The use of acoustic indices to determine avian species richness in audio-recordings of the environment

Interpreting acoustic recordings of the natural environment is an increasingly important technique for ecologists wishing to monitor terrestrial ecosystems. Technological advances make it possible to accumulate many more recordings than can be listened to or interpreted, thereby necessitating automated assistance to identify elements in the soundscape. In this paper we examine the problem of estimating avian species richness by sampling from very long acoustic recordings. We work with data recorded under natural conditions and with all the attendant problems of undefined and unconstrained acoustic content (such as wind, rain, traffic, etc.) which can mask content of interest (in our case, bird calls). We describe 14 acoustic indices calculated at one minute resolution for the duration of a 24 hour recording. An acoustic index is a statistic that summarizes some aspect of the structure and distribution of acoustic energy and information in a recording. Some of the indices we calculate are standard (e.g. signal-to-noise ratio), some have been reported useful for the detection of bioacoustic activity (e.g. temporal and spectral entropies) and some are directed to avian sources (spectral persistence of whistles). We rank the one minute segments of a 24 hour recording in descending order according to an "acoustic richness" score which is derived from a single index or a weighted combination of two or more. We describe combinations of indices which lead to more efficient estimates of species richness than random sampling from the same recording, where efficiency is defined as total species identified for given listening effort. Using random sampling, we achieve a 53% increase in species recognized over traditional field surveys and an increase of 87% using combinations of indices to direct the sampling. We also demonstrate how combinations of the same indices can be used to detect long duration acoustic events (such as heavy rain and cicada chorus) and to construct long duration (24 h) spectrograms.

Ecological risk assessment of pollution in sediment on benthic fauna in coast of Bandar Abbas

Ecological risk assessment is determination of the probability of an adverse effect occurring to an ecological system. This investigation was carried out to assess the ecological risk of sediment in coast of Bandar Abbass in 9 stations including Shilat Jetty, Hotel Amin, Poshte-Shahr, Souro, Bahonar Jetty, Powerhouse, Refinery and Rajaee Jetty from autumn 2013 to summer 2014. Results showed that Polychaete with 1177 , 1109 , 414 , 573 , ind.m2 in autumn 91 , winter 91 , spring 92 and summer 92 were the most abundant in frequency respectively. Among ecological indices, the Margalof that ranged from 4 to 7 was in a good situation while Shanoon and Berger – Parker with 1.2 (at most) and 0.32 (at least) respectively indicated an environment with probable stress. Heavy metal distribution obtained as Cd>Pb>Cu>Zn in sediment. In tissue, the distribution of heavy metals were as Crab>polychaete>Bivalve>gastropod for Pb, Gastropod>Bivalve>Polychaete>Crab for Cd, Gastropod>Crab>Polychaete>Bivalve for Cu and Gastropod>Bivalve>Crab>Polychaete for Zn. Maximum and Minimum of TOM obtained 10.16 and 1.96 percent in Posht-e-Shahr and shilat Jetty respectively and clay was the dominant grain in most area. Bioaccumulation coefficient of Zn and Cu was high in all stations. Igeo as a single index was high for Cd indicating a high risk in all stations. Potential Ecological Risk was high for Cu and Zn and goes increasingly from shilat Jetty to Rajee Jetty but goes down for Pb. Pollution index for Cu and Pb was nearly the same as Potential Ecological Risk but for Zn goes constantly. Among PAH, 5-ring and 6-ring PAhs were more concentrate comparison to other compounds in sediment. 2-ring and 3-ring, 3-ring, 4-ring and 5-ring and 5-ring PAHs were more concentrate in Gastropod, Bivalve, Crab and Polychaete respectively. HI as an index of PAH obtained 1. Ecological Risk Indices showed that the heavy metals are a serious risk for invertebrate in sediment but PAHs are not a risk for benthic community.

Ecological Status Report: results from the CPR Survey 2004/2005.

Using a number of ecological indices, this report summarises unusual species found, large phytoplankton blooms, changes in community structure and trends in hydrobiological indicators from regions in the North Atlantic (with an emphasis on the North Sea). In the majority of cases the term unuasual or large in referring to phytoplankton blooms refers to population increases greater than four standard deviations above the species recorded baseline mean (baseline mean: 1980-2003). Notable blooms that are geographically lareg refer to patch sizes greater then 100 km in diameter. The primary regional assessment area used to monitor changes in community structure, biomass and phenological changes is the central North Sea. Most data analysis has been performed to highlight the year 2004 in relation to the long-term dataset. 2005 sample data is presented but has not yet undergone quality checks. Annual abundance estimates were calculated for each CPR box when eight or more months were sampled, no annual estimate of abundance was calculated. Sea surface temperature was used as an indicator of ocean climate and climate change.

