of super rice was greater under TP than under WDS. The results suggest that the need to further improve agronomic and other management practices to achieve high yield and N-use efficiency for super rice varieties in WDS.

Ecological significance of rice (Oryza sativa) planting density and nitrogen rates in managing the growth and competitive ability of itchgrass (Rottboellia cochinchinensis) in direct-seeded rice systems

Current understanding is that high planting density has the potential to suppress weeds and crop-weed interactions can be exploited by adjusting fertilizer rates. We hypothesized that (a) high planting density can be used to suppress Rottboellia cochinchinensis growth and (b) rice competitiveness against this weed can be enhanced by increasing nitrogen (N) rates. We tested these hypotheses by growing R. cochinchinensis alone and in competition with four rice planting densities (0, 100, 200, and 400 plants m-2) at four N rates (0, 50, 100, and 150 kg ha-1). At 56 days after sowing (DAS), R. cochinchinensis plant height decreased by 27-50 %, tiller number by 55-76 %, leaf number by 68-84 %, leaf area by 70-83 %, leaf biomass by 26-90 %, and inflorescence biomass by 60-84 %, with rice densities ranging from 100 to 400 plants m-2. All these parameters increased with an increase in N rate. Without the addition of N, R. cochinchinensis plants were 174 % taller than rice; whereas, with added N, they were 233 % taller. Added N favored more weed biomass production relative to rice. R. cochinchinensis grew taller than rice (at all N rates) to avoid shade, which suggests that it is a "shade-avoiding" plant. R. cochinchinensis showed this ability to reduce the effect of rice interference through increased leaf weight ratio, specific stem length, and decreased root-shoot weight ratio. This weed is more responsive to N fertilizer than rice. Therefore, farmers should give special consideration to the application timing of N fertilizer when more N-responsive weeds are present in their field. Results suggest that the growth and seed production of R. cochinchinensis can be decreased considerably by increasing rice density to 400 plants m-2. There is a need to integrate different weed control measures to achieve complete control of this noxious weed.

Efficacy and phytotoxicity of different rates of oxadiargyl and pendimethalin in dry-seeded rice (Oryza sativa L.) in Bangladesh

A field study was established to evaluate oxadiargyl and pendimethalin during the wet seasons in Bangladesh in 2012 and 2013. The study evaluated the following treatments: oxadiargyl applied at 80, 120, and 160 g ai ha−1; pendimethalin at 800, 1200, and 1600 g ai ha−1; partial weedy; and weed-free. Rice plant density was greatly affected by weed control treatment. Lower density and lower uniformity of the rice plant stand occurred as a result of increased rates of herbicides. Increased rates of pendimethalin were more toxic than increased rates of oxadiargyl. Both herbicides effectively controlled Digitaria ciliaris, Echinochloa colona, and Phyllanthus niruri; however, they were unable to control Murdannia nudiflora. Oxadiargyl controlled Cyperus rotundus across rates by 31–55%, but pendimethalin was completely ineffective on it, and higher rates of both herbicides had no effect in controlling this weed. Both herbicides at higher rates reduced total weed biomass significantly. Among herbicide treatments, the highest yield (3.7–4.0 t ha−1) was recorded in plots treated with oxadiargyl at 160 g ai ha−1 and the lowest yield (2.4–2.8 t ha−1) was in plots treated with pendimethalin at 1600 g ai ha−1. Results from our study suggest that a higher rate of oxadiargyl can increase yield by suppressing weeds in dry-seeded rice systems. Similar to the results of oxadiargyl, pendimethalin at higher rates also greatly suppressed weeds; however, yield decreased due to phytotoxicity to rice seedlings.

Nitrogenase activity (acetylene reduction) associated with leaves of different cultivars of paddy (Oryza sativa L.)

An investigation was conducted to study the levels of nitrogen fixation on the leaf or sheath surfaces of four cultivars of paddy plants by using acetylene reduction technique. Varying levels of positive nitrogenase activity were observed on all the leaf surfaces. Sheath of IET 1991 cultivar showed a higher rate of fixation than the leaf surface. All the nitrogen-fixing organisms on the leaf or sheath surfaces belonged to the genus Beijerinckia. There was no correlation between the bacterial density and the level of fixation. Scanning electron microscopic data revealed that the upper surface of IET 1991 leaf was highly silicified and the microflora was either scanty or nil while the lower surface appeared quite different and harboured more micro-organisms. Similarly, the inner surface of sheath was devoid of silicification and showed the presence of micro-organisms.

