Analyse transcriptomique de l'interaction tripartite "Pseudozyma flocculosa-Blumeria graminis f.sp. hordei-Hordeum vulgare"

Afin d’améliorer nos pratiques agricoles dans le contexte d’une agriculture durable, plusieurs agents de lutte biologique (ALB) ont été développés, testés et sont maintenant utilisés dans le monde pour combattre les pertes de rendements causées par les maladies. Blumeria graminis f. sp. hordei ( Bgh) est l’agent pathogène responsable du blanc de l’orge et peut réduire les rendements de cette culture jusqu’à 40%. Un champignon épiphyte, Pseudozyma flocculosa, a été découvert et identifié en 1987 en association étroite avec le blanc du trèfle. Les chercheurs ont alors remarqué que ce champignon exhibait une forte activité antagoniste contre le blanc en détruisant les structures de l’agent pathogène. Suite à d’autres travaux, il est apparu que ce comportement antagoniste était dirigé contre tous les membres des Erysiphales et semblait lié à la synthèse d’un glycolipide antifongique soit la flocculosine. Toutefois, on n’est toujours pas parvenus à associer l’efficacité de l’ALB avec la production de ce glycolipide. Ces observations suggèrent que d’autres facteurs seraient impliqués lorsque les deux protagonistes, l’ALB et le blanc, sont en contact. L’objectif principal de ce projet était donc de chercher d’autres mécanismes moléculaires pouvant expliquer l’interaction P. flocculosa-blanc et orge, en faisant une analyse transcriptomique complète des trois protagonistes en même temps. L’interaction tripartite a été échantillonnée à différents temps suivant l’inoculation de P. flocculosa sur des feuilles d’orge présentant déjà une intensité de blanc d’environ 50%. Les échantillons de feuilles prélevés ont ensuite été utilisés pour l’extraction de l’ARN qui ont été ensuite transformés en ADNc pour la préparation des librairies. Cinq répliquats ont été effectués pour chaque temps et le tout a été séquencé à l’aide de séquençage par synthèse Illumina HiSeq. Les séquences obtenues (reads) ont ensuite été analysées à l’aide du logiciel CLC Genomics Workbench. Brièvement, les séquences obtenues ont été cartographiées sur les trois génomes de référence. Suite à la cartographie, les analyses d’expression ont été conduites et les gènes exprimés de façon différentielle ont été recherchés. Cette étape a été conduite en portant une attention particulière aux gènes codant pour un groupe de protéines appelées CSEP pour “candidate secreted effector proteins” qui seraient possiblement impliquées dans l’interaction tripartite. Parmi les protéines exprimées de façon différentielle en présence du blanc ou en absence de ce dernier, nous avons pu constater que certaines CSEP étaient fortement exprimées en présence du blanc. Ces résultats sont prometteurs et nous offrent une piste certaine pour l’élucidation des mécanismes impliqués dans cette interaction tripartite.

Molecular Characterization of the Oxalate Oxidase Involved in the Response of Barley to the Powdery Mildew Fungus1

Previously we reported that oxalate oxidase activity increases in extracts of barley (Hordeum vulgare) leaves in response to the powdery mildew fungus (Blumeria [syn. Erysiphe] graminis f.sp. hordei) and proposed this as a source of H2O2 during plant-pathogen interactions. In this paper we show that the N terminus of the major pathogen-response oxalate oxidase has a high degree of sequence identity to previously characterized germin-like oxalate oxidases. Two cDNAs were isolated, pHvOxOa, which represents this major enzyme, and pHvOxOb', representing a closely related enzyme. Our data suggest the presence of only two oxalate oxidase genes in the barley genome, i.e. a gene encoding HvOxOa, which possibly exists in several copies, and a single-copy gene encoding HvOxOb. The use of 3′ end gene-specific probes has allowed us to demonstrate that the HvOxOa transcript accumulates to 6 times the level of the HvOxOb transcript in response to the powdery mildew fungus. The transcripts were detected in both compatible and incompatible interactions with a similar accumulation pattern. The oxalate oxidase is found exclusively in the leaf mesophyll, where it is cell wall located. A model for a signal transduction pathway in which oxalate oxidase plays a central role is proposed for the regulation of the hypersensitive response.