Ecological relevance of sentinels' biomarker responses: A multi-level approach

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Helsingin metropolialueen maisemaekologiset muutokset vuosina 1955-2009

Landscape is shaped by natural environment and increasingly by human activity. In landscape ecology, the concept of landscape can be defined as a kilometre-scale mosaic formed by different land-use types. In Helsinki Metropolitan Region, the landscape change caused by urbanization has accelerated after the 1950s. Prior to that, the landscape of the region was mainly only shaped by agriculture. The goal of this study was in addition to describing the landscape change to discuss the factors impacting the landscape change and evaluate thelandscape ecological impacts of the change. Three study areas at different distances from Helsinki city centre were chosen in order to look at the landscape change. Study areas were Malmi, Espoo and Mäntsälä regions representing different parts of the urban-to-rural gradient in 1955, 1975, 1990 and 2009. Land-use of the maps was then digitized into five classes: agricultural lands, semi-natural grasslands, built areas, waters and others using GIS methods. First, landscape change was studied using landscape ecological indices. Indices used were PLAND i.e. the proportions of the different land-use types in the landscape; MPS, SHEI and SHDI which describe fragmentation and heterogeneity of the landscape; and MSI and ED which are measures of patch shape. Second, landscape change was studied statistically in relation to topography, soil and urban structure of the study areas. Indicators used concerning urban structure were number of residents, car ownership and travel-related zones of urban form which indicate the degree of urban sprawl within the study areas. For the statistical analyses, each of the 9.25 x 9.25 km sized study areas was further divided into grids with resolution of 0.25 x 0.25 kilometres. Third, the changes in the green structure of the study areas were evaluated. The landscape change reflected by the proportions of the land-use types was the most notable in Malmi area where a large amount of agricultural land was developed from 1955 to 2009. The proportion of semi-natural grasslands also showed an interesting pattern in relation to urbanization. When urbanization started, a great number of agricultural lands were abandoned and turned into semi-natural grasslands but as the urbanization accelerated, the number of semi-natural grasslands started to decline because of urban densification. Landscape fragmentation and heterogeneity were the most widespread in Espoo study area which is not only because of the great differences in relative heights within the region but also its location in the rural-urban fringe. According to the results, urbanization induced agricultural lands to be more regular in shape both spatially and temporally whereas for built areas and semi-natural grasslands the impact of urbanization was reverse. Changes in landscape were the most insignificant in the most rural study area Mäntsälä. In Mäntsälä, built area per resident showed the greatest values indicating a widespread urban sprawl. The values were the smallest in highly urbanized Malmi study area. Unlike other study areas, in Mäntsälä the proportion of developing land in the ecologically disadvantageous cardependent zone was on the increase. On the other hand, the green structure of the Mäntsälä study area was the most advantageous whereas Malmi study area showed the most ecologically disadvantageous structure. Considering all the landscape ecological criteria used, the landscape structure of Espoo study area proved to be the best not least because of the great heterogeneity of its landscape. Thus the study confirmed the previous results according to which landscape heterogeneity is the most significant in areas exposed to a moderate human impact.

Foraminíferos como indicadores paleoecológicos do Holoceno no Manguezal de Guaratiba, Baía de Sepetiba, Rio de Janeiro

Os manguezais são ecossistemas estuarinos, representando a transição entre os ambientes continentais e marinhos, e tendo sua formação relacionada com as flutuações do nível do mar no Quaternário. No Manguezal de Guaratiba, diversos estudos sobre as variações do nível do mar, mais precisamente no Holoceno, têm sido realizados, sob os enfoques sedimentológicos, geoquímicos, palinológicos e micropaleontológicos. Entre os estudos micropaleontológicos, destacam-se os que utilizam os foraminíferos bentônicos, micro-organismos amplamente utilizados como indicadores paleoecológicos e paleoambientais do Holoceno. No presente trabalho, foi coletado, através de um amostrador do tipo trado russo, um testemunho (T1) no Manguezal de Guaratiba, no qual foram realizadas análises de parâmetros como granulometria, teores de matéria orgânica (MO), carbonato, carbono orgânico total (COT) e enxofre (S) (abióticos) e da fauna de foraminíferos bentônicos (bióticos). Foram utilizadas também índices ecológicos e análises de agrupamento, através das quais foi possível estabelecer quatro associações faunísticas (I,II,III e IV), assim como os fatores ambientais que mais influenciaram a distribuição da fauna. A correlação com assembleias de foraminíferos de outros testemunhos que possuem datação por Carbono 14 (C14), assim como outros trabalhos que versam sobre a evolução da Baía de Sepetiba, permitiu o estabelecimento de três ciclos de emersão-submersão para a área da planície de maré estudada: 1)Fase transgressiva: nível de concentração de conchas em depósitos lagunares formados por sedimentos finos, sem foraminíferos; provavelmente posterior a uma regressão; 2) Fase transgressiva: formação de uma baía, com presença exclusiva de espécies de foraminíferos calcários (Associação III) com maiores valores de riqueza e queda nos valores de COT; ocorrida há cerca de 3.800 anos A.P 3) Fase transgressiva: período de submersão, presença de espécies de foraminíferos tipicamente estuarinos (Associação IV), com duração entre 3.500 anos A.P. e 2.700 anos A.P.; 4)Fase transgressiva: caracterizada pela alternância entre a formação de baías rasas e lagunas marinhas (maiores índices de riqueza nas associações faunísticas), menores valores de MO e COT e aumento na proporção de sedimentos finos; evento iniciado há cerca de 2.700 anos A.P.; e 5)Fase regressiva: fauna de foraminíferos aglutinantes, resistente às condições de salinidade e acidez características de ambientes confinados como os manguezais, além do incremento nos teores de areia, evidenciando a fase final de confinamento da Baía de Sepetiba pela Restinga da Marambaia; evento iniciado por volta de 2.400 anos A.P., estendendo-se até o presente. Os resultados obtidos mostram a importância da correlação lateral entre testemunhos na interpretação paleoambiental da Baía de Sepetiba, além da identificação de estágios de transgressão e regressão que se aproximam da curva de variação do nível do mar proposta por SUGUIO et al.(1985) para o litoral do Estado do Rio de Janeiro