Functional characterization of heat-shock protein 90 from Oryza sativa and crystal structure of its N-terminal domain

Heat-shock protein 90 (Hsp90) is an ATP-dependent molecular chaperone that is essential for the normal functioning of eukaryotic cells. It plays crucial roles in cell signalling, cell-cycle control and in maintaining proteome integrity and protein homeostasis. In plants, Hsp90s are required for normal plant growth and development. Hsp90s are observed to be upregulated in response to various abiotic and biotic stresses and are also involved in immune responses in plants. Although there are several studies elucidating the physiological role of Hsp90s in plants, their molecular mechanism of action is still unclear. In this study, biochemical characterization of an Hsp90 protein from rice (Oryza sativa; OsHsp90) has been performed and the crystal structure of its N-terminal domain (OsHsp90-NTD) was determined. The binding of OsHsp90 to its substrate ATP and the inhibitor 17-AAG was studied by fluorescence spectroscopy. The protein also exhibited a weak ATPase activity. The crystal structure of OsHsp90-NTD was solved in complex with the nonhydrolyzable ATP analogue AMPPCP at 3.1 angstrom resolution. The domain was crystallized by cross-seeding with crystals of the N-terminal domain of Hsp90 from Dictyostelium discoideum, which shares 70% sequence identity with OsHsp90-NTD. This is the second reported structure of a domain of Hsp90 from a plant source.

Fingerprinting environmental conditions and related stress using stable isotopic composition of rice (Oryza sativa L.) grain organic matter

Sea level rise (SLR) is a primary factor responsible for inundation of low-lying coastal regions across the world, which in turn governs the agricultural productivity. In this study, rice (Oryza sativa L.) cultivated seasonally in the Kuttanad Wetland, a SLR prone region on the southwest coast of India, were analysed for oxygen, hydrogen and carbon isotopic ratios (delta O-18, delta H-2 and delta C-13) to distinguish the seasonal environmental conditions prevalent during rice cultivation. The region receives high rainfall during the wet season which promotes large supply of fresh water to the local water bodies via the rivers. In contrast, during the dry season reduced river discharge favours sea water incursion which adversely affects the rice cultivation. The water for rice cultivation is derived from regional water bodies that are characterised by seasonal salinity variation which co-varies with the delta O-18 and delta H-2 values. Rice cultivated during the wet and the dry season bears the isotopic imprints of this water. We explored the utility of a mechanistic model to quantify the contribution of two prominent factors, namely relative humidity and source water composition in governing the seasonal variation in oxygen isotopic composition of rice grain OM. delta C-13 values of rice grain OM were used to deduce the stress level by estimating the intrinsic water use efficiency (WUEi) of the crop during the two seasons. 1.3 times higher WUE, was exhibited by the same genotype during the dry season. The approach can be extended to other low lying coastal agro-ecosystems to infer the growth conditions of cultivated crops and can further be utilised for retrieving paleo-environmental information from well preserved archaeological plant remains. (c) 2015 Elsevier Ltd. All rights reserved.

Estudio de tres líneas promisorias de arroz (Oryza sativa L.) en comparación con cinco variedades comerciales en condiciones de secano medianamente favorecido

El presente estudio se realizó en fincas de productores privados en tres localidades del departamento de Chinandega. El propósito fue evaluar tres líneas promisorias de Arroz en comparación con cinco variedades comerciales en condiciones de secano medianamente favorecido. El diseño experimental utilizado fue el de bloques completos al azar con tres repeticiones, utilizando una distancia entre surcos de 30 cm con siembra a chorrillo. En base a los resultados obtenidos se llegó a las conclusiones siguientes: el mejor material con respecto a características agronómicas, componentes de rendimiento y rendimiento agrícola fue Altamira-9; la línea CT-5754 es un material muy promisorio debido principalmente a su precocidad, característica muy importante para las zonas en que las precipitaciones son muy erráticas; En Ameya una de las localidades evaluadas, todos los materiales mostraron un mejor comportamiento.

Estudio de observación de ciento doce líneas de arroz (Oryza sativa L.) VIOAL-92, bajo ecosistema de riego en la localidad de Malacatoya

Con el objetivo de evaluar 112 líneas de Arroz de porte semienano, procedentes en su mayoría de Colombia, Vivero IRRI (IIRON), Argentina, Cuba y Perú, y utilizando como testigos internacionales las variedades CICA-8 y ORYZICA-1 y como testigos locales las variedades ALTAM1RA-9, ALTAM1RA-10 y CICA-8 también considerada como testigo local, se llevó a cabo un estudio en la "Finca Venllano", ubicada en Malacatoya, municipio del departamento de Granada, bajo el agroecosistema de riego. A cada línea se le evalúo las características agronómicas (floración, altura, desgrane, senescencia, exerción, acame y aceptabilidad fenotípica) y los componentes del rendimiento ( long de panícula, número de granos por panícula, porcentaje de fertilidad, peso de 1000 granos, rendimiento y rendimiento industrial ( % de arroz integral, % de arroz pulido y % de arroz oro). Se seleccionaron 15 líneas por sus características agronómicas y su potencial de rendimiento, lo que da un 13% de selección del material evaluado. La línea de mejor rendimiento fue la 113 (ECIA 561 con 5980 Kg/ha y la de menor rendimiento fue la línea 30 (CT9508-48-1-1P-2PT) con 3195 Kg/ha. El material de mejor calidad industrial fue la línea 10 (CT8837-1-17-1P-4) con 58.5 % de Arroz Oro y la línea más baja fue la 41 (CT7B05-17-4A-M-4P) con 48.0 % de Arroz Oro.