Methyl jasmonate induced gene expression in wheat delays symptom development by the crown rot pathogen Fusarium pseudograminearum

The necrotrophic fungal pathogen Fusarium pseudograminearum (F. pseudograminearum) causes crown rot disease (CR) in wheat. This host-pathogen interaction has not been studied previously at the molecular level. In this study. using real-time quantitative PCR, the expression of 26 selected wheat genes was examined 1, 2 and 4 days after inoculation of wheat seedlings of the CR susceptible cultivar Kennedy and the partially field-resistant cultivar Sunco. Reproducible induction of eight defence genes consisting of PR1.1, PR2 (beta,1-3 glucanase), PR3 (chitinase), PR4 (wheativin), PR5 (thaumatin-like protein). TaPERO (peroxidase), PR10 and TaGLP2a (germin-like) was observed. These genes were induced in both cultivars, however. some genes were induced more rapidly in Sunco than in Kennedy. MJ treatment also induced the above pathogen responsive defence genes in both cultivars while benzo(1,2,3)thiadiazole-7-carbothionic acid S-methyl ester (BTH) treatment weakly induced them in Kennedy only. Similarly. treatment with MJ before inoculation significantly delayed the development of necrotic symptoms for 2 weeks in both wheat cultivars, while BTH pre-treatments delayed symptom development in Kennedy only. The chemically induced protection, therefore, correlated with induction of the F. pseudograminearum-responsive genes. These results support the emerging role of jasmonate signalling in defence against necrotrophic fungal pathogens in monocots and future manipulation of this pathway may improve CR resistance in wheat. (c) 2006 Elsevier Ltd. All rights reserved.

Studio genetico ed epidemiologico su Erysiphe necator agente eziologico dell'Oidio della vite

The objective was to analyse population structure and to determine genetic diversity of Erysiphe necator (syn. Uncinula necator) populations obtained from some vineyards located in the South-East Po valley (Italy). Powdery mildew is one of the most important fungal diseases of grapes (Vitis vinifera L.) throughout the world. The causal agent is the haploid, heterothallic ascomycete E. necator. It is an obligate biotrophic fungus and it can be found only on green organs of plants belonging to the family Vitaceae. For this pathogen, two sympatric populations (groups A and B) have been described in Europe and Australia. The two genetic groups differ at multiple genetic loci and previous studies reported a lack of interfertility among isolates of the two groups. There are now several well documented examples of plant pathogen species, such as Leptosphaeria maculans, Gaeumannomyces graminis var. tritici, Botrytis cinerea and Erysiphe syringae, which are indeed composed of genetically differentiated clades, that have led to the description of new groups or even new species. Several studies have suggested that genetic E. necator group A and B correlated with ecological features of the pathogen; some researchers proposed that group A isolates over-winter as resting mycelium within dormant buds, and in spring originate infected shoots, known as Flag shoots, while group B isolates would survive as ascospores in overwintering cleistothecia. However, the association between genetic groups and mode of over-wintering has been challenged by recent studies reporting that flag-shoot may be originated indifferently by group A or group B isolate. Previous studies observed a strong association between the levels of disease severity at the end of the growing season and the initial compositions of E. necator populations in commercial vineyards. The frequencies of E. necator genetic groups vary considerably among vineyards, and the two groups may coexist in the same vineyard. This finding suggests that we need more information on the genetics and epidemiology of E. necator for optimize the crop management In this study we monitored E. necator populations in different vineyards in Emilia – Romagna region (Italy), where the pathogen overwinters both as flagshoots and as cleistothecia. During the grape growing season, symptomatic leaves were sampled early in the growing season and both leaves and berries later during the epidemic growth of the disease. From each sample, single-conidial isolate was obtained. Each isolates was grown on V. vinifera leaf cv. Primitivo and after harvesting the mycelium, the DNA was purified and used as template for PCR amplification with SCAR primers (Sequences Characterised Amplified Region ), -tubulin, IGS sequences and Microsatellite markers (SSR). Amplified DNA from b-tubulin and IGS loci was digested with AciI and XhoI restriction enzymes, respectively, to show single-nucleotide polymorphisms specific for the two genetic groups. The results obtained indicated that SCAR primers are not useful to study the epidemiology. of E. necator conversely the b-tubulin IGS sequences and SSR. Summarize the results obtained with b-tubulin, IGS sequences, in treated vineyards we have found individuals of group B along all grape growing season, whereas in the untreated vineyard individuals of the two genetic groups A and B coexisted throughout the season, with no significant change of their frequency. DNA amplified from ascospores of single cleistothecia showed the presence of markers diagnostic for either groups A and B and were seldom observed also the coexistence of both groups within a claistothecium. These results indicate that individuals of the two groups mated in nature and were able to produced ascospores. With SSR we showed the possibility of recombination between A and B groups in field isolates. During winter, cleistothecia were collected repeatedly in the same vineyards sampling leaves fallen on ground, exfoliating bark from trunks, and from soil. From each substrate, was assess the percentage of cleistothecia containing viable ascospores. Our results confirmed that cleisthotecia contained viable ascospores, therefore they have the potential to be an additional and important source of primary inoculum in Emilia-Romagna vineyards.