Diversity, abundance distribution and secondary production of intertidal and subtidal benthic macrofauna of Bushehr Province with emphasis on annelida groups

The present investigation was undertaken to establish a reference situation for future use, to identify temporal and spatial composition of macrofauna and estimate some ecological indices in the sub tidal waters along the Bushehr coastal waters in Persian Gulf. Six transects were selected including Genaveh, Farakeh, Shif, Bandargah, Rostami and Asalouyeh, at each transect 3 station were sampled in depths of zero, 5 and 10 metres. Sampling was seasonally carried out by a VAN VEEN grab 0.0225 m2, during summer 2008 until spring 2009. Samples were wet sieved immediately using 0.5 mm mesh size sieves and sediment retained in the sieve was preserved in 4% buffered formalin solution. Macrofauna specimen were separated from the sediments using decantation and elutriation methods, enumerated and identified up to the Genus level. Environmental factors such as temperature. pH, and salinity were recorded in field using sensitive probs and refractometer (for salinity) and also sediment samples were taken for TOM and grain size analysis in all the stations. 5611 specimens belonging to 66 genera were collected during the present study. Polychaetes were dominant both in terms of genus number (31) and relative abundance (74 % of total macrofaunal abundance). The other dominant groups were Artheropoda, (16.1%), Molusca (2.8%), Echinodermata (1.29%) and others including Nematoda, Nemertina, Echiura and Turbellaria (5.8%). Thirty one Genera belong of 27 families of polychaeta, one genus and family of Subphylum Chlicerata,19 genera belong to 14 families of Crustacea, 8 genera belong to 6 families of Molusca, were indentified in the studied region. 1 family (Polygordidae) and 3 genera (Flabeligera, Pilargis and Polygordius) of Polychaeta, 1 family (Nymphonidae) and genus (Nymphon) of Chelicerata, 1 Family (Nematoplanidae) and genus (Nematoplana) of Turbellaria, were identified for the first time in Persian Gulf area. The result indicated that macrofauna organism have strong relationship with the grain size characteristics of the sediments they inhabit. The most surface deposit feeder specimens such as Prionospio and Cossura were found in zero meters depth of Genaveh, Farakeh, Bandargah, Rostami and Asalouyeh stations with sandy substratum, however the most burrowing deposit feeder and scavenger specimens such as Capitella and Petaloproctus were collected in 5 and 10 meter depths of stations with silty–clay substratum. The annual mean abundance, Shanon- weiner diversity and evenness of macrofauna were estimated1152.73 N/ m² , 2.72 and 0.792 respectively .The annual average biomass and secondary production were computed 1.797 gDW m² and 3.594 gDW m² y-1 .The average of water temperature, salinity, pH and oxygen concentration were recorded between 16.37-36.05 °C, 38-42 g/l, 7.89-8.76 and 4.23-8.23 mg/l, respectively during this study in 6 studied region. Among of investigated stations Asalouyeh adjacent of effluent canal of Gas and petrochemical industry sewage and Farakeh regions adjacent the Helleh estuary had the lowets and the highest community indices. The average of diversity and density in 5 meters depth stations with moderate of sand, silt and clay were slightly more than 2 other depths stations, it seems that 5 meters stations are made a transition habitats between 2 sandy and clay habitats, that can be used by 2 groups of surface and borrowing deposit feeders. Based on the data provided in this survey, the temperature variation, sediment texture, TOM, type habitat and manmade factors of Gas and petrochemical industries have had the most effect on the macrofauna community structure in the studied region during sampling periods.

