Genes and growth performance in crustacean species : a review of relevant genomic studies in crustaceans and other taxa

Global aquaculture has expanded rapidly to address the increasing demand for aquatic protein needs and an uncertain future for wild fisheries. To date, however, most farmed aquatic stocks are essentially wild and little is known about their genomes or the genes that affect important economic traits in culture. Biologists have recognized that recent technological advances including next generation sequencing (NGS) have opened up the possibility of generating genome wide sequence data sets rapidly from non-model organisms at a reasonable cost. In an era when virtually any study organism can 'go genomic', understanding gene function and genetic effects on expressed quantitative trait locus phenotypes will be fundamental to future knowledge development. Many factors can influence the individual growth rate in target species but of particular importance in agriculture and aquaculture will be the identification and characterization of the specific gene loci that contribute important phenotypic variation to growth because the information can be applied to speed up genetic improvement programmes and to increase productivity via marker-assisted selection (MAS). While currently there is only limited genomic information available for any crustacean species, a number of putative candidate genes have been identified or implicated in growth and muscle development in some species. In an effort to stimulate increased research on the identification of growth-related genes in crustacean species, here we review the available information on: (i) associations between genes and growth reported in crustaceans, (ii) growth-related genes involved with moulting, (iii) muscle development and degradation genes involved in moulting, and; (iv) correlations between DNA sequences that have confirmed growth trait effects in farmed animal species used in terrestrial agriculture and related sequences in crustacean species. The information in concert can provide a foundation for increasing the rate at which knowledge about key genes affecting growth traits in crustacean species is gained.

Differential expression profiling of components associated with exoskeletal hardening in crustaceans

Background: Exoskeletal hardening in crustaceans can be attributed to mineralization and sclerotization of the organic matrix. Glycoproteins have been implicated in the calcification process of many matrices. Sclerotization, on the other hand, is catalysed by phenoloxidases, which also play a role in melanization and the immunological response in arthropods. Custom cDNA microarrays from Portunus pelagicus were used to identify genes possibly associated with the activation pathways involved in these processes. Results: Two genes potentially involved in the recognition of glycosylation, the C-type lectin receptor and the mannose-binding protein, were found to display molt cycle-related differential expression profiles. C-type lectin receptor up-regulation was found to coincide with periods associated with new uncalcified cuticle formation, while the up-regulation of mannose-binding protein occurred only in the post-molt stage, during which calcification takes place, implicating both in the regulation of calcification. Genes presumed to be involved in the phenoloxidase activation pathway that facilitates sclerotization also displayed molt cycle-related differential expression profiles. Members of the serine protease superfamily, trypsin-like and chymotrypsin-like, were up-regulated in the intermolt stage when compared to post-molt, while trypsin-like was also up-regulated in pre-molt compared to ecdysis. Additionally, up-regulation in pre- and intermolt stages was observed by transcripts encoding other phenoloxidase activators including the putative antibacterial protein carcinin-like, and clotting protein precursor-like. Furthermore, hemocyanin, itself with phenoloxidase activity, displayed an identical expression pattern to that of the phenoloxidase activators, i.e. up-regulation in pre- and intermolt. Conclusion: Cuticle hardening in crustaceans is a complex process that is precisely timed to occur in the post-molt stage of the molt cycle. We have identified differential expression patterns of several genes that are believed to be involved in biomineralization and sclerotization and propose possible regulatory mechanisms for these processes based on their expression profiles, such as the potential involvement of C-type lectin receptors and mannose binding protein in the regulation of calcification.

Contributions to the geology and paleontology of the Canal Zone, Panama, and geologically related areas in Central America and the West Indies. Decapod crustaceans from the Panama region

Fifty-eight species of Decapods are enumerated from the collections examined by the author. Three species described by other authors are inserted in systematic order, thus making the list complete for the Panama region. All available material in the United States National Museum from Panama and Costa Rica is included; it ranges in age from the Oligocene (Culebra formation) to the Pleistocene.

A marked effect of water snails on small crustaceans. [Translation from: Anz.Ost.Akad.Wiss 10, 95-99, 1952. ]

Cases of mutual exclusion of two species of organisms in nature are known in large numbers. In the majority, they make different demands on the environ- ment which makes co-occurrence impossible. Less frequent are those cases in which a definite activity of one species prevents the occurrence of the other in the same region. An experiment was carried out n order to establish if Chydorus sphaericus can co-occur with water-snails. It emerged that a substance soluble in water which is given off by snails is responsible for the negative effect on small crustacea.