Sitobion graminis Takahashi, 1950 (Hemiptera, Aphididae): first record in Brazil, biological and morphometric parameters

The species Sitobion graminis Takahashi, 1950 (Hemiptera, Aphididae) was first detected in Brazil in 1998, in Curitiba, Paraná state, associated with the grass species Erianthus sp., Calamagrotis sp. and Paspalum urvilei. Both the field-collected and laboratory-reared specimens presented a noticeable intrapopulational variation in body and appendix length and in dorso-abdominal sclerotization. This species has been recorded in Malaysia, New Guinea, India, Philippines and Africa, where it colonizes several species of Poaceae. S. graminis differs from other Sitobion species from Brazil associated with grasses, as it presents black cauda and siphunculi and exhibits a constriction in the base of the last rostral segment. Biological data were obtained in the laboratory by rearing newborn nymphs on the inflorescence of the host plants. They passed through four nymphal instars. The mean duration of the nymphal stage was of 11.4 days, with a mortality ratio of 36.5%. The mean pre-larviposition period was of 1.8 days; mean longevity of the females was 25.2 days; and mean fecundity was 18.7 nymphs/female, ranging from 2 to 41 nymphs/female.

Biologia de Psyllobora confluens alimentada com o fungo Erysiphe cichoracearum

O objetivo deste trabalho foi avaliar os aspectos biológicos de Psyllobora confluens alimentada com o fungo Erysiphe cichoracearum em folhas de quiabeiro. Larvas recém-eclodidas de P. confluens foram individualizadas e alimentadas diariamente com hifas e conídios do fungo, em folhas de quiabeiro, a 23,6±3 e 27,4±2ºC e fotófase de 12 horas. A duração dos estágios imaturos, os aspectos reprodutivos e a longevidade de P. confluens foram avaliados. O período de desenvolvimento de larva a adulto foi 20,5 dias a 23,6ºC e 16,6 dias a 27,4ºC. Em ambas as temperaturas, 80% das larvas de P. confluens atingiram a fase adulta. Fêmeas de P. confluens apresentaram período de oviposição de 32,7 dias, com capacidade diária e total de oviposição de 16,8 e 439,9 ovos, respectivamente. A longevidade das fêmeas foi de 46,1 dias e a dos machos 58,7 dias. P. confluens, ao se alimentar do fungo E. cichoracearum em folhas de quiabeiro, completa o ciclo de vida e apresenta elevados padrões de sobrevivência e reprodução.