CO2浓度升高和氮肥管理对土壤线虫群落的影响

大气CO2浓度升高能够对农田生态系统产生一系列的影响。土壤线虫在农田生态系统腐屑食物网中占有重要的地位，能够对外界环境变化作出较迅速的响应。本文利用江苏省江都市小记镇的稻-麦轮作FACE系统研究平台，在2007-2008年小麦生长季，研究了大气CO2浓度升高和不同氮肥处理（高N和低N）对农田土壤线虫群落的影响。 研究结果表明：高氮肥施用情况下, CO2浓度升高显著降低了麦田土壤铵态氮和硝态氮含量。不同氮肥处理中CO2浓度升高条件下土壤可溶性碳的含量显著低于对照，而土壤总有机碳和微生物量碳含量高于对照。 大气CO2浓度升高条件下，麦田土壤线虫群落组成和多样性与对照相比表现出显著差异。CO2浓度升高显著增加了麦田土壤线虫总数、食细菌线虫、食真菌线虫和植物寄生线虫数量。在小麦拔节期和成熟期，低N和高N施用条件下，FACE处理中土壤线虫多样性指数（H’）、成熟度指数（MI和PPI）均低于对照处理，而结构指数（SI）高于对照处理。线虫生态指数的结果表明，大气CO2浓度升高条件下，土壤线虫群落多样性降低，土壤环境受到一定的干扰，食物网趋于结构化。

Toxicity risks linked to cyanobacteria blooms in southern Portugal reservoirs

Tese de doutoramento, Ciências e Tecnologias do Ambiente, Escola Superior de Saúde, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015

Evaluating canalside hedgerows to determine future interventions

This paper describes a project undertaken during 2001/2002 which developed a method for valuing hedgerows adjacent to the inland waterway network of Great Britain. The method enables the landowner, British Waterways, to manage their valuable environmental asset to achieve a good level of biodiversity and robust habitat balanced against the heavy amenity use the 3000 km canal network endures. Valuation techniques were developed using a combination of new and existing ecological indices for components of biodiversity, hedgerow structure and amenity, and synthesised into an index in an innovative combined approach. The resultant index was then applied to a sample 20 km section of hedge alongside the Grand Union Canal in Southeast England. The results obtained reflect the hedgerows' present value, and highlight factors that might improve or limit their future increase in value. The results from the case study application also demonstrate that there is a positive relationship between hedgerow structure and biodiversity, and that hedgerows in urban areas are less biodiverse and structurally sound than those in rural areas. Furthermore, there is a zone within rural areas influenced by the adjacent urban areas and/or higher amenity use. The paper concludes with an assessment of the approaches' strengths and weaknesses with a view to its compatibility with other hedgerow evaluations, such as HEGS, its use by other agencies or landowners, and to aid hedgerow management and future development. (C) 2004 Elsevier Ltd. All rights reserved.

Florística e fitossociologia do estrato arbustivo de área de transição savana-floresta no Parque Estadual de Porto Ferreira, SP

Pós-graduação em Ciências Biológicas (Biologia Vegetal) - IBRC

Fatores naturais de mortalidade de ovos de Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) e diversidade de artrópodes em diferentes sistemas de colheita de cana-de-açúcar

Pós-graduação em Agronomia (Entomologia Agrícola) - FCAV

Biodiversity of decapod crustaceans in the estuarine floodplain around the city of Belém (Pará) in Brazilian Amazonia

ABSTRACT: The present study focused on the decapod fauna of the fluvial-estuarine environment of the Guajará Bay, in the Brazilian state of Pará, where specimens were collected monthly from six sites, from May 2006 to April 2007. A total of 6,793 specimens were captured, belonging to 11 species of crab and shrimp: eight palaemonids - Macrobrachium amazonicum (Heller, 1862), Macrobrachium surinamicum Holthuis, 1948, Macrobrachium carcinus (Linnaeus, 1758), Macrobrachium rosenbergii (De Man, 1879), Macrobrachium spp. 1-4 -, one portunid - Callinectes bocourti A. Milne-Edwards, 1879 -, and two trichodactylids - Sylviocarcinus devileii H. Milne-Edwards, 1853 and Sylviocarcinus pictus (Milne-Edwards, 1853). While no significant differences were found in the ecological indices of diversity with respect to season, site, or trap size, a tendency for increased abundance and species richness was found during the dry season (August-November), in particular at some sites, apparently reflecting the influence of the estuary's saline wedge.

Biodiversity, distribution and abundance of shrimps Penaeoidea and Caridea communities in a region the vicinity of upwelling in Southeastern of Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)