Relationship of dimensions and weight in freshwater planktonic crustaceans. [Translation from: Doklady Akademii Nauk SSSR 84(1) 153-156, 1952. ]

There is no doubt that determination of the biomass of zooplankton (primarily of crustaceans) will be taken into consideration in practice and limnological works, especially after the recent publication of fairly comprehensive tables of weights of a whole range of species of freshwater copepods and cladocerans. The usefulness of applying formulae of determining the biomass of marine crustaceans for freshwater copepods is discussed.

Limnetic crustaceans in Esthwaite water and adjacent lakes

Limnetic crustaceans (i.e. those which live in the open water of lakes and ponds) were investigated in Esthwaite water and adjacent lakes. These are represented by two groups, Copepoda and Cladocera.

Length-weight relationships for some important forage crustaceans from South Africa

The diet of marine animals is usually determined by stomach content analysis. Although partially digested prey fragments can often be identified to species level, it is difficult to estimate the original mass of the prey organism. This information, however, is essential for calculating both the total food intake as well as the relative contribution of each prey item. In this study we present regression equations that can be used to estimate the original mass of 18 common South African crustaceans from various indigestible fragments such as the carapace (length and width), chelae (length and width of left and right dactylus) and eye (length and width).

Histological techniques for marine bivalve mollusks and crustaceans, 2nd edition

Investigators at the Cooperative Oxford Laboratory (COL) diagnose and study crustaceans, mollusks, finfish, and a variety of other marine and estuarine invertebrates to assess animal health. This edition updates the Histological Techniques for Marine Bivalve Mollusks manual by Howard and Smith (1983) with additional chapters on molluscan and crustacean techniques. The new edition is intended to serve as a guide for histological processing of shellfish, principally bivalve mollusks and crustaceans. Basically, the techniques included are applicable for histopathological preparation of all marine animals, recognizing however that initial necropsy is unique to each species. Photographs and illustrations are provided for instruction on necropsy of different species to simplify the processing of tissues. Several of the procedures described are adaptations developed by the COL staff. They represent techniques based on principles established for the histopathologic study of mammalian and other vertebrate tissues, but modified for marine and aquatic invertebrates. Although the manual attempts to provide adequate information on techniques, it is also intended to serve as a useful reference source to those interested in the pathology of marine animals. General references and recommended reading listed in the back of the manual will provide histological information on species not addressed in the text.

On the behaviour of marine crustaceans in an electrical field of alternating current

The minimum flow of current essential to produce electro-narcosis and fixation in marine crustaceans, Metapenaeus affinis, Parapenaeopsis stylifera, Panulirus ornatus and Neptunus sanguinofentus in an AC field of specific strength varied with the lengths of animals tested, except in case of the last one where the increase in size of animals showed no significant effect on the effective period for different reactions. M. affinis in interrupted AC required threshold pulses for narcosis and fixation, which varied inversely with the length of the organism. Animals subjected to current of higher effective period required longer time for recovery in interrupted AC of 50 c/s. The period for narcosis and recovery of M. affinis did not vary significantly with repeated stimulations on the same organism.

Observations on the parasites and associates of wood boring molluscs and crustaceans of the south-west coast of India

An interesting assemblage of commensalic organisms ranging from Protozoa to Arthropoda has been identified from the wood boring animals (molluscs and crustaceans) from the south-west coast of India. Certain aspects of the general biology of the associated ciliates such as the nature of incidence, division in relation to environmental parameters, survival outside the body of the host and reactions related to the general condition of the host are described. Results are also presented of the tolerance of the rare commensalic hydroid Eutima commensalis to different salinities of the medium.

Studies on the fungal diseases in crustaceans. I. Lagenidum scyllae sp. nov. isolated from cultivated ova and larvae of the mangrove crab (Scylla serrata)

Lagenidium scyllae , a marine mastigomycete from the ova and larvae of the mangrove crab, is described and illustrated as new. The fungus grew at a temperature range of 16-42 C, with an optimum at 22.5-31.8 C. It grew well in peptone-yeast-glucose (PYG) broth containing 2-3% NaCl. In PYG-sea water medium, it grew at a pH range of 5-11.