Incidência e índice de doença do mosaico do trigo em cereais de inverno e em gramíneas de verão, associados ao Polymyxa graminis

O Soil-borne wheat mosaic virus (SBWMV) é transmitido pelo fungo de solo Polymyxa graminis. Em ensaios conduzidos a campo, por dois anos, avaliaram-se a incidência, severidade e presença do vetor do vírus no sistema radicular das gramíneas: aveia (Avena sativa e A. strigosa), azevém (Lilium multiforum), cevada (Hordeum vulgare), milhã (Digitaria sp.), milheto (Pannisetum americanum), milho (Zea mays), papuã (Brachiaria sp.), sorgo (Sorghum bicolor), trigo (Triticum aestivum) e triticale (Triticum secale). A incidência da virose foi calculada com base no percentual de plantas sintomáticas, sendo atribuído notas de 0-5 para determinar o ID (%) . Os segmentos radiculares foram coletados, corados com solução de lactofenol-azul de algodão e visualizados em microscópio luminoso, atribuindo-se níveis de infestação pela quantidade de grupos de esporos de resistência de P. graminis. Em espécies de aveia, não foram observados sintomas e esporos de resistência do vetor. Na cultura da cevada, não foram observados sintomas, mas sim esporos de resistência no sistema radicular. Para o triticale e o trigo, na primeira época de plantio, a incidência e ID (%) foram mais elevados quando comparados à segunda época. Observou-se uma relação direta entre o ID (%) e a quantidade de esporos de resistência. Nas gramíneas de verão, não foram observados sintomas de SBWMV nem esporos de resistência no sistema radicular.

Ocorrência do mal-do-pé causado por Gaeumannomyces graminis var. graminis, uma nova enfermidade em arroz no Brasil

O mal-do-pé em arroz (Oryza sativa) foi constatado em lavouras de terras altas nos municípios de Unaí (MG), Palmeiras (GO), Itaberaí (GO), Humaitá (AM) e em lavouras irrigadas nos Estados de Goiás, Tocantins e Rio Grande de Sul. O agente causal foi identificado como Gaeumannomyces graminis var. graminis baseado em características morfológicas, culturais e testes de patogenicidade utilizando diferentes isolados brasileiros. O método de inoculação e avaliação da doença em de casa de vegetação foi descrito. Este é o primeiro registro desta enfermidade na cultura do arroz no Brasil.

Sensibilidade de Blumeria graminis f.sp. tritici a alguns fungicidas

Em experimentos conduzidos no campo, na safra 2000, avaliou-se a sensibilidade do oídio do trigo nas cultivares de trigo (Triticum aestivum) BR 23 e OR 1 a alguns fungicidas. As avaliações da intensidade da doença foram feitas com base na incidência, severidade e área abaixo da curva de progresso da doença, realizadas aos sete, 14 e 21 dias após a pulverização dos fungicidas. O fungo agente causal do oídio, Blumeria graminis f.sp. tritici, mostrou-se sensível aos fungicidas sistêmicos em ambas as cultivares. A maior sensibilidade foi ao fungicida triadimenol, considerando-se os valores absolutos na porcentagem de controle da doença. O enxofre, pelo curto período de proteção, não tem potencial de uso em trigo. Os danos no rendimento de grãos foram de 32% e 79% respectivamente para 'BR 23' e 'OR 1'. O controle do oídio, mesmo em cultivares altamente suscetíveis, como 'OR 1', pode ser eficientemente realizado com fungicidas sistêmicos recomendados pela pesquisa, não sendo detectada insensibilidade do fungo aos mesmos. No entanto, deve-se evitar o uso de sub-dose e controlar a doença com a incidência recomendada pela pesquisa com base no limiar de dano econômico.

Variability of the wheat powdery mildew pathogen Blumeria graminis f. sp. tritici in the 2003 crop season