Evaluación de doce lineas y cuatro variedades de arroz (Oryza sativa L.) en comparación con cuatro testigos comerciales en condiciones de riego

El presente estudio se realizó en la Cooperativa Ornar Torrijos Herrera, localizada en el Valle de Sébaco, departamento de Matagalpa, con el objetivo de evaluar la adaptabilidad y comportamiento agronómico de doce líneas y cuatro variedades promisorias de arroz como prueba observacional de rendimiento, sembrándose en condiciones de riego, con el método de siembra a chorrillo. Para el presente estudio se tomó como parámetro el del Sistema de Evaluación Estandar del CIAT de Colombia evaluandose características como floración, altura de planta, acame, exerción, desgrane, senescencia, aceptabilidad fenotípica y la determinación del rendimiento y sus componentes. En base a los resultados obtenidos en las evaluaciones de las características agronómicas y componentes del rendimiento se seleccionaron 9 líneas A3046, A3047, A3048, A3050, A3051, A3052, A3055 A3057 y A3065 lo que da un total de 75 por ciento de selección del material evaluado. En el caso de las variedades se seleccionaron IR-64, IR-72, IR 59682 y PSBRC-10, equivalente a un 100 por ciento. La línea con rendimiento más alto fue A3047 con 7 272.73 kg/ha y la del menor rendimiento A3034 con 4 090.91 kglha. Respecto a las variedades la de mayor rendimeintofue IR-72 con 7 712.12 kglha y la de menor fue IR-64 con 5424.24 kglha. El material seleccionado se evaluará en una prueba preliminar y avanzada de rendimiento debido a que estos materiales se mantuvieron por encima de los 5 424.24 kglha y no se observaron enfermedades.

Efecto de tres niveles de nitrógeno en el cultivo de arroz (Oryza sativa L.), con cuatro variedades y una línea promisoria bajo el sistema de riego por inundación en la localidad de Malacatoya

El presente estudio se realizó en la Empresa Agropecuaria Las Lajas ubicada en el municipio de Malacatoya, departamento de Granada. El trabajo de campo estuvo comprendido entre el 19 de abril y 12 de octubre de 1996 con el propósito de evaluar el efecto de tres diferentes niveles de nitrógeno en el cultivo de arroz Oryza sativa L. con cuatro variedades y una línea promisoria bajo el sistema de riego por inundación. El diseño experimental utilizado fue el de bloques completos al azar (BCA) con 15 tratamientos y 3 repeticiones. Se evaluaron 8 variables entre las cuales se encuentran: altura, volcacimiento, longitud de panícula, panículas por metro cuadrado, número de granos por panícula, fertilidad de espiguillas, peso de 1000 granos y rendimiento. En base a los resultados obtenidos se llegó a las conclusiones siguientes: Para el ciclo de verano en la zona de Malacatoya el mejor material con respecto a las características agronómicas, componentes del rendimiento fue la variedad testigo Ocyzica llanos-4 con el primer y segundo nivel de nitrógeno equivalente a 74.2 y 89.1 kilogramos, de nitrógeno por hectárea respectivamente además esta variedad presentó el mejor rendimiento 5 412.59 kg/ha y 5 632.29 kg/ha y con ambos niveles no presentó vo1camiento, obteniendo escala 1 de volcamiento o acamene.

Efecto de tres niveles de nitrógeno en el cultivo de arroz (Oryza sativa L.) con cinco líneas promisorias en la localidad de Malacatoya, bajo el sistema de riego por inundación

El presente estudio se realizó en la Empresa Agropecuaria Las Lajas, en el municipio de Malacatoya, departamento de Granada. El propósito del ensayo fue evaluar el efecto de tres niveles de nitrógeno con cinco líneas promisorias de arroz bajo el sistema de riego por inundación. El trabajo de campo estuvo comprendido entre el 19 de abril y el 12 de agosto de 1996. Para dicho trabajo se utilizó el diseño experimental de bloques completos al azar (BCA), con 15 tratamientos y 3 repeticiones. Se evaluaron 8 variables: Altura, volcamiento, longitud de panícula, panículas por metro cuadrado, número de granos, fertilidad de espiguillas peso de 1000 granos, además del rendimiento. Como resultado de la evaluación en las características agronómicas, componentes del rendimiento y rendimiento agrícola se seleccionaron dos líneas con buen rendimiento y buenas características agronómicas. Estas fueron la línea 203 con el primer nivel de que corresponde a 74.2 kg/ha de nitrógeno y la línea IG-2282 con el tercer nivel equivalente a 104 kg/ha de nitrógeno, la línea 203 con 74.2 kg/ha de nitrógeno obtuvo escala 1 de volcamiento y la línea IG-2282 con 104 kg/ha de nitrógeno presentó escala 3 de volcamiento; escala de volcamiento aceptada comercialmente.