Wheat (Triticum aestivum) powdery mildew, caused by the biotrophic fungus Blumeria graminis f. sp. tritici, is one of the most severe foliar diseases attacking this crop, reducing grain yields by 10% to 62% in Brazil. The disease can be controlled by genetic resistance of the host, but the pathogen has physiological specialization, which enables it to infect wheat cultivars that have remained resistant for years. The objective of this work was to evaluate the variability of pathogenic strains of B. graminis f. sp. tritici collected in Brazil and the effectiveness of wheat resistance genes to powdery mildew in the 2003 crop season. Plants of a differential series were inoculated with each monopustular isolate. Thirty-one combinations of effective and ineffective resistance genes were identified. Only the gene Pm4a+... remained totally effective to all isolates, and gene Pm6 was highly effective (below 10% of susceptibility), whereas genes Pm3a and Pm8 were totally ineffective (susceptible to all isolates). Genes Pm3c, D1, and D2 showed low effectiveness (above 50% of susceptibility), and genes Pm1, 2, 4a, 1+?, and 2+Mld had mean effective results to most strains (susceptibility between 10% and 49%). The virulence formula Pm1, 3c, 4a, 6, 1+?, 2+Mld, 4a+..., D2 (effective genes) / 2, 3a, 8, D1 (ineffective genes) was most frequently found, accounting for 15% of the occurrences. The most frequent number of ineffective genes was seven, ranging from three to ten.

Sensitivity reduction in Blumeria graminis f. sp. hordei to triadimenol fungicide applied as barley seed treatment

Experiments were carried out in a growth chamber with controlled temperature and photoperiod to test two populations of Blumeria graminis f. sp. hordei from Guarapuava, Paraná State, and Passo Fundo, Rio Grande do Sul State, Brazil. Treatments consisted in application of the fungicide triadimenol (Baytan 150 SC®) at three rates of its commercial formulation: 150, 250, 350 mL/100 Kg barley seeds. The experiments were conducted separately in a growth chamber for each population, adopting the same temperature and photoperiod. For inoculation, pots containing barley seedlings colonized by the fungus were placed among the plots. After emergence of the first symptoms, the disease severity was assessed at two-day intervals. The experiments were repeated twice for each fungus population. Data were expressed as area under the disease progress curve and as powdery mildew control by comparing the severity after the fungicide treatments to that of control. Data were subjected to analysis of variance and regression analysis; the area under the disease progress curve was also calculated. Comparing the data obtained in the present study with those reported in the literature and the control, the maximum value of 26.1% is considered insufficient to prevent the damages caused by the disease. The control response to the fungicide rate was significant. We can conclude that there was a reduction in the sensitivity of both B. graminis f.sp. hordei populations to the fungicide triadimenol, which explains the control failure observed in barley farms.

Fotossíntese de folhas de soja infectadas por Corynespora cassiicola e Erysiphe diffusa

A estimativa visual da severidade de doenças em plantas nem sempre se correlaciona com o efeito desta sobre a atividade fotossintética do hospedeiro. O objetivo do trabalho foi avaliar a interferência dos fungos Corynespora cassiicola e Erysiphe diffusa, causadores da mancha-alvo e do oídio na cultura da soja, respectivamente, na eficiência fotossintética de folhas infectadas. A fotossíntese foi relacionada com a área foliar doente por meio da equação Px/ Po=(1-x)β. Os parâmetros β (± erro padrão) estimados foram 2,78 (± 0,28) (p<0,05) para as folhas infectadas com C. cassiicola e 0,72 (±0,09) (p<0,05) e 0,77 (±0,15) (p=0,15) com E. diffusa, na primeira e segunda repetições. O valor obtido para C. cassiicola (β>1) indica que houve redução da eficiência fotossintética no tecido lesionado e em parte do tecido verde remanescente, enquanto que os valores obtidos para E. diffusa (β≤1) indicam que a estimativa visual da severidade da doença é um bom indicador do efeito do fungo na taxa fotossintética do hospedeiro.

Exploring the spatial variation of take-all (Gaeumannomyces graminis var. tritici) for site-specific management

The fungus Gaeumannomyces graminis var. tritici (Ggt), commonly known as the take-all fungus, causes damage to roots of wheat and barley that limits crop growth and causes loss of yield. There was little knowledge on the within-field spatial variation of take-all and relations with features in the growing crop, selected soil properties and spectral information from remotely sensed imagery. Geostatistical analyses showed that take-all, chlorosis and leaf area index had similar patchy distributions. Many of the spectral bands from a hyperspectral image also had similar spatial patterns to take-all and chlorosis. Relations between take-all and mineral nitrogen, elevation and pH were generally weaker.